[CAP contig assembly program]
Program=<BioEdit>\apps\cap.EXE
Auto-Feed=1
Degap Sequences=1
Auto-Feed File Format=1
Auto-Feed File Name Required=0
Specific File Name=
Prompt for Input File=0
Prompt for Output File=0
Open Output as Alignment=1
Open Output as Text=0
Open Output with External Program=0
External Program Name=
Input File Prefix=
Output File Prefix=
Specify Input File Name=1
Specify Output File Name=1
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Output File Name=
Input File Prefix Required=0
Output File Prefix Required=0
Input File Name Arbitrary=1
Output File Name Arbitrary=1
Redirect input from stdin=0
Redirect output from stdout=0
Default Command Line=>out.sto
View Documentation Option=1
Documentation File=<BioEdit>\apps\cap.doc
Description=CONTIG ASSEMBLY PROGRAM (CAP).  copyright (c) 1991.  The distribution of the program is granted provided no charge is made and the copyright notice is included.  Proper attribution of the author as the source of the software would be appreciated:  "A Contig Assembly Program Based on Sensitive Detection of Fragment Overlaps" (submitted to Genomics, 1991).  Xiaoqiu Huang.  Department of Computer Science.  Michigan Technological University.  Houghton, MI 49931.  E-mail: huang@cs.mtu.edu
Include Additional Options Box=1
Redirect General stdout=0
Stdout Redirected Filename=
Redirect General stdin=0
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i0 Title=Minimum base overlap (no. of bases)
i0 Prefix=
i0 Default=20
i0 CheckBox=0
i0 CheckBox Title=0
i0 CheckBox Default=0
i1 Title=Percent match (minimum)
i1 Prefix=
i1 Default=85
i1 CheckBox=0
i1 CheckBox Title=0
i1 CheckBox Default=0