Three-dimensional models

Staphylococcus aureus protein structure

The solution structure of the Staphylococcus aureus RNase P protein, determined by NMR, from Spitzfaden, et al., 2000 JMB 295:105.

• S.aureus protein structure (PDB)
• S.aureus protein structure - one structure (kinemage)
• S.aureus protein structure - all structures (kinemage)
• S.aureus protein structure (GIF)

P4 structure

The solution structure (determined by NMR) of P4, wild-type and the C70U mutant both alone and as hexamine complexes, from Schmitz & Tinoco, RNA 2000 6:1212.

• Wild-type P4 (PDB)
• Wild-type P4 (GIF)
• C70U P4 (PDB)
• C70U P4 (GIF)
• Wild-type P4 - hexamine complex (PDB)
• Wild-type P4 - hexamine complex (GIF)
• C70U P4 - hexamine complex (PDB)
• C70U P4 - hexamine complex (GIF)

Bacillus subtilis protein structure

The crystal structure of the B. subtilis RNase P protein subunit from: Stams T, et al., Science 1998 280:752-755

• B.subtilis protein structure (PDB)
• B.subtilis protein structure (kinemage)
• B.subtilis protein structure (GIF format)
• B.subtilis protein structure (JPEG format)

Pace & collegues models

An updated set of models, all-atom, from Chen, et al., 1998 EMBO J 17: 1515-1525.

• E.coli RNase P RNA (PDB)
• E.coli RNase P RNA (kinemage)
• B.subtilis RNase P RNA (PDB)
• B.subtilis RNase P RNA (kinemage)
• Image file (GIF format)
• Image file (JPEG format)

An updated structure from Harris, et al., 1997, RNA 3, 561.

• Protein Database (PDB) format - phosphates only (text)
• JPEG format - ribbon view

The previous model from Harris, et al., 1994 EMBO J. 13:3953.

• Protein Database (PDB) format - phosphates only (text)
• GIF format - backbone & cylinder views
• Kinemage format - phosphates only (text)

Westhof & collegues models

A completely reworked model, from Christian Massire, et al., 1998, J. Mol. Biol.279:773.

• Escherichia coli RNase P RNA:pre-tRNA (PDB format)
• Escherichia coli RNase P RNA:pre-tRNA (kinemage format)
• Bacillus subtilis RNase P RNA:pre-tRNA (PDB format)
• Bacillus subtilis RNase P RNA:pre-tRNA (kinemage format)
• Ribbons image file - GIF format
• Ribbons image file - JPEG format

The previous model from Westhof & Altman, 1994 PNAS 91:5133.

• Protein Database (PDB) format - phosphates only (text)
• GIF format - phosphates only
• Kinemage format - phosphates only (text)

J15/16 models

MC-SYM models from Tom Easterwood & Steve Harvey, 1997 RNA 3:577.

Escherichia coli

• Protein Database (PDB) format - all atom (text)
• GIF format - all atom
• Kinemage format - backbone & bases (text)

Bacillus subtilis

• Protein Database (PDB) format - all atom (text)
• GIF format - all atom
• Kinemage format - backbone & bases (text)

Models of the E. coli P15/16 region based on NMR data - from Glemarec, et al, 1996, NAR., 24:2022.

• structure 1 (PDB format - text)
• structure 2 (PDB format - text)
• structure 3 (PDB format - text)
• structure 4 (PDB format - text)
• structure 5 (PDB format - text)
• structure 6 (PDB format - text)
• structure 7 (PDB format - text)
• structure 8 (PDB format - text)
• structure 9 (PDB format - text)