>Feature gi|29345244|gb|AF158101.6|AF158101 2189 12 gene gene rIIA 2189 12 CDS product rIIA Protector from prophage-induced early lysis prot_desc membrane integrity protector protein_id lcl|11079640_1 note mutants give rapid lysis on various lysogenic strains due to effects of specific prophage products, mistakenly interpreted as related to lysis inhibition 2403 2200 gene gene rIIA.1 2403 2200 CDS product rIIA.1 hypothetical protein protein_id lcl|11079640_2 2990 2458 gene gene 60 2990 2853 CDS 2802 2458 product gp60 Topoisomerase II, large subunit, C-terminal region prot_desc Topoisomerase II in T4 and related phages an insertion splits the large Topo II subunit in two parts (gp60 and gp39) protein_id lcl|11079640_3 note a 50-bp segment is inserted in T4 gene 60 that forms an mRNA secondary structure that is translationally bypassed 2852 2801 mRNA product gene 60 mRNA translational bypass site note 50 base region in gene 60 mRNA; non-coding translational bypass region 3351 2971 gene gene 60.1 3351 2971 CDS product gp60.1 hypothetical protein protein_id lcl|11079640_4 3767 3654 gene gene mobA 3767 3654 CDS product MobA Homing endonuclease pseudogene prot_desc Defective DNA endonuclease; H-N-H family; relative of mobile endonucleases of filamentous fungi protein_id lcl|11079640_5 5328 3778 gene gene 39 5328 3778 CDS product gp39 Topoisomerase II, large subunit, N-terminal region prot_desc DNA-dependent ATPase, Topoisomerase II in T4 and related phages an insertion splits the large Topo II subunit in two parts (gp60 and gp39) protein_id lcl|11079640_6 5595 5398 gene gene 39.1 5595 5398 CDS product gp39.1 hypothetical protein protein_id lcl|11079640_7 5839 5702 gene gene 39.2 5839 5702 CDS product gp39.2 hypothetical protein protein_id lcl|11079640_8 6267 5842 gene gene goF gene_syn comC-alpha gene_syn go9H 6267 5842 CDS product goF mRNA metabolism modulator prot_desc Overcomes rho mutant effects protein_id lcl|11079640_9 6482 6267 gene gene cef gene_syn mb gene_syn M1 gene_syn comC-alpha.1 6482 6267 CDS product cef Modifier of suppressor tRNAs protein_id lcl|11079640_10 7141 6653 gene gene motB gene_syn dexA.-3 7141 6653 CDS product MotB Modifier of transcription protein_id lcl|11079640_11 7650 7291 gene gene motB.1 gene_syn dexA.-2 7650 7291 CDS product MotB.1 hypothetical protein protein_id lcl|11079640_12 8161 7661 gene gene motB.2 gene_syn dexA.-1 8161 7661 CDS product MotB.2 hypothetical protein protein_id lcl|11079640_13 8908 8225 gene gene dexA 8908 8225 CDS product DexA Exonuclease A prot_desc 3' to 5' DNA exonuclease activity involved in T4 DNA replication and host DNA degradation protein_id lcl|11079640_14 9150 8908 gene gene dexA.1 9150 8908 CDS product DexA.1 hypothetical protein protein_id lcl|11079640_15 9388 9143 gene gene dexA.2 9388 9143 CDS product DexA.2 hypothetical protein protein_id lcl|11079640_16 10729 9410 gene gene dda gene_syn sud 10729 9410 CDS product Dda DNA helicase prot_desc DNA-dependent ATPase, DNA helicase protein_id lcl|11079640_17 11037 10726 gene gene dda.1 11037 10726 CDS product Dda.1 hypothetical protein protein_id lcl|11079640_18 11785 11039 gene gene srd gene_syn dda.2 11785 11039 CDS product Srd Anti-sigma factor, putative prot_desc Postulated decoy of sigma factors RpoD and RpoS protein_id lcl|11079640_19 12510 11908 gene gene modA gene_syn dda.3 12510 11908 CDS product ModA RNA polymerase ADP-ribosylase prot_desc ADP-ribosylates both alpha subunits of RNA polymerase protein_id lcl|11079640_20 13130 12507 gene gene modB gene_syn modA.1 gene_syn dda.4 and dda.5 13130 12507 CDS product ModB ADP-ribosylase prot_desc ADP ribosylates ribosomal protein S1, EF-TU, trigger factor and other proteins protein_id lcl|11079640_21 13380 13198 gene gene modA.2 gene_syn dda.6 13380 13198 CDS product ModA.2 hypothetical protein protein_id lcl|11079640_22 13859 13389 gene gene modA.3 gene_syn dda.7 13859 13389 CDS product ModA.3 hypothetical protein protein_id lcl|11079640_23 14016 13852 gene gene modA.4 gene_syn dda.8 14016 13852 CDS product ModA.4 hypothetical protein protein_id lcl|11079640_24 14216 14013 gene gene srh gene_syn modA.5 gene_syn dda.9 14216 14013 CDS product Srh Transcription modulator prot_desc Postulated decoy of host sigma 32 (RpoH) protein_id lcl|11079640_25 14676 14191 gene gene mrh 14676 14191 CDS product Mrh Transcription modulator under heat shock prot_desc Allows growth on rpoH mutants protein_id lcl|11079640_26 15026 14685 gene gene mrh.1 15026 14685 CDS product Mrh.1 hypothetical protein protein_id lcl|11079640_27 15232 15026 gene gene mrh.2 15232 15026 CDS product Mrh.2 hypothetical protein protein_id lcl|11079640_28 15573 15331 gene gene soc 15573 15331 CDS product Soc Small outer capsid protein prot_desc Small outer capsid head accessory protein, found on T4 and a few related phages protein_id lcl|11079640_29 16280 15606 gene gene segF gene_syn 69 16280 15606 CDS product SegF Homing endonuclease prot_desc Site-specific endonuclease; Relative of mobile endonucleases of filamentous fungi; GIY-YIG family protein_id lcl|11079640_30 note GIY-YIG family 16785 16270 gene gene 56 16785 16270 CDS product gp56 dCTPase prot_desc Removes dCTP,dCDP/dUTP,dUDP from precursor pool protein_id lcl|11079640_31 16763 16763 rep_origin note DNA replication origin oriA; primer RNA same as transcript for genes 56, segF and 59; effective origin placed at 50 bases from start of middle transcript from promoter Pm16813 direction (-) strand direction standard_name oriA 17625 16846 gene gene dam 17625 16846 CDS product Dam DNA adenine methyltransferase prot_desc Produces N6-methyladenine in GATC sites (in modified or non-modified cytosine DNA) protein_id lcl|11079640_32 18963 17935 gene gene 58=61 18963 17935 CDS product gp61 DNA primase subunit prot_desc DNA replication primase protein_id lcl|11079640_33 19130 18966 gene gene 61.1 19130 18966 CDS product gp61.1 