[Protdist ---> Fitch phylogenetic tree] Program=\apps\Protdist.exe Don't use interface=0 Don't create menu item=0 Auto-Feed=1 Degap Sequences=0 Auto-Feed File Format=4 Auto-Feed File Name Required=1 Remove redundancies=1 Truncate titles=1 Change spaces in titles=1 Specific File Name=infile Prompt for Input File=0 Prompt for Output File=0 Open Output as Alignment=0 Open Output as Text=0 Open Output with External Program=0 External Program Name= Open Output with Accessory Application=0 Accessory Application to open with= Input File Prefix= Output File Prefix= Specify Input File Name=0 Specify Output File Name=0 Input File Name= Output File Name= Input File Prefix Required=0 Space after input prefix=0 Output File Prefix Required=0 Space after output prefix=0 Input File Name Arbitrary=0 Output File Name Arbitrary=0 Redirect input from stdin=0 Redirect output from stdout=0 Default Command Line= View Documentation Option=1 Documentation File=\apps\Protdist.doc Description=PROTDIST version 3.5c -- Program to compute distance matrix from protein sequences (c) Copyright 1993 by Joseph Felsenstein. Permission is granted to copy [the documentation] provided that no fee is charged for it and that this copyright notice is not removed. Include Additional Options Box=0 Redirect General stdout=0 Stdout Redirected Filename= Redirect General stdin=1 Stdin Redirected Filename=\apps\phylip.map Add input file to command line=0 Add output file to command line=0 output command at beginning=0 input command at beginning=0 output command at end=0 input command at end=0 Additional Output 0 Name=outfile Additional Output 0 Open as Text=1 Additional Output 0 Open as Alignment=0 Additional Output 0 Open with External Program=0 Additional Output 0 External Program Name= Additional Output 0 Open with Accessory Application=1 Additional Output 0 Accessory Application=Hidden Fitch link Additional Output 0 Rename File=1 Additional Output 0 New File Name=infile [Hidden Fitch link] Program=\apps\Fitch.exe Don't use interface=1 Don't create menu item=1 Auto-Feed=0 Degap Sequences=0 Auto-Feed File Format=0 Auto-Feed File Name Required=0 Remove redundancies=0 Truncate titles=0 Change spaces in titles=0 Specific File Name= Prompt for Input File=0 Prompt for Output File=0 Open Output as Alignment=0 Open Output as Text=0 Open Output with External Program=0 External Program Name= Open Output with Accessory Application=0 Accessory Application to open with= Input File Prefix= Output File Prefix= Specify Input File Name=0 Specify Output File Name=0 Input File Name= Output File Name= Input File Prefix Required=0 Space after input prefix=0 Output File Prefix Required=0 Space after output prefix=0 Input File Name Arbitrary=0 Output File Name Arbitrary=0 Redirect input from stdin=0 Redirect output from stdout=0 Default Command Line= View Documentation Option=1 Documentation File=\apps\Fitch.doc Description=FITCH version 3.5c -- Fitch-Margoliash and Least-Squares Distance Methods. (c) Copyright 1986-1993 by Joseph Felsenstein and by the University of Washington. Written by Joseph Felsenstein. Permission is granted to copy [the documentation] provided that no fee is charged for it and that this copyright notice is not removed. Include Additional Options Box=0 Redirect General stdout=0 Stdout Redirected Filename= Redirect General stdin=1 Stdin Redirected Filename=\apps\phylip.map Add input file to command line=0 Add output file to command line=0 output command at beginning=0 input command at beginning=0 output command at end=0 input command at end=0 Additional Output 0 Name=outfile Additional Output 0 Open as Text=1 Additional Output 0 Open as Alignment=0 Additional Output 0 Open with External Program=0 Additional Output 0 External Program Name= Additional Output 0 Open with Accessory Application=0 Additional Output 0 Accessory Application= Additional Output 0 Rename File=0 Additional Output 0 New File Name= Additional Output 1 Name=treefile Additional Output 1 Open as Text=0 Additional Output 1 Open as Alignment=0 Additional Output 1 Open with External Program=1 Additional Output 1 External Program Name=C:\Program Files\Rod Page\TreeView\treev32.exe Additional Output 1 Open with Accessory Application=0 Additional Output 1 Accessory Application= Additional Output 1 Rename File=0 Additional Output 1 New File Name=