14 Populations Fitch-Margoliash method version 3.573c Data set # 1: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B-bacillif ! +--8 ! ! ! +B-spp-Deer ! ! +-10 ! ! +B--weissii ! ! ! ! +B-elizabet ! ! +--6 ! ! +-12 +B-grahamii --5--3 ! ! ! ! ! +B-birtlesi ! ! +--7 ! ! ! ! +B--doshiae ! ! ! ! ! ! ! ! +--2 +B-arupensi ! ! +--1 ! +-11 ! ! ! ! +--4 +B-vinsonii ! ! ! ! ! ! +--9 ! +B-berhoffi ! ! ! ! ! +B-henselae ! ! ! +B-quintana ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.42540 Average percent standard deviation = 4.86140 examined 580 trees Between And Length ------- --- ------ 5 B-clarridg 0.01439 5 3 0.00264 3 8 0.00031 8 B-bacillif 0.01243 8 10 0.00974 10 B-spp-Deer 0.00764 10 B--weissii 0.00326 3 9 0.00524 9 1 0.00136 1 7 0.00131 7 12 0.00087 12 6 0.00182 6 B-elizabet 0.01035 6 B-grahamii 0.00585 12 B-birtlesi 0.01222 7 2 0.00021 2 B--doshiae 0.00410 2 4 0.00170 4 11 0.00079 11 B-arupensi 0.00459 11 B-vinsonii 0.00411 4 B-berhoffi 0.00554 1 B-henselae 0.00751 9 B-quintana 0.01114 5 A-tumefaci 0.09671 Data set # 2: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B--doshiae +-11 ! ! +B-grahamii ! +-12 +--8 +B-birtlesi ! ! ! ! +B-vinsonii ! +--4 +--1 ! +B-arupensi ! ! +--9 ! ! +B-berhoffi +--6 ! ! ! +B-elizabet ! ! ! ! +B-henselae ! +--7 ! +B-quintana ! ! +B-bacillif --5--2 ! ! +B-clarridg ! +--3 ! ! +B--weissii ! +-10 ! +B-spp-Deer ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.47875 Average percent standard deviation = 5.15724 examined 974 trees Between And Length ------- --- ------ 5 6 0.00500 6 1 0.00051 1 8 0.00080 8 11 0.00112 11 B--doshiae 0.00407 11 12 0.00039 12 B-grahamii 0.00662 12 B-birtlesi 0.00908 8 4 0.00136 4 B-vinsonii 0.00502 4 9 0.00167 9 B-arupensi 0.00422 9 B-berhoffi 0.00448 1 B-elizabet 0.00992 6 7 0.00093 7 B-henselae 0.00676 7 B-quintana 0.01044 5 2 0.00310 2 B-bacillif 0.01047 2 3 0.00174 3 B-clarridg 0.01372 3 10 0.01054 10 B--weissii 0.00537 10 B-spp-Deer 0.00733 5 A-tumefaci 0.10189 Data set # 3: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-henselae ! ! +B-grahamii ! +-11 +--9 ! +B-elizabet ! ! +--4 ! ! ! ! +B--doshiae ! ! ! +-10 ! +--8 +B-birtlesi ! ! +--2 ! +B-vinsonii ! ! +--1 ! ! ! +B-berhoffi ! ! +-12 ! ! +B-arupensi ! ! ! +B-quintana ! ! +B-clarridg ! ! --3--7 +B--weissii ! ! +--6 ! +--5 +B-spp-Deer ! ! ! +B-bacillif ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.25878 Average percent standard deviation = 3.79163 examined 932 trees Between And Length ------- --- ------ 3 2 0.00601 2 9 0.00084 9 B-henselae 0.00862 9 8 0.00069 8 4 0.00022 4 11 0.00176 11 B-grahamii 0.00772 11 B-elizabet 0.00928 4 10 0.00017 10 B--doshiae 0.00529 10 B-birtlesi 0.00741 8 1 0.00266 1 B-vinsonii 0.00395 1 12 0.00088 12 B-berhoffi 0.00434 12 B-arupensi 0.00336 2 B-quintana 0.01257 3 7 0.00122 7 B-clarridg 0.01704 7 5 0.00283 5 6 0.00842 6 B--weissii 0.00479 6 B-spp-Deer 0.00791 5 B-bacillif 0.01109 3 A-tumefaci 0.08968 Data set # 4: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-quintana +--4 ! +B-henselae ! ! +B-birtlesi +--5 +-12 ! ! ! ! +B-grahamii ! ! ! +--7 ! ! ! +B--doshiae ! +--3 ! ! +B-arupensi ! ! +--9 +--8 ! +--2 +B-berhoffi ! ! ! ! ! ! ! +--1 +B-vinsonii ! ! ! ! ! +B-elizabet ! ! ! ! +B-bacillif ! +-10 ! ! +B-spp-Deer ! +-11 ! +B--weissii ! --6B-clarridg ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.59406 Average percent standard deviation = 5.74487 examined 592 trees Between And Length ------- --- ------ 6 8 0.00149 8 5 0.00589 5 4 0.00200 4 B-quintana 0.01158 4 B-henselae 0.00602 5 3 0.00100 3 12 0.00126 12 B-birtlesi 0.00696 12 7 0.00034 7 B-grahamii 0.00582 7 B--doshiae 0.00518 3 1 0.00108 1 2 0.00130 2 9 0.00278 9 B-arupensi 0.00375 9 B-berhoffi 0.00245 2 B-vinsonii 0.00402 1 B-elizabet 0.01196 8 10 0.00156 10 B-bacillif 0.01418 10 11 0.00778 11 B-spp-Deer 0.00747 11 B--weissii 0.00523 6 B-clarridg 0.01553 6 A-tumefaci 0.08857 Data set # 5: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-vinsonii +--2 ! ! +B-berhoffi ! +--4 +--3 +B-arupensi ! ! ! ! +B--doshiae ! ! ! ! +-10 +B-elizabet +--1 ! +--8 ! ! +--6 +B-grahamii ! ! ! ! ! +B-birtlesi ! ! ! ! +B-henselae ! +--7 ! +B-quintana ! ! +B--weissii ! +-11 ! +--5 +B-spp-Deer ! ! ! --9-12 +B-clarridg ! ! ! +B-bacillif ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.32790 Average percent standard deviation = 4.26811 examined 558 trees Between And Length ------- --- ------ 9 1 0.00638 1 3 0.00201 3 2 0.00082 2 B-vinsonii 0.00447 2 4 0.00186 4 B-berhoffi 0.00398 4 B-arupensi 0.00302 3 10 0.00089 10 B--doshiae 0.00409 10 6 0.00071 6 8 0.00091 8 B-elizabet 0.00842 8 B-grahamii 0.00898 6 B-birtlesi 0.00744 1 7 0.00124 7 B-henselae 0.00554 7 B-quintana 0.01086 9 12 0.00419 12 5 0.00082 5 11 0.00932 11 B--weissii 0.00633 11 B-spp-Deer 0.00657 5 B-clarridg 0.01486 12 B-bacillif 0.01136 9 A-tumefaci 0.09568 Data set # 6: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-quintana ! +-11 +B-henselae ! ! ! ! ! ! +B-birtlesi ! +--3 +-12 ! ! +--9 +B-grahamii ! ! ! ! ! ! ! +B--doshiae ! +--5 ! ! +B-elizabet ! ! ! ! +--6 +B-arupensi ! ! +--8 ! +--4 +B-berhoffi ! ! ! +B-vinsonii ! ! +B--weissii ! +-10 ! ! +B-spp-Deer --7--2 ! ! +B-clarridg ! +--1 ! +B-bacillif ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.34797 Average percent standard deviation = 4.39678 examined 572 trees Between And Length ------- --- ------ 7 11 0.00281 11 B-quintana 0.01288 11 3 0.00191 3 B-henselae 0.00855 3 5 0.00112 5 9 0.00096 9 12 0.00044 12 B-birtlesi 0.00677 12 B-grahamii 0.00763 9 B--doshiae 0.00506 5 6 0.00092 6 B-elizabet 0.00955 6 4 0.00135 4 8 0.00076 8 B-arupensi 0.00201 8 B-berhoffi 0.00349 4 B-vinsonii 0.00422 7 2 0.00194 2 10 0.00587 10 B--weissii 0.00475 10 B-spp-Deer 0.00795 2 1 0.00021 1 B-clarridg 0.01440 1 B-bacillif 0.01310 7 A-tumefaci 0.08642 Data set # 7: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B-birtlesi ! +--5 ! ! +B--doshiae ! +--4 ! ! ! +B-vinsonii ! ! ! +-11 ! ! +--3 +B-arupensi ! +--2 ! ! ! ! +B-berhoffi ! ! ! ! ! ! +B-elizabet ! +--1 +-12 ! ! ! +B-grahamii ! ! ! ! ! ! +B-quintana --6--7 +--8 ! ! +B-henselae ! ! ! ! +B-bacillif ! +-10 ! ! +B-spp-Deer ! +--9 ! +B--weissii ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.24569 Average percent standard deviation = 3.69451 examined 906 trees