hypothetical protein protein_id lcl|11079640_34 19758 19132 gene gene 61.2 19758 19132 CDS product gp61.2 hypothetical protein protein_id lcl|11079640_35 20051 19758 gene gene sp gene_syn rIV gene_syn 61.3 20051 19758 CDS product sp spackle periplasmic protein prot_desc Mutants give rapid lysis and allow survival of lysozyme mutants protein_id lcl|11079640_36 20369 20112 gene gene 61.4 20369 20112 CDS product gp61.4 hypothetical protein protein_id lcl|11079640_37 20553 20371 gene gene dmd gene_syn 61.5 20553 20371 CDS product Dmd Discriminator of mRNA degradation prot_desc Mutants show destabilization of T4 mRNAs protein_id lcl|11079640_38 22039 20612 gene gene 41 22039 20612 CDS product gp41 DNA primase-helicase subunit prot_desc DNA primase-helicase ATPase, dATPase, GTPase, dGTPase for replication and recombination protein_id lcl|11079640_39 22393 22049 gene gene 40 22393 22049 CDS product gp40 Head vertex assembly chaperone prot_desc Membrane-associated initiator of head vertex assembly protein_id lcl|11079640_40 note misidentified as spackle gene 23561 22386 gene gene uvsX gene_syn fdsA 23561 22386 CDS product UvsX RecA-like recombination protein prot_desc RecA-like recombination protein, DNA-dependent ATPase protein_id lcl|11079640_41 24235 23570 gene gene segA gene_syn uvsX.1 24235 23570 CDS product SegA Homing endonuclease prot_desc Site-specific homing endonuclease protein_id lcl|11079640_42 note GIY-YIG family 25455 24400 gene gene b-gt 25455 24400 CDS product b-gt beta glucosyl transferase prot_desc adds a glucose in beta linkage to hydroxymethylcytosine residues in phage DNA protein_id lcl|11079640_43 26219 25479 gene gene 42 26219 25479 CDS product gp42 dCMP hydroxymethylase prot_desc dCMP hydroxymethylase for producing modified hydroxymethylcytosine in T4 DNA protein_id lcl|11079640_44 26624 26373 gene gene imm 26624 26373 CDS product Imm Immunity to superinfection membrane protein prot_desc Mediates a membrane change such that the DNA of superinfecting phage is left in the periplasm to be degraded rather than entering the host cell. protein_id lcl|11079640_45 27013 26636 gene gene imm.1 27013 26636 CDS product Imm.1 hypothetical predicted membrane protein protein_id lcl|11079640_46 29893 27197 gene gene 43 29893 27197 CDS product gp43 DNA polymerase prot_desc Core DNA polymerase of T4 replisome, 3'-5' exonuclease protein_id lcl|11079640_47 30340 29972 gene gene regA 30340 29972 CDS product RegA Translational repressor protein prot_desc Regulates translation of mRNAs for DNA replication proteins and other early gene products protein_id lcl|11079640_48 30905 30342 gene gene 62 30905 30342 CDS product gp62 Clamp loader subunit, DNA polymerase accessory protein protein_id lcl|11079640_49 31866 30907 gene gene 44 31866 30907 CDS product gp44 Clamp loader subunit, DNA polymerase accessory protein protein_id lcl|11079640_50 32603 31917 gene gene 45 32603 31917 CDS product gp45 Sliding clamp, DNA polymerase accessory protein prot_desc gp45 also is required for synthesis of late RNA, acting as a 'mobile enhancer' and in effect taking the place of a -35 region for the T4 sigma factor responsible for late transcription. protein_id lcl|11079640_51 33048 32659 gene gene rpbA gene_syn 45.1 33048 32659 CDS product RpbA RNA polymerase binding protein, function unknown protein_id lcl|11079640_52 33246 33058 gene gene 45.2 33246 33058 CDS product gp45.2 conserved hypothetical protein protein_id lcl|11079640_53 34984 33302 gene gene 46 34984 33302 CDS product gp46 Recombination endonuclease subunit prot_desc gp46/gp47 subunit required for recombination and host-DNA degradation protein_id lcl|11079640_54 35187 34981 gene gene 46.1 35187 34981 CDS product gp46.1 hypothetical protein protein_id lcl|11079640_55 35431 35168 gene gene 46.2 35431 35168 CDS product gp46.2 hypothetical protein protein_id lcl|11079640_56 36447 35428 gene gene gp47 36447 35428 CDS product gp47 Recombination endonuclease subunit prot_desc gp46/gp47 subunit required for recombination and host-DNA degradation protein_id lcl|11079640_57 36584 36444 gene gene 47.1 36584 36444 CDS product gp47.1 hypothetical predicted membrane protein protein_id lcl|11079640_278 37826 36624 gene gene a-gt 37826 36624 CDS product a-gt alpha glucosyl transferase prot_desc adds a glucose in alpha linkage to hydroxymethylcytosine residues in T4 DNA protein_id lcl|11079640_58 38679 37885 gene gene mobB gene_syn a-gt.1 38679 37885 CDS product MobB Homing endonuclease prot_desc DNA endonuclease; H-N-H family; relative of mobile endonucleases of filamentous fungi protein_id lcl|11079640_59 38922 38731 gene gene a-gt.2 38922 38731 CDS product a-gt.2 hypothetical protein protein_id lcl|11079640_60 39110 38907 gene gene a-gt.3 39110 38907 CDS product a-gt.3 hypothetical protein protein_id lcl|11079640_61 39396 39079 gene gene a-gt.4 39396 39079 CDS product a-gt.4 conserved hypothetical protein protein_id lcl|11079640_62 39616 39398 gene gene a-gt.5 39616 39398 CDS product a-gt.5 hypothetical protein protein_id lcl|11079640_63 40157 39600 gene gene 55 40157 39600 CDS product gp55 Sigma factor for T4 late transcription prot_desc T4-encoded sigma factor, associates with host RNAP protein_id lcl|11079640_64 40456 40193 gene gene 55.1 40456 40193 CDS product gp55.1 hypothetical protein protein_id lcl|11079640_65 40785 40459 gene gene 55.2 40785 40459 CDS product gp55.2 hypothetical protein protein_id lcl|11079640_66 41038 40799 gene gene 55.3 41038 40799 CDS product gp55.3 hypothetical protein protein_id lcl|11079640_67 41170 41039 gene gene 55.4 41170 41039 CDS product gp55.4 conserved hypothetical protein protein_id lcl|11079640_68 41471 41178 gene gene 55.5 41471 41178 CDS product gp55.5 conserved protein of unknown function prot_desc present in T4-related phage RB49 protein_id lcl|11079640_69 41646 41464 gene gene 55.6 41646 41464 CDS product gp55.6 conserved