Publications
These papers are available as Adobe Acrobat (.pdf) files; just click on the file link to get the paper. They are also linked to their PubMed records if they exist; just click on the PubMed ID at the end of the reference to go there. If your site has an online subscription to that journal, you should be able to click on the journal name on the PubMed record page to get to the entire article directly.
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Brown JW, Jossinet F, Kachouri R, Lang BF, Leontis N, Steger G, Stombaugh J and Westhof E. The need for an RNA alignment ontology. (draft) | -- |
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Ellis JC, and Brown JW. The snoRNP database. (draft) | -- |
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Williams D, and Brown JW. Surprizing archaeal diversity in a municipal wastewater sludge. (draft) | -- |
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Betancourt DA, Loveless TM, Brown JW, and Bishop PE. Characterization of diazotrophs containing Mo-independent nitrogenases isolated from diverse environments.(submitted) | -- |
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Jones JM, Brown JW, Liehr SK, and Classen JJ. Detection of ammonia-oxiding Bacteria in eastern North Carolina swine-waste treatment systems. J Environ Qual (submitted) | -- |
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Ellis JC, Barnes J, and Brown JW. 2007 Is Alba an RNase P subunit? RNA Biology 4:xxx-xxx (in press) | -- |
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Leontis, N.B., Altman, R., Berman, H., Brenner, S.E., Brown, J.W., Engelke, D., Harvey, S.C., Holbrook, S.R., Jossinet, F., Lewis, S.E., Major, F., Methews, D.H., Richardson, J., Williamson, J.R., and Westhof, E. 2006 The RNA Ontology Consortium: An open invitation to the RNA community. RNA 12:533-541 (PubMed ID 16484377) | 63 |
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O'Rourke, L.G., Pitulle, C., Hegarty, B.C., Kraycirik, S., Killary, K.A., Grosenstein, P., Brown, J,W., and Breitschwerdt, E.B. 2005 Bartonella quintana in cynomolgus monkey (Macaca fascicularis). Emerg Infect Dis. 11:1931-1934 (PubMed ID 16485482) | 62 |
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Brown, J.W. and Ellis, J.C. 2005 Comparative analysis of RNA secondary structure: The 6S RNA. In Handbook of RNA Biochemistry {Wiley-VCH}, A. Bindereif, R. Hartmann, A. Schön, and E. Westhof, eds. | 61 |
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Marquez, S.M., Harris, J.K, Kelley, S.T., Brown, J.W., Dawson, S.C., Roberts, E.C. and Pace, N.R. 2005 Structural implications of novel diversity in eucaral RNase P RNA. RNA 11:739-751 PubMed ID 15811915 | 60 |
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Hall, T.A. and Brown, J.W.2004 Protein-protein interactions between archaeal RNase P protein subunits Archaea 1:247-253 PubMed ID 15810434 | 59 |
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Williams, D. and Brown, J.W. 2004 Artificial and evolutionary variation in an archaeal RNase P RNA. Archaea 1:241-245 PubMed ID 11233979 | 58 |
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Tran, E., Brown, J.W., and Maxwell, E.S. 2004 Evolutionary origins of the RNA-guided nucleotide modification complexes: From the primitive translational apparatus? Trends Biochem. Sci. 29:343-350 PubMed ID 15236741 | 57 |
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Ellis, J.C., and Brown, J.W. 2003 Genes with genes within Bacteria. Trends Biochem. Sci. 28:521-523 PubMed ID 145591679 | 56 |
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Hall TA, and Brown JW. 2002 Archaeal RNase P has multiple protein subunits homologous to eukaryotic nuclear RNase P proteins. RNA 8:296-306 Pubmed ID 12003490 | 55 |
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Andrews, A.J., Hall, T.A., and Brown, JW. 2002 Characterization of RNase P from Methanococcus jannaschii and Methanobacterium thermoautotrophicum. Biol. Chem. 382:1171-1177 PubMed ID 11592398 | 54 |
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Waugh A, Gendron P, Altman R, Brown JW, Case D, Gautheret D, Harvey SC, Leontis N, Westbrook J, Westhof E, Zuker M, Major F. 2002 RNAML: a standard syntax for exchanging RNA information. RNA 8:707-717 Pubmed ID 12088144 | 53 |