Between And Length ------- --- ------ 6 B-clarridg 0.01433 6 7 0.00156 7 1 0.00665 1 2 0.00076 2 4 0.00026 4 5 0.00056 5 B-birtlesi 0.00540 5 B--doshiae 0.00330 4 3 0.00097 3 11 0.00055 11 B-vinsonii 0.00396 11 B-arupensi 0.00354 3 B-berhoffi 0.00475 2 12 0.00089 12 B-elizabet 0.01033 12 B-grahamii 0.00547 1 8 0.00236 8 B-quintana 0.01059 8 B-henselae 0.00591 7 10 0.00187 10 B-bacillif 0.00997 10 9 0.00874 9 B-spp-Deer 0.00658 9 B--weissii 0.00492 6 A-tumefaci 0.07967 Data set # 8: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! +--2 +B--weissii ! ! +-11 ! +--3 +B-spp-Deer ! ! ! +B-bacillif ! ! +B-henselae ! ! ! ! +B-vinsonii ! +--6 +--8 ! ! ! ! ! +B-arupensi ! ! ! ! +-10 ! ! ! ! +B-berhoffi ! ! +--5 ! ! ! +B-birtlesi --7--9 ! +-12 ! ! ! ! +B--doshiae ! ! +--1 ! ! ! +B-elizabet ! ! +--4 ! ! +B-grahamii ! ! ! +B-quintana ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.40503 Average percent standard deviation = 4.74358 examined 860 trees Between And Length ------- --- ------ 7 2 0.00329 2 B-clarridg 0.01810 2 3 0.00145 3 11 0.00823 11 B--weissii 0.00382 11 B-spp-Deer 0.00588 3 B-bacillif 0.01090 7 9 0.00453 9 6 0.00054 6 B-henselae 0.00749 6 5 0.00110 5 8 0.00201 8 B-vinsonii 0.00343 8 10 0.00237 10 B-arupensi 0.00162 10 B-berhoffi 0.00208 5 1 0.00103 1 12 0.00038 12 B-birtlesi 0.00615 12 B--doshiae 0.00255 1 4 0.00115 4 B-elizabet 0.00976 4 B-grahamii 0.00544 9 B-quintana 0.01244 7 A-tumefaci 0.09168 Data set # 9: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B-berhoffi ! +--5 ! ! ! +B-vinsonii ! ! +--2 ! ! +B-arupensi ! +--1 ! ! ! +B-grahamii ! ! ! +--7 ! ! ! +--8 +B-elizabet ! +--9 ! ! ! ! ! ! +--4 +B--doshiae ! ! ! ! ! +-12 ! +B-birtlesi ! ! ! ! ! ! ! +B-henselae -11--3 ! ! ! +B-quintana ! ! ! ! +B-bacillif ! +--6 ! ! +B--weissii ! +-10 ! +B-spp-Deer ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.25882 Average percent standard deviation = 3.79193 examined 648 trees Between And Length ------- --- ------ 11 B-clarridg 0.01202 11 3 0.00102 3 12 0.00481 12 9 0.00257 9 1 0.00047 1 5 0.00149 5 B-berhoffi 0.00774 5 2 0.00078 2 B-vinsonii 0.00593 2 B-arupensi 0.00377 1 4 0.00066 4 8 0.00007 8 7 0.00187 7 B-grahamii 0.00860 7 B-elizabet 0.00960 8 B--doshiae 0.00386 4 B-birtlesi 0.00753 9 B-henselae 0.00758 12 B-quintana 0.01030 3 6 0.00171 6 B-bacillif 0.01159 6 10 0.00839 10 B--weissii 0.00358 10 B-spp-Deer 0.00662 11 A-tumefaci 0.09218 Data set # 10: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B-bacillif ! +-12 ! ! ! +B--weissii ! ! +--8 ! ! +B-spp-Deer ! ! ! ! +B--doshiae ! ! +-10 ! ! ! +B-birtlesi --1--4 +--5 ! ! ! ! +B-vinsonii ! ! ! +--9 ! ! ! ! +B-berhoffi ! ! +--3 +-11 ! ! ! ! +B-arupensi ! ! ! ! ! ! ! ! +B-elizabet ! +--6 +--2 ! ! +B-grahamii ! ! ! ! +B-quintana ! +--7 ! +B-henselae ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.63550 Average percent standard deviation = 5.94183 examined 616 trees Between And Length ------- --- ------ 1 B-clarridg 0.01525 1 4 0.00125 4 12 0.00229 12 B-bacillif 0.01519 12 8 0.00635 8 B--weissii 0.00668 8 B-spp-Deer 0.00802 4 6 0.00780 6 3 0.00067 3 5 0.00063 5 10 0.00080 10 B--doshiae 0.00502 10 B-birtlesi 0.00688 5 9 0.00094 9 B-vinsonii 0.00433 9 11 0.00098 11 B-berhoffi 0.00453 11 B-arupensi 0.00397 3 2 0.00309 2 B-elizabet 0.01084 2 B-grahamii 0.00766 6 7 0.00217 7 B-quintana 0.01346 7 B-henselae 0.00734 1 A-tumefaci 0.09525 Data set # 11: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-quintana ! ! +B-birtlesi ! ! +--7 ! +B-grahamii ! ! +--1 +--4 ! ! ! ! +-12 +B-elizabet ! ! ! ! ! ! ! ! ! +--5 +B--doshiae ! +--2 ! ! ! +B-henselae ! ! ! ! +B-vinsonii ! +--6 ! ! +B-arupensi ! +-10 ! +B-berhoffi ! ! +B--weissii ! +--3 ! +--9 +B-spp-Deer ! ! ! -11--8 +B-bacillif ! ! ! +B-clarridg ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.45086 Average percent standard deviation = 5.00479 examined 1358 trees Between And Length ------- --- ------ 11 7 0.00475 7 B-quintana 0.01326 7 2 0.00283 2 1 0.00036 1 B-birtlesi 0.00742 1 5 0.00052 5 12 0.00106 12 4 0.00135 4 B-grahamii 0.00656 4 B-elizabet 0.00944 12 B--doshiae 0.00442 5 B-henselae 0.00793 2 6 0.00119 6 B-vinsonii 0.00448 6 10 0.00206 10 B-arupensi 0.00272 10 B-berhoffi 0.00378 11 8 0.00082 8 9 0.00330 9 3 0.00830 3 B--weissii 0.00365 3 B-spp-Deer 0.00725 9 B-bacillif 0.01249 8 B-clarridg 0.01362 11 A-tumefaci 0.09351 Data set # 12: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-vinsonii +--4 ! ! +B-berhoffi ! +-11 +--1 +B-arupensi ! ! ! ! +B-henselae ! ! ! ! +--2 +B-birtlesi ! ! +-10 +--8 ! ! +B--doshiae ! ! +--6 ! ! ! +B-elizabet ! ! +--7 ! ! +B-grahamii ! ! ! +B-quintana ! ! +B-clarridg --3--9 ! ! +B-bacillif ! +-12 ! ! +B--weissii ! +--5 ! +B-spp-Deer ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.38639 Average percent standard deviation = 4.63314 examined 594 trees Between And Length ------- --- ------ 3 8 0.00469 8 1 0.00162 1 4 0.00218 4 B-vinsonii 0.00436 4 11 0.00159 11 B-berhoffi 0.00262 11 B-arupensi 0.00308 1 2 0.00049 2 B-henselae 0.00615 2 6 0.00025 6 10 0.00054 10 B-birtlesi 0.00850 10 B--doshiae 0.00670 6 7 0.00145 7 B-elizabet 0.00999 7 B-grahamii 0.00651 8 B-quintana 0.00980 3 9 0.00137 9 B-clarridg 0.01524 9 12 0.00172 12 B-bacillif 0.00736 12 5 0.00919 5 B--weissii 0.00308 5 B-spp-Deer 0.00862 3 A-tumefaci 0.09269 Data set # 13: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-quintana ! ! +B-henselae +--4 ! ! ! ! +B-elizabet ! ! ! +-10 ! +-11 ! +B-grahamii ! ! +--7 ! ! ! ! +B-birtlesi ! ! ! +-12 ! +--3 +B--doshiae ! ! ! ! +B-vinsonii ! +--9 ! ! +B-arupensi ! +--8 ! +B-berhoffi ! ! +B-bacillif ! ! --2--5 +B-spp-Deer ! ! +--6 ! +--1 +B--weissii ! ! ! +B-clarridg ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.34874 Average percent standard deviation = 4.40164 examined 528 trees Between And Length ------- --- ------ 2 4 0.00493 4 B-quintana 0.01148 4 11 0.00099 11 B-henselae 0.00737 11 3 0.00116 3 7 0.00064 7 10 0.00163 10 B-elizabet 0.01097 10 B-grahamii 0.00773 7 12 0.00015 12 B-birtlesi 0.00776 12 B--doshiae 0.00514 3 9 0.00168 9 B-vinsonii 0.00425 9 8 0.00096 8 B-arupensi 0.00440 8 B-berhoffi 0.00350 2 5 0.00081 5 B-bacillif 0.01072 5 1 0.00073 1 6 0.00799 6 B-spp-Deer 0.00797 6 B--weissii 0.00273 1 B-clarridg 0.01806 2 A-tumefaci 0.08701 Data set # 