hypothetical protein protein_id lcl|11079640_70 42113 41805 gene gene nrdH 42113 41805 CDS product NrdH Glutaredoxin prot_desc Related to T4 thioredoxin but has glutaredoxin activity protein_id lcl|11079640_71 42328 42116 gene gene 55.8 42328 42116 CDS product gp55.8 conserved hypothetical predicted membrane protein protein_id lcl|11079640_72 42916 42446 gene gene nrdG gene_syn 55.9 42916 42446 CDS product NrdG Anaerobic NTP reductase, small subunit prot_desc Anaerobic ribonucleotide reductase converts rNTPs to dNTPs protein_id lcl|11079640_73 43538 42906 gene gene mobC gene_syn 55.10 43538 42906 CDS product MobC Homing endonuclease prot_desc DNA endonuclease; H-N-H family; relative of mobile endonucleases of filamentous fungi protein_id lcl|11079640_74 46385 43535 gene gene nrdD gene_syn sunY 46385 45848 CDS 44814 43535 product NrdD Anaerobic NTP reductase, large subunit (contains intron) prot_desc Anaerobic ribonucleotide reductase converts rNTPs to dNTPs protein_id lcl|11079640_75 45847 44815 intron note Intron in nrdD, also contains I-TevII CDS function Group IA2 self-splicing intron number 1 standard_name nrdD Intron 45612 44836 gene gene I-TevII 45612 44836 CDS product I-TevII Homing endonuclease prot_desc DNA endonuclease encoded by group 1A intron in nrdD; GIY-YIG family protein_id lcl|11079640_76 46855 46382 gene gene 49 46855 46382 CDS product gp49 EndoVII packaging and recombination endonuclease VII protein_id lcl|11079640_77 46699 46382 gene gene 49' 46699 46382 CDS product gp49' Internal start product in EndoVII prot_desc Internal start demonstrated and has its own promoter but the specific function is unknown. protein_id lcl|11079640_78 47382 46897 gene gene pin 47382 46897 CDS product Pin Protease inhibitor prot_desc Stabilizes proteins during T4 infection protein_id lcl|11079640_79 47521 47366 gene gene 49.1 47521 47366 CDS product gp49.1 conserved protein of unknown function prot_desc also found in phage RB49 protein_id lcl|11079640_80 47826 47506 gene gene 49.2 47826 47506 CDS product gp49.2 hypothetical protein protein_id lcl|11079640_81 48131 47823 gene gene 49.3 48131 47823 CDS product gp49.3 hypothetical protein protein_id lcl|11079640_82 48391 48128 gene gene nrdC 48391 48128 CDS product NrdC Thioredoxin protein_id lcl|11079640_83 48635 48393 gene gene nrdC.1 48635 48393 CDS product NrdC.1 conserved hypothetical protein protein_id lcl|11079640_84 48936 48622 gene gene nrdC.2 48936 48622 CDS product NrdC.2 conserved hypothetical protein protein_id lcl|11079640_85 49859 48933 gene gene nrdC.3 49859 48933 CDS product NrdC.3 conserved hypothetical protein protein_id lcl|11079640_86 50915 49914 gene gene nrdC.4 50915 49914 CDS product NrdC.4 conserved hypothetical protein protein_id lcl|11079640_87 51995 50973 gene gene nrdC.5 51995 50973 CDS product NrdC.5 conserved hypothetical protein protein_id lcl|11079640_88 52893 52066 gene gene nrdC.6 52893 52066 CDS product NrdC.6 conserved hypothetical protein protein_id lcl|11079640_89 53302 52901 gene gene nrdC.7 53302 52901 CDS product NrdC.7 conserved hypothetical, predicted membrane protein protein_id lcl|11079640_90 53885 53358 gene gene nrdC.8 53885 53358 CDS product NrdC.8 conserved hypothetical protein protein_id lcl|11079640_91 54248 53946 gene gene nrdC.9 54248 53946 CDS product NrdC.9 conserved hypothetical protein protein_id lcl|11079640_92 55320 54343 gene gene nrdC.10 55320 54343 CDS product NrdC.10 conserved hypothetical protein protein_id lcl|11079640_93 56445 55435 gene gene nrdC.11 gene_syn tk.-11 56445 55435 CDS product NrdC.11 conserved hypothetical protein protein_id lcl|11079640_94 56143 56143 Comment note Nucleotide 56143 is given as 'm', which by IUPAC code designates A or C. The base is in the third position of a codon that accepts full wobble and codes for valine from the (-) strand. A valine is conserved in this same position of NrdC.11 in the related phage RB69 (see http://phage.bioc.tulane.edu). 57208 56429 gene gene mobD gene_syn tk.-10 gene_syn nrdC.12 57208 56429 CDS product MobD Homing endonuclease prot_desc DNA endonuclease; H-N-H family; relative of mobile endonucleases of filamentous fungi protein_id lcl|11079640_95 57828 57283 gene gene mobD.1 gene_syn tk.-9 57828 57283 CDS product MobD.1 conserved hypothetical protein protein_id lcl|11079640_96 57932 57828 gene gene mobD.2 gene_syn tk.-8 57932 57828 CDS product MobD.2 conserved hypothetical protein protein_id lcl|11079640_97 58165 58049 gene gene mobD.2a 58165 58049 CDS product MobD.2a hypothetical protein protein_id lcl|11079640_98 58349 58155 gene gene mobD.3 gene_syn tk.-7 58349 58155 CDS product MobD.3 hypothetical protein protein_id lcl|11079640_99 58534 58352 gene gene mobD.4 gene_syn tk.-6 58534 58352 CDS product MobD.4 hypothetical protein protein_id lcl|11079640_100 58722 58534 gene gene mobD.5 gene_syn tk.-5 58722 58534 CDS product MobD.5 hypothetical protein protein_id lcl|11079640_101 59205 58819 gene gene rI.-1 gene_syn mobD.6 gene_syn tk.-3 and tk.-4 59205 58819 CDS product MobD.6 hypothetical protein protein_id lcl|11079640_102 59495 59202 gene gene rI gene_syn tk.-2 gene_syn mobD.8 59495 59202 CDS product rI Lysis inhibition regulator, membrane protein prot_desc Acts in concert with T4 t holin protein for lysis timing protein_id lcl|11079640_103 59720 59508 gene gene rI.1 gene_syn tk.