[Lalign from FASTA package]
Program=<BioEdit>\apps\Lalign.exe
Don't use interface=1
Don't create menu item=0
Auto-Feed=1
Degap Sequences=1
Separate Files=1
Auto-Feed File Format=1
Auto-Feed File Name Required=1
Remove redundancies=0
Truncate titles=0
Change spaces in titles=0
Specific File Name=~lalign
Prompt for Input File=0
Prompt for Output File=0
Open Output as Alignment=0
Open Output as Text=1
Open Output with External Program=0
External Program Name=
Open Output with Accessory Application=0
Accessory Application to open with=
Input File Prefix=
Output File Prefix=-O
Specify Input File Name=0
Specify Output File Name=0
Input File Name=
Output File Name=
Input File Prefix Required=0
Space after input prefix=0
Output File Prefix Required=1
Space after output prefix=1
Input File Name Arbitrary=0
Output File Name Arbitrary=1
Redirect input from stdin=0
Redirect output from stdout=0
Default Command Line=
View Documentation Option=0
Documentation File=
Description=
Include Additional Options Box=0
Redirect General stdout=0
Stdout Redirected Filename=
Redirect General stdin=1
Stdin Redirected Filename=<BioEdit>\apps\lalign.std
Add input file to command line=0
Add output file to command line=1
output command at beginning=1
input command at beginning=0
output command at end=0
input command at end=0