14: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-elizabet +--2 ! +B-grahamii +--4 ! ! +B-birtlesi ! +--8 +--1 +B--doshiae ! ! ! ! +B-berhoffi ! ! +--7 +--5 +-10 +B-arupensi ! ! ! ! ! +B-vinsonii ! ! ! ! +B-quintana ! +--9 ! +B-henselae ! ! +B-bacillif ! +-11 ! ! ! +B--weissii --3--6 +-12 ! ! +B-spp-Deer ! ! ! +B-clarridg ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.61635 Average percent standard deviation = 5.85164 examined 626 trees Between And Length ------- --- ------ 3 5 0.00365 5 1 0.00140 1 4 0.00068 4 2 0.00170 2 B-elizabet 0.01167 2 B-grahamii 0.00563 4 8 0.00047 8 B-birtlesi 0.00812 8 B--doshiae 0.00458 1 10 0.00052 10 7 0.00252 7 B-berhoffi 0.00249 7 B-arupensi 0.00151 10 B-vinsonii 0.00431 5 9 0.00238 9 B-quintana 0.01062 9 B-henselae 0.00568 3 6 0.00184 6 11 0.00127 11 B-bacillif 0.00993 11 12 0.00701 12 B--weissii 0.00550 12 B-spp-Deer 0.00750 6 B-clarridg 0.01327 3 A-tumefaci 0.07807 Data set # 15: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-quintana ! ! +B-arupensi ! +--1 +--3 ! +B-berhoffi ! ! ! ! ! ! +B--doshiae ! ! ! +-11 ! +--2 +--7 +B-birtlesi ! ! ! ! ! ! +--9 +B-grahamii ! ! ! ! ! ! ! ! +B-elizabet ! +--6 +-10 ! ! +B-henselae ! ! ! +B-vinsonii ! ! +B-bacillif ! ! --4--8 +B-spp-Deer ! ! +-12 ! +--5 +B--weissii ! ! ! +B-clarridg ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.42195 Average percent standard deviation = 4.84168 examined 978 trees Between And Length ------- --- ------ 4 3 0.00589 3 B-quintana 0.01330 3 2 0.00134 2 1 0.00155 1 B-arupensi 0.00418 1 B-berhoffi 0.00332 2 6 0.00097 6 9 0.00068 9 7 0.00084 7 11 0.00005 11 B--doshiae 0.00297 11 B-birtlesi 0.00723 7 B-grahamii 0.00733 9 10 0.00068 10 B-elizabet 0.00915 10 B-henselae 0.00755 6 B-vinsonii 0.00394 4 8 0.00179 8 B-bacillif 0.01154 8 5 0.00132 5 12 0.00778 12 B-spp-Deer 0.00655 12 B--weissii 0.00435 5 B-clarridg 0.01339 4 A-tumefaci 0.08901 Data set # 16: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-bacillif +--4 ! ! +B-clarridg ! +-10 ! ! +B-spp-Deer ! +-11 ! +B--weissii ! ! +B--doshiae ! +--7 ! ! ! +B-grahamii ! +--6 +--9 ! ! ! +B-elizabet ! ! ! ! +--8 +B-birtlesi ! ! ! ! ! ! +B-vinsonii ! ! +--1 ! +--5 ! +B-arupensi ! ! ! +--2 ! ! ! +B-berhoffi --3-12 ! ! ! +B-henselae ! ! ! +B-quintana ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.32031 Average percent standard deviation = 4.21840 examined 792 trees Between And Length ------- --- ------ 3 4 0.00211 4 B-bacillif 0.01280 4 10 0.00067 10 B-clarridg 0.01608 10 11 0.00771 11 B-spp-Deer 0.00709 11 B--weissii 0.00411 3 12 0.00451 12 5 0.00179 5 8 0.00065 8 6 0.00144 6 7 0.00055 7 B--doshiae 0.00385 7 9 0.00096 9 B-grahamii 0.00623 9 B-elizabet 0.01067 6 B-birtlesi 0.00763 8 1 0.00114 1 B-vinsonii 0.00547 1 2 0.00220 2 B-arupensi 0.00372 2 B-berhoffi 0.00498 5 B-henselae 0.00915 12 B-quintana 0.01206 3 A-tumefaci 0.08511 Data set # 17: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-berhoffi +--5 +--3 +B-arupensi ! ! ! +B-vinsonii ! +--8 +B-elizabet ! ! +-12 ! ! +-11 +B-grahamii ! ! ! ! +--4 +--9 +B-birtlesi ! ! ! ! ! +B--doshiae ! ! ! ! +B-quintana ! +-10 ! +B-henselae ! ! +B-spp-Deer ! +--7 ! +--2 +B--weissii ! ! ! --1--6 +B-clarridg ! ! ! +B-bacillif ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.47647 Average percent standard deviation = 5.14497 examined 610 trees Between And Length ------- --- ------ 1 4 0.00413 4 8 0.00159 8 3 0.00142 3 5 0.00097 5 B-berhoffi 0.00544 5 B-arupensi 0.00356 3 B-vinsonii 0.00538 8 9 0.00047 9 11 0.00062 11 12 0.00151 12 B-elizabet 0.01046 12 B-grahamii 0.00584 11 B-birtlesi 0.00816 9 B--doshiae 0.00569 4 10 0.00268 10 B-quintana 0.00978 10 B-henselae 0.00572 1 6 0.00180 6 2 0.00108 2 7 0.00701 7 B-spp-Deer 0.00828 7 B--weissii 0.00392 2 B-clarridg 0.01348 6 B-bacillif 0.01445 1 A-tumefaci 0.09598 Data set # 18: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B--weissii +--6 +--7 +B-spp-Deer ! ! +-10 +B-bacillif ! ! ! +B-clarridg ! ! +B-henselae ! ! ! ! +B-grahamii ! ! +--9 ! +--4 ! ! +B-birtlesi ! ! ! +--8 +-11 ! ! ! ! ! +B--doshiae ! ! ! ! ! ! ! +--5 +B-elizabet ! ! ! --3-12 ! +B-arupensi ! ! ! +--2 ! ! +--1 +B-berhoffi ! ! ! ! ! +B-vinsonii ! ! ! +B-quintana ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.50262 Average percent standard deviation = 5.28428 examined 1012 trees Between And Length ------- --- ------ 3 10 0.00419 10 7 0.00079 7 6 0.00856 6 B--weissii 0.00454 6 B-spp-Deer 0.00686 7 B-bacillif 0.01261 10 B-clarridg 0.01317 3 12 0.00435 12 4 0.00209 4 B-henselae 0.00702 4 5 0.00119 5 8 0.00058 8 9 0.00124 9 B-grahamii 0.00521 9 11 0.00022 11 B-birtlesi 0.00516 11 B--doshiae 0.00384 8 B-elizabet 0.00812 5 1 0.00056 1 2 0.00244 2 B-arupensi 0.00360 2 B-berhoffi 0.00440 1 B-vinsonii 0.00666 12 B-quintana 0.01043 3 A-tumefaci 0.09466 Data set # 19: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B--weissii +--6 +--5 +B-spp-Deer ! ! +--4 +B-bacillif ! ! ! +B-clarridg ! ! +B-henselae ! +-12 ! ! +B-quintana ! ! -10--7 +B-vinsonii ! ! ! ! ! ! +B-berhoffi ! +--8 +-11 ! ! ! +B-arupensi ! ! ! ! +--2 +B--doshiae ! ! +--1 ! ! ! +B-birtlesi ! +--9 ! ! +B-elizabet ! +--3 ! +B-grahamii ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.49515 Average percent standard deviation = 5.24486 examined 1814 trees Between And Length ------- --- ------ 10 4 0.00370 4 5 0.00156 5 6 0.00754 6 B--weissii 0.00423 6 B-spp-Deer 0.00897 5 B-bacillif 0.01171 4 B-clarridg 0.01683 10 7 0.00379 7 12 0.00180 12 B-henselae 0.00682 12 B-quintana 0.01098 7 8 0.00086 8 B-vinsonii 0.00364 8 2 0.00045 2 11 0.00132 11 B-berhoffi 0.00286 11 B-arupensi 0.00334 2 9 0.00067 9 1 0.00022 1 B--doshiae 0.00402 1 B-birtlesi 0.00738 9 3 0.00143 3 B-elizabet 0.01110 3 B-grahamii 0.00490 10 A-tumefaci 0.09647 Data set # 20: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-henselae +--9 ! +B-quintana ! ! +B-grahamii ! +-12 ! ! +B--doshiae +--7 +--5 ! ! ! ! +B-berhoffi ! ! ! ! +-11 ! ! +--8 +--6 +B-arupensi ! ! ! ! ! ! ! ! ! +B-vinsonii ! +--4 ! ! ! +B-birtlesi ! ! ! +B-elizabet ! ! +B-spp-Deer ! +--1 ! +-10 +B--weissii ! ! ! --3--2 +B-clarridg ! ! ! +B-bacillif ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.31770 Average percent standard deviation = 4.20121 examined 570 trees Between And Length ------- --- ------ 3 7 0.00610 7 9 