-1 gene_syn mobD.9 59720 59508 CDS product rI.1 conserved hypothetical protein prot_desc Possible lysis inhibition component protein_id lcl|11079640_104 60344 59763 gene gene tk 60344 59763 CDS product Tk Thymidine kinase protein_id lcl|11079640_105 60534 60346 gene gene tk.1 60534 60346 CDS product Tk.1 conserved hypothetical protein protein_id lcl|11079640_106 60716 60531 gene gene tk.2 60716 60531 CDS product Tk.2 conserved hypothetical protein protein_id lcl|11079640_107 60925 60713 gene gene tk.3 60925 60713 CDS product Tk.2 conserved hypothetical protein protein_id lcl|11079640_108 61389 60922 gene gene tk.4 61389 60922 CDS product Tk.4 conserved hypothetical protein protein_id lcl|11079640_109 61733 61386 gene gene vs 61733 61386 CDS product Vs Valyl-tRNA synthetase modifier protein_id lcl|11079640_110 62271 61726 gene gene vs.1 gene_syn vs.2 62271 61726 CDS product Vs.1 conserved hypothetical protein protein_id lcl|11079640_111 62740 62279 gene gene regB 62740 62279 CDS product RegB Site-specific RNA endonuclease prot_desc Riboendonuclease cleaves a subset of T4 mRNAs at GGAG using r-protein S1 for recognition protein_id lcl|11079640_112 63078 62800 gene gene vs.3 63078 62800 CDS product Vs.3 conserved hypothetical protein protein_id lcl|11079640_113 63344 63078 gene gene vs.4 63344 63078 CDS product Vs.4 conserved hypothetical protein protein_id lcl|11079640_114 63557 63381 gene gene vs.5 63557 63381 CDS product Vs.5 conserved hypothetical protein protein_id lcl|11079640_115 63919 63557 gene gene vs.6 63919 63557 CDS product Vs.6 conserved hypothetical protein protein_id lcl|11079640_116 64256 63927 gene gene vs.7 64256 63927 CDS product Vs.7 conserved hypothetical protein protein_id lcl|11079640_117 64912 64253 gene gene vs.8 64912 64253 CDS product Vs.8 conserved hypothetical protein protein_id lcl|11079640_118 65355 64939 gene gene denV 65355 64939 CDS product DenV Endonuclease V, N-glycosylase UV repair enzyme prot_desc Bifunctional N-glycosylase and DNA endonulcease for repair of pyrimidine dimers protein_id lcl|11079640_119 65718 65416 gene gene ipII 65718 65416 CDS product IpII Internal head protein protein_id lcl|11079640_120 66415 65834 gene gene ipIII 66415 65834 CDS product IpIII Internal head protein protein_id lcl|11079640_121 66997 66503 gene gene e 66997 66503 CDS product e Lysozyme murein hydrolase prot_desc Intracellular N-acetyl muramidase; lysis from within protein_id lcl|11079640_122 67490 67035 gene gene nudE gene_syn e.1 67490 67035 CDS product NudE Nudix hydrolase prot_desc Nudix hydrolase active on FAD, diadenosine polyphosphates, ADP-ribose and NADH protein_id lcl|11079640_123 67960 67652 gene gene e.2 67960 67652 CDS product e.2 conserved hypothetical, predicted membrane protein protein_id lcl|11079640_124 68319 67957 gene gene e.3 68319 67957 CDS product e.3 conserved hypothetical, predicted membrane protein protein_id lcl|11079640_125 68693 68301 gene gene e.4 68693 68301 CDS product e.4 conserved hypothetical, predicted membrane protein protein_id lcl|11079640_126 69270 68662 gene gene e.5 69270 68662 CDS product e.5 conserved hypothetical protein protein_id lcl|11079640_127 69905 69312 gene gene e.6 69905 69312 CDS product e.6 conserved hypothetical protein protein_id lcl|11079640_128 70303 69968 gene gene e.7 70303 69968 CDS product e.7 hypothetical protein protein_id lcl|11079640_129 70346 70346 Comment note The base at 70346 is assigned an 's', which by IUPAC code designates C or G. Position 70346 is in a non-coding region, but is between the -10 and -35 region of the early promoter Pe70323. 70623 70360 gene gene e.8 70623 70360 CDS product e.8 conserved hypothetical protein protein_id lcl|11079640_130 71046 70908 RNA product rnaC note Small, stable RNA; species 1 RNA 71171 71053 RNA product rnaD note Small, stable RNA; species 2 RNA 71247 71173 tRNA product tRNA-Arg note tRNAR; arginyl-tRNA 71918 71253 gene gene segB gene_syn tRNA.1 71918 71253 CDS product SegB Homing endonuclease prot_desc Site-specific homing DNA endonuclease; GIY-YIG family protein_id lcl|11079640_131 72033 71960 tRNA product tRNA-Ile note tRNAI; isoleucyl-tRNA 72110 72035 tRNA product tRNA-Thr note tRNAT; threonyl-tRNA 72204 72118 tRNA product tRNA-Ser note tRNAS; serinyl-tRNA 72280 72207 tRNA product tRNA-Pro note tRNAP; prolyl-tRNA 72364 72291 tRNA product tRNA-Gly note tRNAG; glycyl-tRNA 72456 72370 tRNA product tRNA-Leu note tRNAL; leucyl-tRNA 72530 72458 tRNA product tRNA-Gln note tRNAQ; glutaminyl-tRNA 72915 72628 gene gene trna.2 72915 72628 CDS product Trna.2 conserved hypothetical protein protein_id lcl|11079640_132 73328 72918 gene gene trna.3 73328 72918 CDS product Trna.3 conserved hypothetical protein protein_id lcl|11079640_133 73514 73329 gene gene trna.4 73514 73329 CDS product Trna.4 conserved hypothetical predicted membrane protein protein_id lcl|11079640_134 73878 73591 gene gene ipI 73878 73591 CDS product IpI Internal head protein protein_id lcl|11079640_135 74410 73952 gene gene 57B 74410 73952 CDS product gp57B conserved hypothetical protein protein_id lcl|11079640_136 74649 74407 gene gene 57A 74649 74407 CDS product gp57A Chaperone for tail fiber formation prot_desc Molecular chaperone for both short and long tail fibers protein_id lcl|11079640_137 75374 74649 gene gene 1 75374 74649 CDS product gp1 dNMP kinase prot_desc Converts dTMP, dGMP and HMdCMP to diphosphates, not active on dAMP or dCMP protein_id lcl|11079640_138 75954 75424 gene gene 3 75954 75424 CDS product gp3 Tail completion and sheath stabilizer protein prot_desc Tail sheath stabilizer, terminator protein_id lcl|11079640_139 76885 76061 gene gene 2 gene_syn 64 76885 76061 CDS product gp2 DNA end protector protein prot_desc DNA end binding and protection protein_id lcl|11079640_140 77337 76885 gene gene 4 gene_syn 50 gene_syn 65 77337 76885 CDS product gp4 Head completion protein protein_id lcl|11079640_141 77385 77975 gene gene 53 77385 77975 CDS product gp53 Baseplate wedge subunit protein_id lcl|11079640_142 77959 79686 gene gene 5 77959 79686 CDS product gp5 Baseplate hub subunit and tail lysozyme prot_desc Tail lysozyme for penetration during infection and lysis from without protein_id lcl|11079640_143 78118 77981 gene gene repEB 78118 77981 CDS product RepEB oriE replication initiation protein protein_id lcl|11079640_144 79237 79085 gene gene repEA 79237 79085 CDS product RepEA oriE replication initiation protein protein_id