Nucleic acid sequence Maximum Likelihood method, version 3.573c



Empirical Base Frequencies:

   A       0.26536
   C       0.22193
   G       0.30214
  T(U)     0.21057

Transition/transversion ratio =   2.000000

(Transition/transversion parameter =   1.459838)


  +B-clarridg
  !  
  !        +B--weissii
  !     +--9  
  !  +--6  +B-spp-Deer
  !  !  !  
  !  !  +B-bacillif
  !  !  
  !  !        +B--doshiae
  !  !     +--2  
-12--5     !  !  +B-henselae
  !  !     !  +-11  
  !  !  +-10     +B-quintana
  !  !  !  !  
  !  !  !  !     +B-grahamii
  !  !  !  !  +--8  
  !  +--7  +--1  +B-elizabet
  !     !     !  
  !     !     +B-birtlesi
  !     !  
  !     !  +B-vinsonii
  !     +--3  
  !        !  +B-berhoffi
  !        +--4  
  !           +B-arupensi
  !  
  +-----A-tumefaci


remember: (although rooted by outgroup) this is an unrooted tree!

Ln Likelihood = -11013.12203

Examined  604 trees

 Between        And            Length      Approx. Confidence Limits
 -------        ---            ------      ------- ---------- ------

  12          B-clarridg        0.01239     (  0.00864,     0.01614) **
  12             5              0.00590     (  0.00302,     0.00878) **
   5             6              0.00463     (  0.00230,     0.00696) **
   6             9              0.01029     (  0.00693,     0.01366) **
   9          B--weissii        0.00372     (  0.00175,     0.00572) **
   9          B-spp-Deer        0.00805     (  0.00521,     0.01089) **
   6          B-bacillif        0.01121     (  0.00769,     0.01474) **
   5             7              0.00947     (  0.00616,     0.01287) **
   7            10              0.00087     (     zero,     0.00189) **
  10             2              0.00057     (     zero,     0.00137) **
   2          B--doshiae        0.00446     (  0.00240,     0.00656) **
   2            11              0.00423     (  0.00215,     0.00632) **
  11          B-henselae        0.00572     (  0.00331,     0.00813) **
  11          B-quintana        0.01300     (  0.00944,     0.01656) **
  10             1              0.00168     (  0.00027,     0.00310) **
   1             8              0.00231     (  0.00077,     0.00391) **
   8          B-grahamii        0.00578     (  0.00341,     0.00820) **
   8          B-elizabet        0.01087     (  0.00760,     0.01412) **
   1          B-birtlesi        0.00835     (  0.00542,     0.01119) **
   7             3              0.00163     (  0.00037,     0.00295) **
   3          B-vinsonii        0.00441     (  0.00229,     0.00652) **
   3             4              0.00224     (  0.00071,     0.00377) **
   4          B-berhoffi        0.00415     (  0.00213,     0.00617) **
   4          B-arupensi        0.00344     (  0.00161,     0.00532) **
  12          A-tumefaci        0.09670     (  0.08679,     0.10743) **

     *  = significantly positive, P < 0.05
     ** = significantly positive, P < 0.01