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Pitulle C, Strehse C, Brown JW, Breitschwerdt EB. 2002 Investigation of the phylogenetic relationships within the genus Bartonella based on comparative sequence analysis of the rnpB gene, 16S rDNA and 23S rDNA. Int J Syst Evol Microbiol 52:2075-2080 Pubmed ID 12508871 | 52 |
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Hall, T.A. and Brown, J.W. 2002 The ribonuclease P family. Meth. Enz. 341:56-77 PubMed ID 11582805 | 51 |
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Harris, J.K., Haas, E.S., Williams, D.A. and Brown, J.W. 2001 New insight into RNase P RNA structure from comparative analysis of the archaeal RNA. RNA 7:220-232 Pubmed ID 11233979 | 50 |
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Pannucci JA, Haas ES, Brown JW. 2000 An introduction to RNase P.In Ribozyme Biochemistry and Biotechnology. (Krupp G and Gaur RK, eds) Eaton Publ., Natick, MA. pp 89-110 | 49 |
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Pannucci, J.A., Haas, E.S., Hall, T., and Brown, J.W. 1999 RNase P RNAs from some Archaea are catalyically active. Proc. Natl. Acad. Sci. USA 96:7803-7808 Pubmed ID 10393902 | 48 |
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Brown, J.W. 1999 The ribonuclease P database. Nucl. Acids Res. 27:314 PubMed ID 9847214 | 47 |
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Andrews, A.J. and Brown, J.W. 1999 The partial purification of Methanococcus jannaschii RNase P holoenzyme. Nucl. Acids Symp. Ser. 41:60-62 | 46 |
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Hall, T.A. and Brown, J.W. 1999 An archaeal RNase P protein subunit is homologous to a eukaryotic nuclear protein. Nucl. Acids Symp. Ser. 41:92-94 | 45 |
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Hall., T.A. 1999 BioEdit:a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 41:95-98 | 44 |
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Williams, D and Brown, J.W. 1999 Characterization of chimeric archaeal RNase P RNAs.Nucl. Acids Symp. Ser. 41:184-186 | 43 |
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Haas, E.S. and Brown, J.W. 1998 Evolutionary variation in bacterial RNase P RNA. Nucl. Acids Res. 26:4093-4099 PubMed ID 9722626 | 42 |
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Brown, J.W.1998 The ribonuclease P database. Nucl. Acids Res. 26:351-352 PubMed ID 9399871 | 41 |
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Miller, E.D., Brown, J.W. and Hemenway, C. 1998 Stem-loop structure in the 5' region of potato virus X genome required for plus-strand RNA accumulation. J. Mol. Biol. 284:591-608 PubMed ID 9826501 | 40 |
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Selvamurugan, N., Joost, O. H., Haas, E. S., Brown, J. W., Galvin, N. J., and Eliceiri, G. L. 1997 Intracellular localization and unique conserved sequences of three small nucleolar RNAs. Nucl. Acids Res. 25:1591-1596 PubMed ID 9092667 | 39 |
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Pannucci, J., Haas, E.S. and Brown, J.W. 1997 RNase P cleavage assays using archaeal cell extracts and in vitro transcribed archaeal RNase P RNA. Nucl. Acids. Symp. Ser. 36:90-92 | 38 |
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Brown, J.W. 1997 The ribonuclease P database. Nucl. Acids Res. 25:263-264 PubMed ID 9016549 | 37 |
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Brown, J.W. and Haas, E.S. 1997 RNase P RNAs of green non-sulfur Bacteria. Nucl. Acids. Symp. Ser. 36:73-75 | 36 |
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Haas, E. S., Armbruster, D., Vucson, B., Daniels, C. J., and Brown, J. W. 1996 Comparative analysis of the ribonuclease P RNA structure in Archaea. Nucl. Acids Res. 24:1252-1259 PubMed ID 8614627 | 35 |
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Brown, J. W. and Haas, E. S. 1996 Ribonuclease P structure and function in Archaea. Mol. Biol. Reports 22:131-134 PubMed ID 8901499 | 34 |
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Haas, E. S., Banta, A. B., Harris, J. K., Pace, N. R., and Brown, J. W. 1996 Structure and evolution of ribonuclease P RNA in Gram-positive Bacteria. Nucl. Acids Res. 24:4775-4782 PubMed ID 8972865 | 33 |
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Brown, J. W., Nolan, J. M., Haas, E. S., Rubio, M. A., Major, F., and Pace, N. R. 1996 Comparative analysis of ribonuclease P RNA using gene sequences from natural microbial populations reveals tertiary structural elements. Proc. Natl. Acad. Sci. USA 94:3001-3006 PubMed ID 8610158 | 32 |