lcl|11079640_145 79355 79355 rep_origin note DNA replication origin oriE; primer RNA is complement of gene 5 transcript; effective origin placed at 50 bases from start of early transcript from promoter Pe79405; also see repEB, repEA proteins direction (-) strand direction standard_name oriE 79721 80215 gene gene 5.1 79721 80215 CDS product gp5.1 conserved hypothetical protein protein_id lcl|11079640_146 80196 80618 gene gene segC 80196 80618 CDS product SegC Homing endonuclease prot_desc Site-specific DNA endonuclease; GIY-YIG family protein_id lcl|11079640_147 80621 80791 gene gene 5.3 80621 80791 CDS product gp5.3 conserved hypothetical protein prot_desc protein seen in RB49 but not RB69 protein_id lcl|11079640_148 80779 81072 gene gene 5.4 80779 81072 CDS product gp5.4 conserved hypothetical protein protein_id lcl|11079640_149 81081 83063 gene gene 6 81081 83063 CDS product gp6 Baseplate wedge subunit prot_desc Baseplate wedge protein_id lcl|11079640_150 83060 86158 gene gene 7 83060 86158 CDS product gp7 Baseplate wedge initiator prot_desc C-terminus is predicted integral membrane domain protein_id lcl|11079640_151 86151 87155 gene gene 8 86151 87155 CDS product gp8 Baseplate wedge subunit protein_id lcl|11079640_152 87219 88085 gene gene 9 87219 88085 CDS product gp9 Baseplate wedge tail fiber connector prot_desc Tail fiber connector and trigger for tail sheath contraction protein_id lcl|11079640_153 88085 89893 gene gene 10 88085 89893 CDS product gp10 Baseplate wedge subunit and tail pin protein_id lcl|11079640_154 89893 90552 gene gene 11 89893 90552 CDS product gp11 Baseplate wedge subunit and tail pin prot_desc Interface protein between baseplate wedge and gp12 short tail fibers; can be added later protein_id lcl|11079640_155 90549 92132 gene gene 12 90549 92132 CDS product gp12 Short tail fibers prot_desc responsible for irreversible adsorption to host cells; can be added after phage completion protein_id lcl|11079640_156 92129 93592 gene gene wac 92129 93592 CDS product Wac Fibritin neck whiskers prot_desc 'whisker' fibers at base of head; aid in long tail fiber attachment protein_id lcl|11079640_157 93624 94553 gene gene 13 93624 94553 CDS product gp13 Neck protein prot_desc Neck or collar protein protein_id lcl|11079640_158 94555 95325 gene gene 14 94555 95325 CDS product gp14 Neck protein prot_desc Neck or collar protein protein_id lcl|11079640_159 95367 96185 gene gene 15 95367 96185 CDS product gp15 Tail sheath stabilizer and completion protein prot_desc Connector protein to gp3 and/or gp19 protein_id lcl|11079640_160 96194 96688 gene gene 16 96194 96688 CDS product gp16 Terminase DNA packaging enzyme, small subunit protein_id lcl|11079640_161 96672 98504 gene gene 17 gene_syn q 96672 98504 CDS product gp17 Terminase DNA packaging enzyme, large subunit prot_desc DNA packaging enzyme, nuclease and ATPase activity; binds ssDNA, gp16 and gp20 protein_id lcl|11079640_162 96933 98504 gene gene 17'A 96933 98504 CDS product gp17'A unknown function prot_desc Internal transcription and in-frame translation of gene 17, has nucelase and ATPase activity but does not bind ssDNA protein_id lcl|11079640_163 96987 98504 gene gene 17'B 96987 98504 CDS product gp17'B unknown function prot_desc Internal transcription and in-frame translation of gene 17, has nucelase and ATPase activity but does not bind ssDNA protein_id lcl|11079640_164 97254 98504 gene gene 17'' 97254 98504 CDS product gp17'' unknown function prot_desc Internal transcription and in-frame translation of gene 17 protein_id lcl|11079640_165 98536 100515 gene gene 18 98536 100515 CDS product gp18 Tail sheath protein prot_desc Outer contractile sheath protein of phage tail protein_id lcl|11079640_166 100632 101123 gene gene 19 100632 101123 CDS product gp19 Tail tube protein prot_desc Inner tube protein of phage tail protein_id lcl|11079640_167 101207 102781 gene gene 20 101207 102781 CDS product gp20 Portal vertex protein of head prot_desc Head initiation complex; connects head to neck protein_id lcl|11079640_168 102781 103023 gene gene 67 gene_syn pip 102781 103023 CDS product gp67 Prohead core protein, precursor to internal peptides protein_id lcl|11079640_169 103023 103448 gene gene 68 103023 103448 CDS product gp68 Prohead core protein protein_id lcl|11079640_170 103448 104086 gene gene 21 103448 104086 CDS product gp21 Prohead core scaffold protein and protease protein_id lcl|11079640_171 103514 104086 gene gene 21' 103514 104086 CDS product gp21' Prohead core protease alternate start product prot_desc Internal translation initiation of gene 21 yields smaller protein protein_id lcl|11079640_172 104117 104926 gene gene 22 104117 104926 CDS product gp22 Prohead core scaffold protein prot_desc Head scaffolding protein,degraded by gp21 protease protein_id lcl|11079640_173 104945 106510 gene gene 23 104945 106510 CDS product gp23 Major head protein prot_desc Major head protein is cleaved by gp21 protease protein_id lcl|11079640_174 107232 106561 gene gene segD gene_syn 23.1 107232 106561 CDS product SegD Homing endonuclease prot_desc Site-specific DNA endonuclease; GIY-YIG family protein_id lcl|11079640_175 107323 108606 gene gene 24 gene_syn os 107323 108606 CDS product gp24 Head vertex protein prot_desc Pentameric vertex protein, cleaved by gp21 protein_id lcl|11079640_176 109640 108636 gene gene rnlB gene_syn 24.1 109640 108636 CDS product RnlB RNA ligase 2 prot_desc Second RNA ligase of T4, related to RNA editing enzymes protein_id lcl|11079640_177 109928 109650 gene gene 24.2 109928 109650 CDS product gp24.2 conserved hypothetical protein protein_id lcl|11079640_178 110085 109915 gene gene 24.3 110085 109915 CDS product gp24.3 conserved hypothetical protein protein_id lcl|11079640_179 111317 110187 gene gene hoc gene_syn eph 111317 110187 CDS product Hoc Head outer capsid protein prot_desc highly immunogenic supplemental capsid protein at the center of each capsomere protein_id lcl|11079640_180 112007 111327 gene gene inh gene_syn hoc.1 gene_syn lip 112007 111327 CDS product Inh Inhibitor of prohead protease gp21 protein_id lcl|11079640_181 112057 112674 gene gene segE gene_syn hoc.2 112057 112674 CDS product SegE Homing endonuclease prot_desc Site-specific DNA endonuclease; GIY-YIG family protein_id lcl|11079640_182 112677 114440 gene gene uvsW gene_syn dar 112677 114440 CDS product UvsW RNA-DNA and DNA-DNA helicase, ATPase prot_desc UV repair and recombination protein protein_id lcl|11079640_183 112677 114440 Region note For this section of the genome, sequence discrepancies were found. Entry BAT4INH was deemed more accurate than entry PT4UVSWD, based on a personal communication with Ken Kreuzer (3/19/90). 