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Gamma Purple Bacteria RNase P sequences & structures
RNA secondary structures on this page are based on the model of Harris, et al., 2001 RNA 7:220.
| Organism | RNA | Protein | Comments | |||
| Genus/species | Strain |
Seq ID |
Seq citation ID |
Structure files |
rnpA |
|
| Acidothiobacillus ferrooxidans | .gb | .ct | .rnaml | .pdf | |||||
ATCC 23270 |
- NA - |
.gb | .ct | .rnaml | .pdf | ||||
| Azotobacter vinlandii | CA |
- NA - |
- NA - |
.gb | .ct | .rnaml | .pdf | partial | |
| Azotobacter paspali | 28333 |
- NA - |
- NA - |
.gb | .ct | .rnaml | | partial | |
| Azotobacter salinestris | 184 |
- NA - |
- NA - |
.gb | .ct | .rnaml | .pdf | partial | |
| Azotobacter chroococcum | ATCC 9043 |
- NA - |
- NA - |
.gb | .ct | .rnaml | | partial | |
| Azomonas macrocytogenes | 123 |
- NA - |
- NA - |
.gb | .ct | .rnaml | .pdf | partial | |
| Buchnera aphidocola | ||||||
SGS |
||||||
| Buchnera sp. | APS |
.gb | .ct | .rnaml | | ||||
| Allochromatium vinosum | HPC |
.gb | .ct | .rnaml | .pdf | ||||
| Haemophilus influenza | .gb | .ct | .rnaml | .pdf | |||||
| Klebsiella pneumoniae | .gb | .ct | .rnaml | .pdf | |||||
| Leclercia adecarboxylata | LBV 449 |
.gb | .ct | .rnaml | | partial | |||
| Escherichia coli | W3110 |
.gb | .ct | .rnaml | .pdf | ||||
| .gb | .ct | .rnaml | .pdf | ||||||
JM109 |
- NA - |
.gb | .ct | .rnaml | | ||||
0157:H7 EDL933 |
.gb | .ct | .rnaml | | |||||
0157:H7 RIMD 0509952 |
- ? - |
.gb | .ct | .rnaml | | ||||
| Erwinia agglomerulans | .gb | .ct | .rnaml | .pdf | |||||
| Pasteurella aerogenes | ATCC 27883 |
.gb | .ct | .rnaml | | partial | |||
| Providencia alcalifaciens | ATCC 9886 |
.gb | .ct | .rnaml | | partial | |||
| Plesiomonas shigelloides | M51 |
.gb | .ct | .rnaml | | partial | |||
| Proteus mirabilis | ||||||
| Proteus vulgaris | IFAM 1731 |
.gb | .ct | .rnaml | .pdf | partial | |||
| Pseudomonas aeruginosa | PAO1 |
- ? - |
.gb | .ct | .rnaml | .pdf | |||
| Pseudomonas fluorescens | type C |
.gb | .ct | .rnaml | .pdf | ||||
| Pseudomonas putida | IAM 1236 |
- NA - |
- NA - |
.gb | .ct | .rnaml | | partial | |
| Pseudomonas azotoformans | IAM 1603 |
- NA - |
- NA - |
.gb | .ct | .rnaml | | partial | |
| Pseudomonas stutzeri | IAM 12668 |
- NA - |
- NA - |
.gb | .ct | .rnaml | | partial | |
| Salmonella typhi | CT18 |
- NA - |
- NA - |
.gb | .ct | .rnaml | .pdf | - NA - |
|
| Salmonella typhimurium | LT-2 |
.gb | .ct | .rnaml | .pdf | ||||
| Serratia liquefaciens | JCM 1245 |
.gb | .ct | .rnaml | | partial | |||
| Serratia marcescens | .gb | .ct | .rnaml | .pdf | |||||
| Shewanella putrefaciens | MR-1 |
- NA - |
- NA - |
.gb | .ct | .rnaml | .pdf | ||
| Vibrio cholerae | N16961 |
- ? - |
.gb | .ct | .rnaml | .pdf | |||
| Yersinia pestis | CO-92 Orientalis |
- NA - |
- NA - |
.gb | .ct | .rnaml | .pdf | - NA - |
|
| Xyelella fastidiosa | .gb | .ct | .rnaml | | |||||
| volunteer ESH7-9 | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| volunteer ESH7-16 | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| volunteer ESH17b-7 | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| volunteer ESH20b-4 | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| volunteer ESH21b-4 | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Yellowstone Black Hole#145 | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Yellowstone Pit#126 | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Yellowstone Pit#131 | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Lake Griffy W #23 | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| volunteer PurpleX | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| volunteer Hge2 | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Salt Marsh A02 | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Salt Marsh A03 | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Salt Marsh A07 | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Salt Marsh A09(11) | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Salt Marsh A14(17) | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Salt Marsh A15(19) | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Salt Marsh A19(32) | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Salt Marsh A20(33) | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Salt Marsh A22(37) | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Salt Marsh A29(46) | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Salt Marsh A32(54) | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Salt Marsh A33(55) | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Salt Marsh A34(56) | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Salt Marsh A36(59) | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Salt Marsh A38(62) | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Salt Marsh A40(65) | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Salt Marsh A47(75) | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Salt Marsh A51(79) | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Salt Marsh A53(82) | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Compost Pile A54 | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Compost Pile A63 | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Compost Pile B139 | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Compost Pile B141 | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Compost Pile A52 | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Compost Pile B147 | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Compost Pile B71 | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Compost Pile B73 | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Compost Pile B74 | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Compost Pile B75 | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Compost Pile B80 | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Compost Pile B86 | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Salt Marsh B-B1 | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| uncharacterized N2 fixer DU1 | - NA - |
- NA - |
.gb | .ct | .rnaml | .pdf | partial | ||
| uncharacterized N2 fixer TP1 | - NA - |
- NA - |
.gb | .ct | .rnaml | .pdf | partial | ||
| uncharacterized N2 fixer UK2 | - NA - |
- NA - |
.gb | .ct | .rnaml | .pdf | partial | ||
| uncharacterized N2 fixer WC1 | - NA - |
- NA - |
.gb | .ct | .rnaml | .pdf | partial | ||
| uncharacterized N2 fixer SM1 | - NA - |
- NA - |
.gb | .ct | .rnaml | | partial | ||
| uncharacterized N2 fixer SM2 | - NA - |
- NA - |
.gb | .ct | .rnaml | | partial | ||
| uncharacterized N2 fixer WA1 | - NA - |
- NA - |
.gb | .ct | .rnaml | | partial | ||
| uncharacterized N2 fixer WB3 | - NA - |
- NA - |
.gb | .ct | .rnaml | | partial | ||
| uncharacterized N2 fixer UK5 | - NA - |
- NA - |
.gb | .ct | .rnaml | | partial | ||
| Vet School Drainage Water | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| drainage fluid | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||
| Salt Marsh A05 (= E.coli) | .gb | .ct | .rnaml | .pdf | environmental/partial | ||||