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Siegel, R.W., Banta, A.B., Haas, E.S., Brown, J.W., and Pace, N.R. 1996 Mycoplasma fermentans simplifies our view of the catalytic core of ribonuclease P RNA. RNA 2:452-462 PubMed ID 8665412 | 31 |
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Brown, J.W. 1996 The ribonuclease P database. Nucl. Acids Res. 24:236-237 PubMed ID 8594588 | 30 |
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Pace, N. R. and Brown, J. W. 1995 Evolutionary perspective on ribonuclease P structure and function. J. Bacteriol. 177:1919-1928 PubMed ID 7536728 | 29 |
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Haas, E. S., Brown, J. W., Pitulle, C., and Pace, N. R. 1994 Further perspective on the catalytic core and secondary structure of ribonuclease P RNA. Proc. Natl. Acad. Sci. USA 91:2527-2531 PubMed ID 7511814 | 28 |
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Harris, M. E., Nolan, J. N., Malhotra, A., Brown, J. W., Harvey, S. C., and Pace, N. R. 1994 Use of photoaffinity crosslinking and molecular modeling to analyze the global architecture of ribonuclease P RNA. EMBO J. 13:3953-3963 PubMed ID 7521297 | 27 |
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Brown, J. W., Haas, E. S., Gilbert, D. G., and Pace, N. R. 1994 The ribonuclease P database. Nucl. Acids Res. 22:3660-362 PubMed ID 7524025 | 26 |
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Brown, J. W., Haas, E. S., and Pace, N. R. 1993 Characterization of RNase P RNAs from thermophilic Bacteria. Nucl. Acids Res. 21:671-679 PubMed ID 7680125 | 25 |
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Brown, J. W. 1993 A toolkit for creating 3D RNA pencil models. CABIOS 9:465-467 PubMed ID 7691384 | 24 |
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Brown, J. W. 1993 A Macintosh hypercard compilation of small subunit ribosomal RNA sequences. CABIOS 9:473 PubMed ID 7691385 | 23 |
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Banta, A. B., Haas, E. S., Brown, J. W. and Pace, N. R. 1992 Sequence of the ribonuclease P RNA gene from the cyanobacterium Anacystis nidulans. Nucl. Acids Res. 20:911 PubMed ID 1371871 | 22 |
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Brown, J. W. and Pace, N. R. 1992 Ribonuclease P RNA and protein subunits from Bacteria. Nucl. Acids Res. 20:1451-1456 PubMed ID 1374553 | 21 |
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Darr, S. C., Brown, J. W. and Pace, N. R. 1992 The varieties of ribonuclease P. TIBS 17:178-182 PubMed ID 1375791 | 20 |
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Haas, E. S., Morse, D. P., Brown, J. W., Schmidt, F. J., and Pace, N. R. 1991 Long-range structure in ribonuclease P RNA. Science 254:853-856 PubMed ID 1719634 | 19 |
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Brown, J. W., Haas, E. S., James, B., Hunt, D. A, Liu, J., and Pace, N. R. 1991 Phylogenetic analysis and evolution of RNase P RNA in proteobacteria. J. Bacteriol. 173:3855-3863 PubMed ID 1711030 | 18 |
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Brown, J. W., Haas, E. S., Hunt, D. A, and Pace, N. R. 1991 Structure, function and evolution of ribonuclease P RNA, p. 289-299. In C. M. Cuchillo, R. de Llorens, M. V. Nogus and X. Pars (eds), Structure, Mechanism and Function of Ribonucleases, pp 289-299, IBF Publ., Barcelona. | 17 |
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Brown, J. W., Haas, E. S., and Pace, N. R. 1991 Structure and evolution of ribonuclease P RNA. Biochemie 73:689-697 PubMed ID 1722425 | 16 |
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Brown, J. W. 1991 Phylogenetic analysis of RNA structure on the Macintosh computer. CABIOS 7:391-393 PubMed ID 1717117 | 15 |
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Brown, J. W. 1991 Materials & Methods: A hypercard stack for laboratory protocols. CABIOS 7:397 PubMed ID 1913224 | 14 |
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Brown, J. W., Hunt, D. A, and Pace, N. R. 1990 Nucleotide sequence of the 10Sa RNA gene of the beta-purple eubacterium Alcaligenes eutrophus. Nucl. Acids Res. 18:2820 PubMed ID 1692615 | 13 |
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Haas, E. S., Brown. J. W., Daniels, C. J., and Reeve, J. N. 1990 Genes encoding 7S RNA and tRNA^Ser are linked to one of the two rRNA operons in the genome of the extremely thermophilic archaebacterium Methanothermus fervidus. Gene 90:51-59 PubMed ID 2116370 | 12 |