114663 114496 gene gene uvsY.-2 gene_syn W.1 114663 114496 CDS product UvsY.-2 conserved hypothetical protein protein_id lcl|11079640_184 114914 114690 gene gene uvsY.-1 gene_syn W.2 114914 114690 CDS product UvsY.-1 conserved hypothetical protein protein_id lcl|11079640_185 115327 114914 gene gene uvsY gene_syn fdsB 115327 114914 CDS product UvsY Recombination, repair and ssDNA binding protein prot_desc recombination protein,facilitates UvsX and inhibitor of EndoVII protein_id lcl|11079640_186 115321 115321 rep_origin note DNA replication origin oriE (oriuvsY); primer RNA is same as transcript for gene uvsY; origin placed a 50 bases from start of middle transcript from promoter Pm115371 direction (-) strand direction standard_name oriF 115802 115404 gene gene 25 115802 115404 CDS product gp25 Baseplate wedge subunit protein_id lcl|11079640_187 116428 115802 gene gene 26 116428 115802 CDS product gp26 Baseplate hub subunit protein_id lcl|11079640_188 116089 115802 gene gene 26' 116089 115802 CDS product gp26' Internal in-frame translation initiation protein_id lcl|11079640_189 116479 117228 gene gene 51 116479 117228 CDS product gp51 Baseplate hub assembly catalyst protein_id lcl|11079640_190 117228 118403 gene gene 27 117228 118403 CDS product gp27 Baseplate hub subunit protein_id lcl|11079640_191 118348 118881 gene gene 28 118348 118881 CDS product gp28 Baseplate hub distal subunit protein_id lcl|11079640_192 note N-terminal amino acid sequence determined for the gp28 hub subunit by F. Arisaka et al., Department of Molecular and Cellular Assembly, Tokyo Institute of Technology, Yokohama 226-8501, Japan; Unpublished observation 118878 120650 gene gene 29 118878 120650 CDS product gp29 Baseplate hub subunit, tail length determinator protein_id lcl|11079640_193 120659 121753 gene gene 48 120659 121753 CDS product gp48 Baseplate tail tube cap prot_desc Tail tube accessory protein protein_id lcl|11079640_194 121753 122715 gene gene 54 121753 122715 CDS product gp54 Baseplate tail tube initiator protein_id lcl|11079640_195 123032 122742 gene gene alt.-3 123032 122742 CDS product Alt.-3 conserved hypothetical protein protein_id lcl|11079640_196 123268 123065 gene gene alt.-2 123268 123065 CDS product Alt.-2 hypothetical protein prot_desc alt.-1 and alt.-2 together reflect an old duplication of the first part of gene alt, into which a stop codon and new start have been inserted, function unknown protein_id lcl|11079640_197 123450 123265 gene gene alt.-1 gene_syn 54.1 123450 123265 CDS product Alt.-1 hypothetical protein protein_id lcl|11079640_198 note alt.-1 and alt.-2 together appear to be a duplication of the first part of gene alt, into which a stop codon and new start have been inserted; function unknown 125502 123454 gene gene alt 125502 123454 CDS product Alt RNA polymerase ADP-ribosylase prot_desc Carried in the phage particle and ADP-ribosylates one of the two alpha subunits of RNA polymerase, as well as a number of other proteins, generally at lower levels. protein_id lcl|11079640_199 125748 125560 gene gene alt.1 125748 125560 CDS product Alt.1 conserved hypothetical protein protein_id lcl|11079640_200 127208 125745 gene gene 30 gene_syn lig 127208 125745 CDS product gp30 DNA ligase prot_desc ATP-dependent DNA ligase protein_id lcl|11079640_201 127474 127205 gene gene 30.1 127474 127205 CDS product gp30.1 conserved hypothetical protein protein_id lcl|11079640_202 128310 127474 gene gene 30.2 128310 127474 CDS product gp30.2 conserved hypothetical protein protein_id lcl|11079640_203 128765 128307 gene gene 30.3 128765 128307 CDS product gp30.3 conserved hypothetical protein protein_id lcl|11079640_204 128629 128402 gene gene 30.3' 128629 128402 CDS product gp30.3' hypothetical protein prot_desc Internal translation, in a different reading frame, within gene 30.3 protein_id lcl|11079640_205 128964 128758 gene gene 30.4 128964 128758 CDS product gp30.4 conserved hypothetical protein protein_id lcl|11079640_206 129158 128961 gene gene 30.5 129158 128961 CDS product gp30.5 hypothetical protein protein_id lcl|11079640_207 129445 129158 gene gene 30.6 129445 129158 CDS product gp30.6 conserved hypothetical protein protein_id lcl|11079640_208 129852 129487 gene gene 30.7 129852 129487 CDS product gp30.7 conserved hypothetical protein protein_id lcl|11079640_209 130253 129921 gene gene 30.8 gene_syn 31.-3 130253 129921 CDS product gp30.8 conserved hypothetical protein protein_id lcl|11079640_210 130540 130364 gene gene 30.9 gene_syn 31.-2 130540 130364 CDS product gp30.9 conserved hypothetical protein protein_id lcl|11079640_211 131033 130785 gene gene rIII gene_syn 31.