0.00160 9 B-henselae 0.00659 9 B-quintana 0.01191 7 4 0.00098 4 8 0.00074 8 5 0.00017 5 12 0.00141 12 B-grahamii 0.00738 12 B--doshiae 0.00632 5 6 0.00179 6 11 0.00077 11 B-berhoffi 0.00279 11 B-arupensi 0.00291 6 B-vinsonii 0.00348 8 B-birtlesi 0.00797 4 B-elizabet 0.01017 3 2 0.00144 2 10 0.00164 10 1 0.00850 1 B-spp-Deer 0.00819 1 B--weissii 0.00501 10 B-clarridg 0.01533 2 B-bacillif 0.01261 3 A-tumefaci 0.09386 Data set # 21: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B--weissii +--6 +-11 +B-spp-Deer ! ! +--4 +B-clarridg ! ! ! +B-bacillif ! ! +B-vinsonii ! +-10 ! ! ! +B-henselae ! ! +--9 ! ! +B-quintana ! ! --1--8 +B-arupensi ! ! +-12 ! ! ! +B-berhoffi ! ! +--5 ! ! ! ! +B-elizabet ! ! ! +--7 ! +--2 +B-grahamii ! ! ! ! +B--doshiae ! +--3 ! +B-birtlesi ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.62428 Average percent standard deviation = 5.88915 examined 534 trees Between And Length ------- --- ------ 1 4 0.00078 4 11 0.00242 11 6 0.00664 6 B--weissii 0.00422 6 B-spp-Deer 0.01048 11 B-clarridg 0.01826 4 B-bacillif 0.01337 1 8 0.00626 8 10 0.00056 10 B-vinsonii 0.00511 10 9 0.00231 9 B-henselae 0.00524 9 B-quintana 0.01276 8 2 0.00112 2 5 0.00013 5 12 0.00199 12 B-arupensi 0.00451 12 B-berhoffi 0.00399 5 7 0.00282 7 B-elizabet 0.00938 7 B-grahamii 0.00762 2 3 0.00100 3 B--doshiae 0.00573 3 B-birtlesi 0.00777 1 A-tumefaci 0.09248 Data set # 22: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-bacillif +--4 ! ! +B--weissii +--2 +--3 ! ! +B-spp-Deer ! ! ! +B-clarridg ! ! +B-arupensi ! +--1 ! +--5 +B-berhoffi ! ! ! ! ! +B-vinsonii ! +--6 ! ! ! +B--doshiae ! ! ! ! ! ! +--9 +B-elizabet ! +--7 ! +-11 ! ! ! +-10 +B-grahamii ! ! ! ! -12--8 ! +B-birtlesi ! ! ! ! ! +B-henselae ! ! ! +B-quintana ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.41009 Average percent standard deviation = 4.77312 examined 532 trees Between And Length ------- --- ------ 12 2 0.00042 2 4 0.00255 4 B-bacillif 0.01097 4 3 0.00781 3 B--weissii 0.00345 3 B-spp-Deer 0.00575 2 B-clarridg 0.01563 12 8 0.00591 8 7 0.00152 7 6 0.00112 6 5 0.00111 5 1 0.00256 1 B-arupensi 0.00293 1 B-berhoffi 0.00227 5 B-vinsonii 0.00404 6 9 0.00076 9 B--doshiae 0.00388 9 10 0.00045 10 11 0.00121 11 B-elizabet 0.00801 11 B-grahamii 0.00469 10 B-birtlesi 0.00871 7 B-henselae 0.00662 8 B-quintana 0.01060 12 A-tumefaci 0.08961 Data set # 23: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-berhoffi +--7 +--6 +B-arupensi ! ! ! +B-vinsonii ! +--4 +B-quintana ! ! ! ! ! ! +B-grahamii ! ! ! +-10 ! +--5 +--9 +B--doshiae ! ! ! ! ! ! +--3 +B-birtlesi ! ! ! ! ! +--1 +B-elizabet ! ! ! +B-henselae ! ! +B-bacillif --2--8 ! ! +B-clarridg ! +-11 ! ! +B--weissii ! +-12 ! +B-spp-Deer ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.24847 Average percent standard deviation = 3.71539 examined 718 trees Between And Length ------- --- ------ 2 4 0.00438 4 6 0.00107 6 7 0.00065 7 B-berhoffi 0.00364 7 B-arupensi 0.00286 6 B-vinsonii 0.00290 4 5 0.00009 5 B-quintana 0.01071 5 1 0.00093 1 3 0.00013 3 9 0.00040 9 10 0.00040 10 B-grahamii 0.00652 10 B--doshiae 0.00438 9 B-birtlesi 0.00864 3 B-elizabet 0.01033 1 B-henselae 0.00778 2 8 0.00148 8 B-bacillif 0.01092 8 11 0.00197 11 B-clarridg 0.01227 11 12 0.00681 12 B--weissii 0.00264 12 B-spp-Deer 0.00756 2 A-tumefaci 0.08727 Data set # 24: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-bacillif ! ! +B-quintana +-10 ! ! ! ! +B-birtlesi ! ! ! +-11 ! +-12 ! +B-vinsonii ! ! +--5 ! ! ! ! +B-berhoffi ! ! ! +--6 ! ! ! +B-arupensi ! +--2 +--7 ! +B-henselae ! ! ! +--4 ! ! ! ! +B-elizabet ! ! +--3 ! ! ! +B-grahamii ! ! +--9 ! ! +B--doshiae ! ! ! ! +B--weissii ! +--1 ! +B-spp-Deer ! --8B-clarridg ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.44999 Average percent standard deviation = 4.99992 examined 794 trees Between And Length ------- --- ------ 8 7 0.00148 7 10 0.00013 10 B-bacillif 0.01251 10 12 0.00638 12 B-quintana 0.01128 12 2 0.00201 2 5 0.00002 5 11 0.00082 11 B-birtlesi 0.00674 11 B-vinsonii 0.00726 5 6 0.00230 6 B-berhoffi 0.00393 6 B-arupensi 0.00277 2 3 0.00055 3 4 0.00128 4 B-henselae 0.00548 4 B-elizabet 0.00752 3 9 0.00099 9 B-grahamii 0.00779 9 B--doshiae 0.00541 7 1 0.00863 1 B--weissii 0.00498 1 B-spp-Deer 0.00672 8 B-clarridg 0.01486 8 A-tumefaci 0.09484 Data set # 25: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg +--7 ! ! +B-bacillif ! +--6 ! ! +B--weissii ! +-11 ! +B-spp-Deer ! ! +B-henselae ! +--4 ! ! +B-quintana ! ! ! ! +B-grahamii --2--1 +-10 ! ! +--9 +B-elizabet ! ! ! ! ! ! +--3 +B-birtlesi ! ! ! ! ! +--5 +B--doshiae ! ! ! ! +B-vinsonii ! +-12 ! ! +B-arupensi ! +--8 ! +B-berhoffi ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.40785 Average percent standard deviation = 4.76007 examined 498 trees Between And Length ------- --- ------ 2 7 0.00217 7 B-clarridg 0.01432 7 6 0.00261 6 B-bacillif 0.00890 6 11 0.00850 11 B--weissii 0.00329 11 B-spp-Deer 0.00691 2 1 0.00364 1 4 0.00227 4 B-henselae 0.00682 4 B-quintana 0.01218 1 5 0.00146 5 3 0.00048 3 9 0.00026 9 10 0.00132 10 B-grahamii 0.00566 10 B-elizabet 0.01414 9 B-birtlesi 0.00874 3 B--doshiae 0.00388 5 12 0.00087 12 B-vinsonii 0.00680 12 8 0.00150 8 B-arupensi 0.00413 8 B-berhoffi 0.00307 2 A-tumefaci 0.08597 Data set # 26: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-spp-Deer +--9 +--7 +B--weissii ! ! ! +B-bacillif ! ! +B-clarridg ! ! ! ! +B--doshiae ! ! +--6 ! ! ! ! +B-birtlesi ! ! ! +-10 --4--3 ! ! +B-elizabet ! ! +-11 +--1 ! ! ! ! +B-grahamii ! ! ! ! ! ! ! ! +B-arupensi ! ! ! ! +--8 ! +--5 +--2 +B-berhoffi ! ! ! ! ! +B-vinsonii ! ! ! ! +B-quintana ! +-12 ! +B-henselae ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.53334 Average percent standard deviation = 5.44332 examined 634 trees Between And Length ------- --- ------ 4 7 0.00174 7 9 0.00672 9 B-spp-Deer 0.00726 9 B--weissii 0.00214 7 B-bacillif 0.01112 4 3 0.00027 3 B-clarridg 0.01351 3 5 0.00457 5 11 0.00164 11 6 0.00081 6 B--doshiae 0.00469 6 10 0.00041 10 B-birtlesi 0.00748 10 1 0.00190 1 B-elizabet 0.01072 1 B-grahamii 0.00428 11 2 0.00090 2 8 0.00193 8 B-arupensi 0.00473 8 B-berhoffi 0.00447 2 B-vinsonii 0.00542 5 12 0.00225 12 B-quintana 0.00996 12 B-henselae 0.00704 4 A-tumefaci 0.08975 Data set # 27: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! +--2 +B--weissii ! ! +--6 ! +-10 +B-spp-Deer ! ! ! +B-bacillif ! ! +B-elizabet ! ! ! ! +B-birtlesi ! +--8 +--9 ! ! ! +--1 +B--doshiae ! ! ! ! ! ! ! +--4 +B-vinsonii ! ! ! ! ! ! +B-grahamii -11--5 +--3 ! ! ! +B-berhoffi ! ! +--7 ! ! +B-arupensi ! ! ! ! +B-quintana ! +-12 ! +B-henselae ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.45235 Average percent standard deviation = 5.01306 examined 1290 trees Between And Length ------- --- ------ 11 2 0.00185 2 B-clarridg 0.01331 2 10 0.00032 10 6 0.00916 6 B--weissii 0.00355 6 B-spp-Deer 0.00685 10 B-bacillif 0.01037 11 5 0.00488 5 8 0.00077 8 B-elizabet 0.01107 8 4 0.00089 4 1 0.00015 1 9 0.00015 9 B-birtlesi 0.00826 9 B--doshiae 0.00464 1 B-vinsonii 0.00337 4 3 0.00060 3 B-grahamii 0.00499 3 7 0.00130 7 B-berhoffi 0.00501 7 B-arupensi 0.00319 5 12 0.00136 12 B-quintana 0.00910 12 B-henselae 0.00540 11 A-tumefaci 0.08797 Data set # 28: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg +--4 ! ! +B-bacillif ! +-11 ! ! +B-spp-Deer ! +--9 ! +B--weissii ! ! +B-grahamii ! +--8 ! ! +B-elizabet ! +--2 ! ! ! +B-arupensi ! ! +--5 ! +--7 +B-berhoffi ! ! ! ! ! ! +B--doshiae ! +-12 +--1 ! ! ! +B-birtlesi ! ! ! -10--3 +B-vinsonii ! ! ! ! +B-henselae ! +--6 ! +B-quintana ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.51597 Average percent standard deviation = 5.35395 examined 590 trees Between And Length ------- --- ------ 10 4 0.00230 4 B-clarridg 0.01588 4 11 0.00092 11 B-bacillif 0.01059 11 9 0.01168 9 B-spp-Deer 0.00743 9 B--weissii 0.00347 10 3 0.00384 3 12 0.00137 12 7 0.00054 7 2 0.00028 2 8 0.00104 8 B-grahamii 0.00682 8 B-elizabet 0.01118 2 5 0.00223 5 B-arupensi 0.00394 5 B-berhoffi 0.00406 7 1 0.00042 1 B--doshiae 0.00580 1 B-birtlesi 0.00970 12 B-vinsonii 0.00489 3 6 0.00176 6 B-henselae 0.00573 6 B-quintana 0.00997 10 A-tumefaci 0.09547 Data set # 29: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg +--9 ! ! +B-bacillif ! +-11 ! ! +B-spp-Deer ! +-10 ! +B--weissii ! ! +B-birtlesi ! +--1 ! ! ! +B-grahamii ! ! +--7 ! +--2 +B--doshiae ! ! ! ! ! ! +B-berhoffi ! ! ! +--6 ! +--4 +-12 +B-arupensi ! ! ! ! ! ! ! +B-vinsonii --8--3 ! ! ! +B-elizabet ! ! ! ! +B-henselae ! +--5 ! +B-quintana ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.35289 Average percent standard deviation = 4.42776 examined 578 trees Between And Length ------- --- ------ 8 9 0.00069 9 B-clarridg 0.01640 9 11 0.00145 11 B-bacillif 0.00942 11 10 0.00635 10 B-spp-Deer 0.00854 10 B--weissii 0.00346 8 3 0.00764 3 4 0.00140 4 2 0.00037 2 1 0.00112 1 B-birtlesi 0.00641 1 7 0.00053 7 B-grahamii 0.00625 7 B--doshiae 0.00375 2 12 0.00088 12 6 0.00144 6 B-berhoffi 0.00395 6 B-arupensi 0.00305 12 B-vinsonii 0.00456 4 B-elizabet 0.01028 3 5 0.00170 5 B-henselae 0.00593 5 B-quintana 0.01237 8 A-tumefaci 0.08606 Data set # 30: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg +--6 ! ! +B-bacillif ! +--9 ! ! +B-spp-Deer ! +--4 ! +B--weissii ! ! +B-vinsonii ! +--5 ! ! ! +B-arupensi ! ! +--1 ! ! +B-berhoffi ! +--2 ! ! ! +B-elizabet ! ! ! +--7 ! ! ! +-12 +B-grahamii ! ! ! ! ! -11--8 +-10 +B--doshiae ! ! ! ! ! +B-birtlesi ! ! ! ! +B-henselae ! +--3 ! +B-quintana ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.56598 Average percent standard deviation = 5.60746 examined 554 trees Between And Length ------- --- ------ 11 6 0.00246 6 B-clarridg 0.01835 6 9 0.00084 9 B-bacillif 0.01041 9 4 0.00951 4 B-spp-Deer 0.00559 4 B--weissii 0.00311 11 8 0.00331 8 2 0.00240 2 5 0.00169 5 B-vinsonii 0.00340 5 1 0.00072 1 B-arupensi 0.00446 1 B-berhoffi 0.00474 2 10 0.00058 10 12 0.00053 12 7 0.00063 7 B-elizabet 0.01086 7 B-grahamii 0.00484 12 B--doshiae 0.00501 10 B-birtlesi 0.00694 8 3 0.00103 3 B-henselae 0.00709 3 B-quintana 0.01271 11 A-tumefaci 0.08989 Data set # 31: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-spp-Deer +--4 +--3 +B--weissii ! ! +--8 +B-bacillif ! ! ! +B-clarridg ! ! +B-quintana ! +-10 ! ! +B-henselae ! ! ! ! +B-arupensi -11--7 +--1 ! ! +--2 +B-berhoffi ! ! ! ! ! ! ! +B-vinsonii ! +--9 ! ! +B-birtlesi ! ! +--5 ! ! ! ! +B-elizabet ! +-12 +--6 ! ! +B-grahamii ! ! ! +B--doshiae ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.50594 Average percent standard deviation = 5.30166 examined 658 trees Between And Length ------- --- ------ 11 8 0.00274 8 3 0.00094 3 4 0.01052 4 B-spp-Deer 0.00577 4 B--weissii 0.00363 3 B-bacillif 0.01320 8 B-clarridg 0.01503 11 7 0.00560 7 10 0.00163 10 B-quintana 0.00981 10 B-henselae 0.00519 7 9 0.00068 9 2 0.00116 2 1 0.00250 1 B-arupensi 0.00342 1 B-berhoffi 0.00408 2 B-vinsonii 0.00615 9 12 0.00114 12 5 0.00061 5 B-birtlesi 0.00882 5 6 0.00165 6 B-elizabet 0.00886 6 B-grahamii 0.00534 12 B--doshiae 0.00605 11 A-tumefaci 0.09086 Data set # 32: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-bacillif ! ! +B-spp-Deer ! +--4 ! ! +B--weissii ! ! ! ! +B-quintana ! ! ! ! ! ! +B-berhoffi ! ! ! +-10 --5--2 ! +--3 +B-arupensi ! ! +--1 ! ! ! ! ! ! +--6 +B-vinsonii ! ! ! ! ! ! ! ! ! ! ! ! +B-elizabet ! ! ! ! ! +--7 ! ! ! ! ! ! +B-grahamii ! +-11 +--8 +--9 ! ! ! ! +B--doshiae ! ! ! +-12 ! ! ! +B-birtlesi ! ! ! ! ! +B-henselae ! ! ! +B-clarridg ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.60548 Average percent standard deviation = 5.79979 examined 1004 trees Between And Length ------- --- ------ 5 B-bacillif 0.01325 5 2 0.00135 2 4 0.00708 4 B-spp-Deer 0.01034 4 B--weissii 0.00386 2 11 0.00091 11 1 0.00547 1 B-quintana 0.01265 1 8 0.00183 8 6 0.00098 6 3 0.00118 3 10 0.00234 10 B-berhoffi 0.00294 10 B-arupensi 0.00326 3 B-vinsonii 0.00500 6 7 0.00061 7 B-elizabet 0.01253 7 9 0.00086 9 B-grahamii 0.00708 9 12 0.00015 12 B--doshiae 0.00483 12 B-birtlesi 0.00917 8 B-henselae 0.00745 11 B-clarridg 0.01690 5 A-tumefaci 0.09365 Data set # 33: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B-henselae ! +-10 ! ! +B-quintana ! ! ! ! +B-birtlesi ! +--6 +-12 ! ! ! ! +B--doshiae ! ! ! +--8 ! ! ! ! ! +B-grahamii ! ! ! ! +--5 ! ! +--2 +B-elizabet ! ! ! -11--9 ! +B-vinsonii ! ! +--4 ! ! ! +B-berhoffi ! ! +--3 ! ! +B-arupensi ! ! ! ! +B--weissii ! ! +--7 ! +--1 +B-spp-Deer ! ! ! +B-bacillif ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.54729 Average percent standard deviation = 5.51406 examined 580 trees Between And Length ------- --- ------ 11 B-clarridg 0.01410 11 9 0.00267 