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Brown, J. W. 1990 Putting extreme tolerance to work. Cell 62:411-412 (book review) | 11 |
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Brown, J. W. and Reeve, J. N. 1989 Transcription initiation and a RNA polymerase binding site upstream of the purE gene of the archaebacterium Methanobacterium thermoautotrophicum strain deltaH. FEMS Microbiol. Lett. 60:131-136 PubMed ID 2550316 | 10 |
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Reeve, J. N., Beckler, G. S., Cram, D. S., Hamilton, P. T., Brown, J. W., Krzycki, J. A., Kolodziej, A., Alex, L., Orme-Johnson, W. H., and Walsh, C. T. 1989 A hydrogenase gene of Methanobacterium thermoautotrophicum encodes a poly-ferridoxin. Proc. Natl. Acad. Sci. USA 86:3031-3035 PubMed ID 2654933 | 9 |
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Thomm, M., Wich, G., Brown, J. W., Frey, G., Sherf, B. A., and Beckler, G. S. 1989 An archaebacterial promoter sequence assigned by RNA polymerase binding experiments. Can. J. Microbiol. 35:30-35 PubMed ID 2497942 | 8 |
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Brown, J. W., Daniels, C. J. and Reeve, J. N. 1989 Gene structure, organization and expression in archaebacteria. Crit. Rev. Microbiol. 16: 287-338 PubMed ID 2467783 | 7 |
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Brown, J. W., Thomm, M., Beckler, G. S., Stetter, K. O. and Reeve, J. N. 1988 RNA polymerase binding and transcription initiation upstream of the hisA gene of Methanococcus vannielii. Nucl. Acids Res. 16:135-149 PubMed ID 2829115 | 6 |
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Reeve, J. N., Beckler, G. S., Brown, J. W., Cram, D. S., Haas, E. S., Hamilton, P. T., Morris, C. J., Sherf, B. A. and Weil, C. F. 1987 Divergence of methanogens, conservation of the hisI gene sequence in all three biological Kingdoms and the status of Methanobacterium thermoautotrophicum. In Microbial Growth on C1 Compounds (Van Versveld, H.W. and Duine, J. A., eds). Martinus Nijhoff Publ. p.255-260 | 5 |
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Zydowsky, L. D., Zydowsky, T. M., Haas, E. S., Brown, J. W., Reeve, J. N. and Floss, H. G. 1987 Steriochemical course of methyl transfer from methanol to methyl coenzyme M in cell-free extracts of Methanosarcina barkeri. J. Amer. Chem. Soc. 109:7922-7923 | 4 |
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Brown, J. W. and Reeve, J. N. 1986 Polyadenylated RNA isolated from the archaebacterium Halobacterium halobium. J. Bacteriol. 166:686-688 PubMed ID 2422156 | 3 |
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Brown, J. W. and Reeve, J. N. 1985 Polyadenylated, non-capped RNA isolated from the archaebacterium Methanococcus vannielii. J. Bacteriol. 162:909-917 PubMed ID 2581934 | 2 |
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Brown, J. W., Treick, R. W. and Wilson, K. G. 1984 A method for isolating poly(A)-containing RNA from soybean suspension culture cells for cDNA synthesis and cloning. Soybean Genetics Newsletter 11:132-134 | 1 |
Additional papers by Elizabeth S. Haas
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LaGrandeur, T.E., Darr, S.C., Haas, E.S., and Pace, N.R. 1993 Characterization of the RNase P RNA of Sulfolobus acidocaldarius. J. Bacteriol. 175:5043-5048 PubMed ID 7688716 |
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Smith D, Burgin AB, Haas ES, Pace NR. 1992 Influence of metal ions on the ribonuclease P reaction. Distinguishing substrate binding from catalysis. J Biol Chem. 267:2429-2423 PubMed ID 1370819 |
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Nieuwlandt DT, Haas ES, Daniels CJ. 1991 The RNA component of RNase P from the archaebacterium Haloferax volcanii. J. Biol. Chem. 266:5689-5695 PubMed ID 1706337 |
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Haas ES, Daniels CJ, Reeve JN. 1989 Genes encoding 5S rRNA and tRNAs in the extremely thermophilic archaebacterium Methanothermus fervidus. Gene 77:253-263 PubMed ID 2473943 |
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Coplin DL, Frederick RD, Majerczak DR, Haas ES. 1986 Molecular cloning of virulence genes from Erwinia stewartii. J. Bacteriol. 168:619-623 PubMed ID 3782017 |
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Haas ES, Hook LA, Reeve JN. 1986 Antibiotic resistance caused by permiability changes of the archaebacterium Methanococcus vannielii. FEMS Microbiol. Lett. 33:185-188 |