-1 131033 130785 CDS product rIII Lysis inhibition accessory protein, rapid lysis phenotype protein_id lcl|11079640_212 131516 131181 gene gene 31 131516 131181 CDS product gp31 Head assembly cochaperone with GroEL prot_desc Replaces GroES as cochaperone with GroEL for head (gp23) assembly and also affects topoisomerase protein_id lcl|11079640_213 131881 131573 gene gene 31.1 131881 131573 CDS product gp31.1 conserved hypothetical protein protein_id lcl|11079640_214 132118 131882 gene gene 31.2 132118 131882 CDS product gp31.2 hypothetical protein protein_id lcl|11079640_215 132699 132118 gene gene cd 132699 132118 CDS product Cd dCMP deaminase prot_desc Allosteric enzyme activated by HM-dCTP and dCTP for dUMP synthesis protein_id lcl|11079640_216 133034 132696 gene gene cd.1 133034 132696 CDS product Cd.1 hypothetical protein protein_id lcl|11079640_217 133261 133031 gene gene cd.2 133261 133031 CDS product Cd.2 conserved hypothetical protein protein_id lcl|11079640_218 133300 133313 Comment note The sequence 133300 - 133313 was corrected from an inverted complement. Corrects the early promoter Pe133295 between cd.2 and cd.3. 133609 133334 gene gene cd.3 133609 133334 CDS product Cd.3 conserved hypothetical protein protein_id lcl|11079640_219 133812 133612 gene gene cd.4 133812 133612 CDS product Cd.4 conserved hypothetical protein protein_id lcl|11079640_220 134032 133805 gene gene cd.5 134032 133805 CDS product Cd.5 hypothetical protein protein_id lcl|11079640_221 134907 134002 gene gene pseT 134907 134002 CDS product PseT Polynucleotide 5'-kinase and 3'-phosphatase protein_id lcl|11079640_222 135135 134908 gene gene pseT.1 135135 134908 CDS product PseT.1 conserved hypothetical protein protein_id lcl|11079640_223 135431 135132 gene gene pseT.2 135431 135132 CDS product PseT.2 conserved hypothetical protein protein_id lcl|11079640_224 135175 135175 Comment note Nucleotide 135175 is noted as 'r', which by IUPAC code designates an A or G. Located in the middle position of the codon on the (-) strand, this would code for either Ile or Thr. The amino acid at this position of PseT.2 encoded by phage RB69 is Leu, and a similar hydrophobic cluster is seen in PseT.2 of phage RB49 and Aeh1 (see http://phage.bioc.tulane.edu). The 'X' residue at this site in T4 PseT.2 could be Ile. 135781 135428 gene gene pseT.3 135781 135428 CDS product PseT.3 conserved hypothetical predicted membrane protein protein_id lcl|11079640_225 136275 135772 gene gene alc gene_syn unf 136275 135772 CDS product Alc Inhibitor of host transcription prot_desc Attenuates elongation of transcription on cytosine-containing DNA, blocks transcription of host and other phages protein_id lcl|11079640_226 137464 136340 gene gene rnlA gene_syn 63 137464 136340 CDS product RnlA RNA ligase 1 and tail fiber attachment catalyst prot_desc tail fiber attachment and RNA ligase for repair of tRNA in restrictive prr hosts, in conjunction with PseT protein_id lcl|11079640_227 137951 137517 gene gene denA 137951 137517 CDS product DenA Endonuclease II prot_desc site-specific endonuclease II (EndoII) initiating degradation of cytosine-containing DNA protein_id lcl|11079640_228 139719 137955 gene gene nrdB 139719 139056 CDS 138457 137955 product NrdB Aerobic NDP reductase, small subunit (contains intron) protein_id lcl|11079640_229 139055 138458 intron note Intron in nrdB, also contains I-TevIII CDS (non-functional) function Group IA2 self-splicing intron number 1 standard_name nrdB Intron 138886 138593 gene gene I-TevIII 138886 138593 CDS product I-TevIII Homing endonuclease (defective) prot_desc Defective DNA endonuclease encoded by group 1A intron in nrdB, deletion in proximal half; H-N-H family; active I-TevIII homolog in T4-related phage RB3 protein_id lcl|11079640_230 139967 139716 gene gene nrdB.1 139967 139716 CDS product Nrd.1 hypothetical protein protein_id lcl|11079640_231 140416 139991 gene gene mobE gene_syn nrdB.2 140416 139991 CDS product MobE Homing endonuclease prot_desc DNA endonuclease; H-N-H family; relative of mobile endonucleases of filamentous fungi protein_id lcl|11079640_232 142680 140416 gene gene nrdA 142680 140416 CDS product NrdA Aerobic NDP reductase, large subunit protein_id lcl|11079640_233 142997 142671 gene gene nrdA.1 142997 142671 CDS product NrdA.1 conserved hypothetical protein protein_id lcl|11079640_234 143214 142951 gene gene nrdA.2 143214 142951 CDS product NrdA.2 conserved hypothetical protein protein_id lcl|11079640_235 145112 143235 gene gene td 145112 144564 CDS 143546 143235 product dTMP (thymidylate) synthase (contains intron) protein_id lcl|11079640_236 144563 143547 intron note Intron in td, also contains I-TevI CDS function Group IA2 self-splicing intron number 1 standard_name td intron 144431 143694 gene gene I-TevI 144431 143694 CDS product I-TevI Homing endonuclease prot_desc DNA endonuclease encoded by group 1A intron in td; GIY-YIG family protein_id lcl|11079640_237 145690 145109 gene gene frd 145690 145109 CDS product Frd Dihydrofolate reductase prot_desc Product is methyl donor used by dTMP synthase protein_id lcl|11079640_238 146004 145762 gene gene frd.1 146004 145762 CDS product Frd.1 conserved hypothetical protein protein_id lcl|11079640_239 146529 146143 gene gene frd.2 146529 146143 CDS product Frd.2 conserved hypothetical protein protein_id lcl|11079640_240 146802 146575 gene gene frd.3 146802 146575 CDS product Frd.3 hypothetical protein protein_id lcl|11079640_241 147853 146948 gene gene 32 147853 146948 CDS product gp32 Single-stranded DNA binding protein prot_desc DNA replication, recombination and repair protein, helix-destabilizing protein_id lcl|11079640_242 148541 147909 gene gene SegG gene_syn 32.1 148541 147909 CDS product SegG Homing endonuclease prot_desc Site-specific DNA endonuclease; GIY-YIG family protein_id lcl|11079640_243 149196 148543 gene gene 59 149196 148543 CDS product gp59 Loader of gp41 DNA helicase prot_desc DNA replication and recombination protein for loading gp41 on ssDNA with gp31 and UvsX protein_id lcl|11079640_244 149531 149193 gene gene 33 149531 149193 CDS product gp33 Late promoter transcription accessory protein prot_desc Connector protein between gp45 of replisome and gp55 late sigma factor protein_id lcl|11079640_245 149778 149509 gene gene dsbA 149778 149509 CDS product DsbA dsDNA