9 6 0.00689 6 10 0.00138 10 B-henselae 0.00724 10 B-quintana 0.01206 6 2 0.00114 2 8 0.00063 8 12 0.00038 12 B-birtlesi 0.00820 12 B--doshiae 0.00450 8 5 0.00170 5 B-grahamii 0.00639 5 B-elizabet 0.00861 2 4 0.00056 4 B-vinsonii 0.00509 4 3 0.00201 3 B-berhoffi 0.00507 3 B-arupensi 0.00363 9 1 0.00131 1 7 0.01043 7 B--weissii 0.00473 7 B-spp-Deer 0.00767 1 B-bacillif 0.01108 11 A-tumefaci 0.09370 Data set # 34: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! +-11 +B-spp-Deer ! ! +--5 ! +--3 +B--weissii ! ! ! +B-bacillif ! ! +B-vinsonii ! +--9 ! ! ! +B-arupensi ! ! +--2 ! +--1 +B-berhoffi ! ! ! ! ! ! +B-henselae ! ! +--4 ! ! ! +B--doshiae ! ! +-12 --8--7 ! +B-birtlesi ! ! +-10 ! ! ! +B-elizabet ! ! +--6 ! ! +B-grahamii ! ! ! +B-quintana ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.40524 Average percent standard deviation = 4.74484 examined 540 trees Between And Length ------- --- ------ 8 11 0.00236 11 B-clarridg 0.01682 11 3 0.00176 3 5 0.00934 5 B-spp-Deer 0.00670 5 B--weissii 0.00380 3 B-bacillif 0.01319 8 7 0.00234 7 1 0.00228 1 9 0.00098 9 B-vinsonii 0.00453 9 2 0.00171 2 B-arupensi 0.00437 2 B-berhoffi 0.00513 1 4 0.00123 4 B-henselae 0.00970 4 12 0.00032 12 B--doshiae 0.00585 12 10 0.00152 10 B-birtlesi 0.00721 10 6 0.00181 6 B-elizabet 0.00948 6 B-grahamii 0.00752 7 B-quintana 0.01186 8 A-tumefaci 0.08906 Data set # 35: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B--weissii +--6 +--4 +B-spp-Deer ! ! +--5 +B-bacillif ! ! ! +B-clarridg ! ! +B-grahamii ! +--1 ! +--3 +B-birtlesi ! ! ! ! +--2 +B--doshiae ! ! ! ! ! ! +B-elizabet ! ! +--7 ! ! ! +B-vinsonii --8-10 +--9 ! ! ! +B-arupensi ! ! +-12 ! ! +B-berhoffi ! ! ! ! +B-henselae ! +-11 ! +B-quintana ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.54455 Average percent standard deviation = 5.50028 examined 584 trees Between And Length ------- --- ------ 8 5 0.00202 5 4 0.00178 4 6 0.00934 6 B--weissii 0.00359 6 B-spp-Deer 0.00561 4 B-bacillif 0.01137 5 B-clarridg 0.01442 8 10 0.00581 10 2 0.00051 2 3 0.00177 3 1 0.00089 1 B-grahamii 0.00838 1 B-birtlesi 0.00682 3 B--doshiae 0.00353 2 7 0.00052 7 B-elizabet 0.01323 7 9 0.00157 9 B-vinsonii 0.00619 9 12 0.00277 12 B-arupensi 0.00297 12 B-berhoffi 0.00303 10 11 0.00209 11 B-henselae 0.00628 11 B-quintana 0.01102 8 A-tumefaci 0.09099 Data set # 36: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! +--5 +B--weissii ! ! +-12 ! +--3 +B-spp-Deer ! ! ! +B-bacillif ! ! +B--doshiae ! +-10 ! ! +B-birtlesi ! ! ! +--2 +B-grahamii ! ! ! +--6 ! ! ! ! +B-elizabet ! ! +--1 ! ! ! +B-vinsonii --4--8 +--9 ! ! ! +B-arupensi ! ! +--7 ! ! +B-berhoffi ! ! ! ! +B-quintana ! +-11 ! +B-henselae ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.34095 Average percent standard deviation = 4.35217 examined 584 trees Between And Length ------- --- ------ 4 5 0.00131 5 B-clarridg 0.01651 5 3 0.00329 3 12 0.00566 12 B--weissii 0.00459 12 B-spp-Deer 0.00511 3 B-bacillif 0.00865 4 8 0.00444 8 2 0.00107 2 10 0.00045 10 B--doshiae 0.00470 10 B-birtlesi 0.00620 2 1 0.00023 1 6 0.00119 6 B-grahamii 0.00585 6 B-elizabet 0.01085 1 9 0.00116 9 B-vinsonii 0.00258 9 7 0.00162 7 B-arupensi 0.00299 7 B-berhoffi 0.00351 8 11 0.00217 11 B-quintana 0.00929 11 B-henselae 0.00471 4 A-tumefaci 0.10070 Data set # 37: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B-bacillif ! +--8 ! ! ! +B--weissii ! ! +--5 ! ! +B-spp-Deer ! ! ! ! +B-henselae ! ! ! ! ! +--9 +B--doshiae --6--4 ! ! +-10 ! ! ! +-11 +B-grahamii ! ! +--1 ! ! ! ! ! +B-birtlesi ! ! ! ! ! ! +--3 +B-elizabet ! ! ! ! ! ! ! ! +B-berhoffi ! ! ! ! +--7 ! +-12 +--2 +B-arupensi ! ! ! ! ! +B-vinsonii ! ! ! +B-quintana ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.35784 Average percent standard deviation = 4.45872 examined 1016 trees Between And Length ------- --- ------ 6 B-clarridg 0.01632 6 4 0.00234 4 8 0.00199 8 B-bacillif 0.01042 8 5 0.00745 5 B--weissii 0.00466 5 B-spp-Deer 0.00674 4 12 0.00675 12 3 0.00143 3 1 0.00049 1 9 0.00048 9 B-henselae 0.00836 9 11 0.00032 11 10 0.00082 10 B--doshiae 0.00369 10 B-grahamii 0.00721 11 B-birtlesi 0.00586 1 B-elizabet 0.00835 3 2 0.00281 2 7 0.00157 7 B-berhoffi 0.00311 7 B-arupensi 0.00389 2 B-vinsonii 0.00574 12 B-quintana 0.01153 6 A-tumefaci 0.08498 Data set # 38: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-birtlesi +--4 ! ! +B-grahamii +--8 +-10 ! ! +B-elizabet ! ! +--9 +B--doshiae ! ! ! ! +B-vinsonii ! +-11 +--6 ! +B-arupensi ! ! +-12 ! ! +B-berhoffi ! ! ! ! +B-henselae ! +--3 ! +B-quintana ! ! +B-bacillif ! +--2 ! ! ! +B--weissii --5--7 +--1 ! ! +B-spp-Deer ! ! ! +B-clarridg ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.40221 Average percent standard deviation = 4.72707 examined 818 trees Between And Length ------- --- ------ 5 6 0.00444 6 9 0.00159 9 8 0.00021 8 4 0.00076 4 B-birtlesi 0.00980 4 10 0.00122 10 B-grahamii 0.00554 10 B-elizabet 0.00916 8 B--doshiae 0.00421 9 11 0.00125 11 B-vinsonii 0.00449 11 12 0.00117 12 B-arupensi 0.00380 12 B-berhoffi 0.00420 6 3 0.00124 3 B-henselae 0.00729 3 B-quintana 0.01231 5 7 0.00207 7 2 0.00062 2 B-bacillif 0.01191 2 1 0.00797 1 B--weissii 0.00519 1 B-spp-Deer 0.00801 7 B-clarridg 0.01433 5 A-tumefaci 0.09837 Data set # 39: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B--doshiae ! +--9 ! ! +B-birtlesi ! +--6 ! ! ! +B-grahamii ! ! +--7 ! +--2 +B-elizabet ! ! ! ! ! ! +B-henselae ! ! +--4 ! +--3 +B-quintana ! ! ! ! ! ! +B-berhoffi ! ! ! +--8 ! ! +--5 +B-arupensi -12--1 ! ! ! +B-vinsonii ! ! ! ! +B--weissii ! ! +-11 ! +-10 +B-spp-Deer ! ! ! +B-bacillif ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.47587 Average percent standard deviation = 5.14174 examined 658 trees Between And Length ------- --- ------ 12 B-clarridg 0.01562 12 1 0.00260 1 3 0.00704 3 2 0.00099 2 6 0.00061 6 9 0.00025 9 B--doshiae 0.00499 9 B-birtlesi 0.00751 6 7 0.00145 7 B-grahamii 0.00612 7 B-elizabet 0.01008 2 4 0.00281 4 B-henselae 0.00552 4 B-quintana 0.01128 3 5 0.00085 5 8 0.00208 8 B-berhoffi 0.00426 8 B-arupensi 0.00244 5 B-vinsonii 0.00474 1 10 0.00211 10 11 0.00717 11 B--weissii 0.00399 11 B-spp-Deer 0.00571 10 B-bacillif 0.01094 12 A-tumefaci 0.08358 Data set # 40: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg +--8 ! ! +B-bacillif ! +-11 ! ! +B-spp-Deer ! +-10 ! +B--weissii ! ! +B-vinsonii ! +--4 ! ! ! +B-arupensi ! ! +--3 ! +--6 +B-berhoffi ! ! ! ! ! ! +B-henselae ! ! ! ! ! ! +--2 +B-birtlesi ! ! ! +--9 --7-12 ! ! ! +B-grahamii ! ! +--1 +--5 ! ! ! +B-elizabet ! ! ! ! ! +B--doshiae ! ! ! +B-quintana ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.46683 Average percent standard deviation = 5.09266 examined 740 trees Between And Length ------- --- ------ 7 8 0.00067 8 B-clarridg 0.01591 8 11 0.00307 11 B-bacillif 0.01244 11 10 0.00723 10 B-spp-Deer 0.00851 10 B--weissii 0.00419 7 12 0.00465 12 6 0.00083 6 4 0.00105 4 B-vinsonii 0.00482 4 3 0.00218 3 B-arupensi 0.00360 3 B-berhoffi 0.00310 6 2 0.00125 2 B-henselae 0.00579 2 1 0.00047 1 9 0.00206 9 B-birtlesi 0.00776 9 5 0.00148 5 B-grahamii 0.00675 5 B-elizabet 0.01405 1 B--doshiae 0.00426 12 B-quintana 0.01352 7 A-tumefaci 0.08970 Data set # 41: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-bacillif +-11 ! ! +B-spp-Deer ! +--6 ! +B--weissii ! ! +B-clarridg ! ! ! ! +B--doshiae ! ! +--3 ! ! ! ! +B-birtlesi ! ! ! +--9 --5--4 ! ! +B-elizabet ! ! +--2 +-10 ! ! ! ! +B-grahamii ! ! ! ! ! ! ! ! +B-arupensi ! ! ! ! +--1 ! +--8 +--7 +B-berhoffi ! ! ! ! ! +B-vinsonii ! ! ! ! +B-quintana ! +-12 ! +B-henselae ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.56015 Average percent standard deviation = 5.57846 examined 512 trees Between And Length ------- --- ------ 5 11 0.00025 11 B-bacillif 0.00914 11 6 0.00807 6 B-spp-Deer 0.00501 6 B--weissii 0.00469 5 4 0.00092 4 B-clarridg 0.01364 4 8 0.00709 8 2 0.00097 2 3 0.00090 3 B--doshiae 0.00394 3 9 0.00094 9 B-birtlesi 0.00578 9 10 0.00104 10 B-elizabet 0.01053 10 B-grahamii 0.00577 2 7 0.00085 7 1 0.00109 1 B-arupensi 0.00270 1 B-berhoffi 0.00550 7 B-vinsonii 0.00565 8 12 0.00105 12 B-quintana 0.01140 12 B-henselae 0.00630 5 A-tumefaci 0.09736 Data set # 42: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg +-12 ! ! +B--weissii +--5 +-10 ! ! +B-spp-Deer ! ! ! +B-bacillif ! ! +B--doshiae ! +--8 ! ! ! +B-vinsonii ! ! +--2 ! ! ! +B-berhoffi ! +--1 +--7 ! ! ! +B-arupensi ! ! ! ! ! ! +B-birtlesi ! ! +--4 --9--3 ! +B-elizabet ! ! +-11 ! ! +B-grahamii ! ! ! ! +B-quintana ! +--6 ! +B-henselae ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.38760 Average percent standard deviation = 4.64040 examined 570 trees Between And Length ------- --- ------ 9 5 0.00259 5 12 0.00090 12 B-clarridg 0.01762 12 10 0.00765 10 B--weissii 0.00368 10 B-spp-Deer 0.00922 5 B-bacillif 0.01164 9 3 0.00424 3 1 0.00188 1 8 0.00024 8 B--doshiae 0.00482 8 2 0.00171 2 B-vinsonii 0.00293 2 7 0.00074 7 B-berhoffi 0.00481 7 B-arupensi 0.00219 1 4 0.00031 4 B-birtlesi 0.00975 4 11 0.00200 11 B-elizabet 0.00995 11 B-grahamii 0.00645 3 6 0.00215 6 B-quintana 0.01175 6 B-henselae 0.00565 9 A-tumefaci 0.09597 Data set # 43: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-bacillif +-11 ! ! +B-spp-Deer ! +--5 ! +B--weissii ! ! +B-clarridg ! ! --3--1 +B-henselae ! ! +--4 ! ! ! +B-quintana ! +--8 ! ! +B-vinsonii ! ! ! ! +--2 +B-elizabet ! ! ! ! +--6 +B-birtlesi ! ! ! ! +--7 +B-grahamii ! ! +--9 ! ! ! +B--doshiae ! +-10 ! ! +B-arupensi ! +-12 ! +B-berhoffi ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.54555 Average percent standard deviation = 5.50531 examined 1090 trees Between And Length ------- --- ------ 3 11 0.00027 11 B-bacillif 0.01014 11 5 0.01037 5 B-spp-Deer 0.00795 5 B--weissii 0.00275 3 1 0.00119 1 B-clarridg 0.01658 1 8 0.00583 8 4 0.00081 4 B-henselae 0.00813 4 B-quintana 0.01217 8 2 0.00119 2 B-vinsonii 0.00486 2 6 0.00020 6 B-elizabet 0.00822 6 7 0.00023 7 B-birtlesi 0.00937 7 10 0.00058 10 9 0.00089 9 B-grahamii 0.00710 9 B--doshiae 0.00510 10 12 0.00245 12 B-arupensi 0.00231 12 B-berhoffi 0.00539 3 A-tumefaci 0.09466 Data set # 44: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-arupensi +-10 +--3 +B-berhoffi ! ! ! +B-vinsonii +--1 ! ! +B-birtlesi ! ! +-11 ! ! ! +B--doshiae ! +--7 +--6 ! +B-henselae ! ! +-12 ! ! ! +B-elizabet ! ! +--8 ! ! +B-grahamii ! ! ! +B-quintana ! ! +B-clarridg ! ! --2--5 +B-spp-Deer ! ! +--9 ! +--4 +B--weissii ! ! ! +B-bacillif ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.66701 Average percent standard deviation = 6.08739 examined 884 trees Between And Length ------- --- ------ 2 6 0.00509 6 1 0.00237 1 3 0.00118 3 10 0.00319 10 B-arupensi 0.00375 10 B-berhoffi 0.00445 3 B-vinsonii 0.00541 1 7 0.00095 7 11 0.00038 11 B-birtlesi 0.00700 11 B--doshiae 0.00620 7 12 0.00081 12 B-henselae 0.00666 12 8 0.00175 8 B-elizabet 0.00944 8 B-grahamii 0.00656 6 B-quintana 0.01291 2 5 0.00333 5 B-clarridg 0.01812 5 4 0.00117 4 9 0.00851 9 B-spp-Deer 0.00672 9 B--weissii 0.00428 4 B-bacillif 0.01129 2 A-tumefaci 0.08239 Data set # 45: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-bacillif +-12 ! ! +B-clarridg ! +--9 ! ! +B-spp-Deer ! +-10 ! +B--weissii ! ! +B-quintana ! ! ! ! +B-henselae --6--3 ! ! ! ! +B-arupensi ! ! ! +--7 ! +--5 +--2 +B-berhoffi ! ! ! ! ! ! ! +B-vinsonii ! ! ! ! +--4 +B-birtlesi ! ! +-11 ! ! +--8 +B-grahamii ! ! ! ! ! +--1 +B-elizabet ! ! ! +B--doshiae ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.39151 Average percent standard deviation = 4.66377 examined 634 trees Between And Length ------- --- ------ 6 12 0.00168 12 B-bacillif 0.01054 12 9 0.00184 9 B-clarridg 0.01111 9 10 0.00807 10 B-spp-Deer 0.00732 10 B--weissii 0.00338 6 3 0.00280 3 B-quintana 0.01010 3 5 0.00095 5 B-henselae 0.00698 5 4 0.00112 4 2 0.00119 2 7 0.00152 7 B-arupensi 0.00293 7 B-berhoffi 0.00397 2 B-vinsonii 0.00456 4 1 0.00063 1 8 0.00078 8 11 0.00057 11 B-birtlesi 0.00722 11 B-grahamii 0.00698 8 B-elizabet 0.01093 1 B--doshiae 0.00477 6 A-tumefaci 0.09021 Data set # 46: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg +--8 ! ! +B-bacillif ! +--6 ! ! +B-spp-Deer ! +-11 ! +B--weissii ! ! +B--doshiae ! ! ! +--2 +B-grahamii ! ! ! +--7 ! ! +--1 +B-elizabet ! ! ! ! +--9 +B-birtlesi ! ! ! ! ! ! +B-arupensi ! ! ! +-12 ! +--4 +-10 +B-berhoffi ! ! ! ! ! ! ! +B-vinsonii --5--3 ! ! ! +B-henselae ! ! ! +B-quintana ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.33006 Average percent standard deviation = 4.28214 examined 576 trees Between And Length ------- --- ------ 5 8 0.00170 8 B-clarridg 0.01889 8 6 0.00138 6 B-bacillif 0.01043 6 11 0.00847 11 B-spp-Deer 0.00694 11 B--weissii 0.00546 