binding protein, late transcription prot_desc Facilitates transcription from some late promoters protein_id lcl|11079640_246 150704 149787 gene gene rnh gene_syn das 150704 149787 CDS product RNaseH ribonuclease prot_desc DNA replication enzyme for processing of Okazaki fragment RNA primers protein_id lcl|11079640_247 150809 154678 gene gene 34 150809 154678 CDS product gp34 Long tail fiber, proximal subunit protein_id lcl|11079640_248 152947 152947 rep_origin note DNA replication origin oriG (ori34); primer RNA is opposite direction of adjacent gene 34 transcript; origin placed at 50 bases from start of middle transcript from promoter Pm153011 direction (-) strand direction standard_name oriG 154687 155805 gene gene 35 154687 155805 CDS product gp35 Hinge connector of long tail fiber, proximal connector protein_id lcl|11079640_249 155868 156533 gene gene 36 155868 156533 CDS product gp36 Hinge connector of long tail fiber, distal connector protein_id lcl|11079640_250 156542 159622 gene gene 37 156542 159622 CDS product gp37 Long tail fiber, distal subunit protein_id lcl|11079640_251 159649 160200 gene gene 38 159649 160200 CDS product gp38 Distal long tail fiber assembly catalyst prot_desc gp38 plays this role for the T4 subfamily of phages; for the T2 subfamily, the unrelated 'gp38' is the adhesion, binding to the distal end of the long tail fiber. protein_id lcl|11079640_252 160221 160877 gene gene t gene_syn stII gene_syn rV 160221 160877 CDS product t Holin lysis mediator prot_desc pore protein for T4 e lysozyme, controlling lysis timing and lysis inhibition, functions with rI protein protein_id lcl|11079640_253 161150 160878 gene gene asiA 161150 160878 CDS product AsiA Anti-sigma 70 protein prot_desc binds RNAP sigma 70 subunit, used together with MotA for activation of T4 middle promoters protein_id lcl|11079640_254 161315 161163 gene gene asiA.1 161315 161163 CDS product AsiA.1 hypothetical protein protein_id lcl|11079640_255 161590 161312 gene gene arn gene_syn asiA.1 161590 161312 CDS product Arn Inhibitor of MrcBC restriction endonuclease (anti-restriction nuclease) prot_desc anti-restriction nuclease, inhibits Rgl (MrcBC) nuclease that degrades non-glucosylated HMdC DNA protein_id lcl|11079640_256 161805 161674 gene gene arn.1 gene_syn motA.-5 gene_syn asiA.2 161805 161674 CDS product Arn.1 conserved hypothetical protein protein_id lcl|11079640_257 162172 161876 gene gene arn.2 gene_syn motA.-4 gene_syn asiA.3 162172 161876 CDS product Arn.2 conserved hypothetical protein protein_id lcl|11079640_258 162630 162172 gene gene arn.3 gene_syn motA.-3 gene_syn motA.-2 gene_syn asiA.4 + asiA.5 162630 162172 CDS product Arn.3 conserved hypothetical protein protein_id lcl|11079640_259 162833 162627 gene gene arn.4 gene_syn motA.-1 gene_syn asiA.6 + asiA.7 note 162830 162833 162627 CDS product Arn.4 conserved hypothetical protein protein_id lcl|11079640_260 163602 162967 gene gene motA gene_syn sip 163602 162967 CDS product MotA Activator of middle period transcription prot_desc Binds Mot boxes at T4 middle promoters, activates transcription, acts with AsiA protein_id lcl|11079640_261 163879 163730 gene gene motA.1 163879 163730 CDS product MotA.1 hypothetical predicted periplasmic protein protein_id lcl|11079640_262 165204 163876 gene gene 52 165204 163876 CDS product gp52 Topoisomerase II, medium subunit protein_id lcl|11079640_263 165349 165209 gene gene 52.1 note erroneously identified as ac, has been identified as hypothetical orf 52.1 165349 165209 CDS product gp52.1 conserved hypothetical predicted membrane protein protein_id lcl|11079640_264 165497 165342 gene gene ac 165497 165342 CDS product Ac Acridine resistance protein prot_desc predicted membrane protein protein_id lcl|11079640_265 165585 165505 gene gene stp 165585 165505 CDS product Stp Activator of host PrrC lysyl-tRNA endonuclease prot_desc Stp polypeptide (26 amino acids) activates host PrrC lysyl-tRNA restriction system, mutations suppress lethality on prr hosts of T4 PseT and RnlA tRNA repair defects protein_id lcl|11079640_266 166040 165585 gene gene ndd gene_syn D2b 166040 165585 CDS product Ndd Nucleoid disruption protein prot_desc binds host HU protein and host DNA to the membrane prior to degradation protein_id lcl|11079640_267 166316 166101 gene gene ndd.1 166316 166101 CDS product Ndd.1 conserved hypothetical protein protein_id lcl|11079640_268 166435 166325 gene gene ndd.2 166435 166325 CDS product Ndd.2 hypothetical predicted outer membrane protein protein_id lcl|11079640_269 166554 166432 gene gene ndd.2a 166554 166432 CDS product Ndd.2a hypothetical predicted periplasmic protein protein_id lcl|11079640_270 166628 166548 gene gene ndd.3 166628 166548 CDS product Ndd.3 hypothetical predicted inner membrane protein protein_id lcl|11079640_271 166764 166636 gene gene ndd.4 166764 166636 CDS product Ndd.4 hypothetical predicted inner membrane protein_id lcl|11079640_272 166913 166815 gene gene ndd.5 gene_syn denB.-2 166913 166815 CDS product Ndd.5 hypothetical predicted outer membrane protein protein_id lcl|11079640_273 166996 166910 gene gene ndd.6 gene_syn denB.-1 166996 166910 CDS product Ndd.6 conserved hypothetical predicted outer membrane protein protein_id lcl|11079640_274 167660 167103 gene gene denB 167660 167103 CDS product DenB DNA Endonuclease IV prot_desc Endonuclease targeting gaps and ssDNA in degradation of host DNA protein_id lcl|11079640_275 167937 167743 gene gene denB.1 167937 167743 CDS product DenB.1 hypothetical protein prot_desc orf denB.1 protein_id lcl|11079640_276 168903 167965 gene gene rIIB 168903 167965 CDS product rIIB Protector from prophage-induced early lysis prot_desc membrane integrity protector protein_id lcl|11079640_277 note mutants give rapid lysis on various lysogenic strains due to effects of specific prophage products, mistakenly interpreted as related to lysis inhibition