5 3 0.00446 3 4 0.00110 4 9 0.00148 9 2 0.00081 2 B--doshiae 0.00586 2 1 0.00062 1 7 0.00125 7 B-grahamii 0.00712 7 B-elizabet 0.00858 1 B-birtlesi 0.00750 9 10 0.00247 10 12 0.00097 12 B-arupensi 0.00254 12 B-berhoffi 0.00216 10 B-vinsonii 0.00526 4 B-henselae 0.00620 3 B-quintana 0.01102 5 A-tumefaci 0.09472 Data set # 47: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg +--9 ! ! +B-bacillif ! +--3 ! ! +B-spp-Deer ! +--5 ! +B--weissii ! ! +B-quintana ! +--6 ! ! +B-henselae ! ! -10--4 +B-vinsonii ! ! +--1 ! ! ! ! +B-arupensi ! ! ! +--8 ! +--7 +B-berhoffi ! ! ! ! +B-elizabet ! ! ! ! +--2 +B-grahamii ! ! +-12 ! +-11 +B-birtlesi ! ! ! +B--doshiae ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.54912 Average percent standard deviation = 5.52329 examined 1004 trees Between And Length ------- --- ------ 10 9 0.00167 9 B-clarridg 0.01645 9 3 0.00071 3 B-bacillif 0.01283 3 5 0.00848 5 B-spp-Deer 0.00912 5 B--weissii 0.00278 10 4 0.00466 4 6 0.00247 6 B-quintana 0.01406 6 B-henselae 0.00704 4 7 0.00115 7 1 0.00080 1 B-vinsonii 0.00372 1 8 0.00237 8 B-arupensi 0.00289 8 B-berhoffi 0.00581 7 2 0.00077 2 B-elizabet 0.01306 2 11 0.00068 11 12 0.00179 12 B-grahamii 0.00585 12 B-birtlesi 0.00765 11 B--doshiae 0.00483 10 A-tumefaci 0.09748 Data set # 48: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-henselae +--2 ! +B-quintana ! +--6 +B-berhoffi ! ! +-11 ! ! +-10 +B-arupensi ! ! ! ! ! +--3 +B-vinsonii ! ! ! ! +B--doshiae ! +-12 ! ! +B-birtlesi ! +--7 ! ! +B-elizabet ! +--1 ! +B-grahamii ! ! +B-spp-Deer ! +--4 ! +--5 +B--weissii ! ! ! --8--9 +B-bacillif ! ! ! +B-clarridg ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.42212 Average percent standard deviation = 4.84261 examined 574 trees Between And Length ------- --- ------ 8 6 0.00353 6 2 0.00099 2 B-henselae 0.00772 2 B-quintana 0.01208 6 3 0.00105 3 10 0.00163 10 11 0.00118 11 B-berhoffi 0.00373 11 B-arupensi 0.00297 10 B-vinsonii 0.00403 3 12 0.00107 12 B--doshiae 0.00523 12 7 0.00059 7 B-birtlesi 0.00764 7 1 0.00144 1 B-elizabet 0.01077 1 B-grahamii 0.00543 8 9 0.00282 9 5 0.00126 5 4 0.00564 4 B-spp-Deer 0.00857 4 B--weissii 0.00583 5 B-bacillif 0.01333 9 B-clarridg 0.01534 8 A-tumefaci 0.08863 Data set # 49: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-henselae +--7 ! +B-quintana ! ! +B-birtlesi +--4 +--8 ! ! ! ! +B-grahamii ! ! +--3 +-12 ! ! ! ! +B-elizabet ! ! ! ! ! +--1 +B--doshiae ! ! ! ! +B-arupensi ! ! +--5 ! +--2 +B-berhoffi ! ! ! +B-vinsonii ! ! +B-spp-Deer ! +-11 ! +-10 +B--weissii ! ! ! --6--9 +B-bacillif ! ! ! +B-clarridg ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.40663 Average percent standard deviation = 4.75295 examined 938 trees Between And Length ------- --- ------ 6 4 0.00433 4 7 0.00181 7 B-henselae 0.00514 7 B-quintana 0.01236 4 1 0.00098 1 3 0.00059 3 8 0.00043 8 B-birtlesi 0.00747 8 12 0.00144 12 B-grahamii 0.00725 12 B-elizabet 0.00895 3 B--doshiae 0.00449 1 2 0.00104 2 5 0.00091 5 B-arupensi 0.00264 5 B-berhoffi 0.00456 2 B-vinsonii 0.00584 6 9 0.00218 9 10 0.00200 10 11 0.00594 11 B-spp-Deer 0.00691 11 B--weissii 0.00479 10 B-bacillif 0.01014 9 B-clarridg 0.01663 6 A-tumefaci 0.09488 Data set # 50: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-bacillif +--4 ! ! +B-clarridg ! +-11 ! ! +B-spp-Deer ! +-12 ! +B--weissii ! ! +B-henselae ! +--8 ! ! +B-quintana ! ! ! ! +B-vinsonii --3--1 +-10 ! ! ! ! +B-arupensi ! ! ! +--5 ! ! ! +B-berhoffi ! +--2 ! ! +B-birtlesi ! ! +--9 ! ! ! +B--doshiae ! +--6 ! ! +B-elizabet ! +--7 ! +B-grahamii ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.41567 Average percent standard deviation = 4.80550 examined 648 trees Between And Length ------- --- ------ 3 4 0.00203 4 B-bacillif 0.00889 4 11 0.00155 11 B-clarridg 0.01388 11 12 0.00780 12 B-spp-Deer 0.00724 12 B--weissii 0.00196 3 1 0.00466 1 8 0.00171 8 B-henselae 0.00516 8 B-quintana 0.00784 1 2 0.00181 2 10 0.00170 10 B-vinsonii 0.00428 10 5 0.00107 5 B-arupensi 0.00398 5 B-berhoffi 0.00372 2 6 0.00015 6 9 0.00051 9 B-birtlesi 0.00747 9 B--doshiae 0.00453 6 7 0.00284 7 B-elizabet 0.00792 7 B-grahamii 0.00528 3 A-tumefaci 0.08820 Data set # 51: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-henselae +-11 ! +B-quintana ! +--8 +B-berhoffi ! ! +--9 ! ! +--5 +B-arupensi ! ! ! ! ! +--3 +B-vinsonii ! ! ! ! +B-birtlesi ! +--2 ! ! +B--doshiae ! +--6 ! ! +B-elizabet ! +-12 ! +B-grahamii ! ! +B-clarridg --7--1 ! ! +B-bacillif ! +--4 ! ! +B--weissii ! +-10 ! +B-spp-Deer ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.67986 Average percent standard deviation = 6.14574 examined 634 trees Between And Length ------- --- ------ 7 8 0.00352 8 11 0.00353 11 B-henselae 0.00608 11 B-quintana 0.01092 8 3 0.00151 3 5 0.00136 5 9 0.00222 9 B-berhoffi 0.00383 9 B-arupensi 0.00367 5 B-vinsonii 0.00410 3 2 0.00140 2 B-birtlesi 0.00597 2 6 0.00106 6 B--doshiae 0.00421 6 12 0.00145 12 B-elizabet 0.00942 12 B-grahamii 0.00578 7 1 0.00121 1 B-clarridg 0.01528 1 4 0.00146 4 B-bacillif 0.01072 4 10 0.00708 10 B--weissii 0.00404 10 B-spp-Deer 0.01116 7 A-tumefaci 0.09146 Data set # 52: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-quintana ! ! +B-arupensi +--6 +-10 ! ! +--8 +B-berhoffi ! ! ! ! ! ! ! +B-vinsonii ! +--4 ! ! +B-elizabet ! ! +--1 ! ! ! +B-grahamii ! +--3 ! ! +B-birtlesi ! ! +-12 ! +--2 +B--doshiae ! ! ! +B-henselae ! ! +B-clarridg --5--9 ! ! +B-bacillif ! +--7 ! ! +B--weissii ! +-11 ! +B-spp-Deer ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.31762 Average percent standard deviation = 4.20064 examined 640 trees Between And Length ------- --- ------ 5 6 0.00351 6 B-quintana 0.00960 6 4 0.00327 4 8 0.00090 8 10 0.00255 10 B-arupensi 0.00266 10 B-berhoffi 0.00304 8 B-vinsonii 0.00497 4 3 0.00103 3 1 0.00103 1 B-elizabet 0.00963 1 B-grahamii 0.00687 3 2 0.00063 2 12 0.00071 12 B-birtlesi 0.00952 12 B--doshiae 0.00368 2 B-henselae 0.00677 5 9 0.00189 9 B-clarridg 0.01475 9 7 0.00181 7 B-bacillif 0.01148 7 11 0.00902 11 B--weissii 0.00330 11 B-spp-Deer 0.00710 5 A-tumefaci 0.09630 Data set # 53: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-quintana ! ! +B-henselae ! +-12 +--6 ! +B-elizabet ! ! +--5 ! ! ! ! +B-birtlesi ! ! ! +--9 ! ! ! ! +B--doshiae ! +--1 +--4 ! ! +B-grahamii ! ! ! ! +B-vinsonii ! +--7 ! ! +B-arupensi ! +--3 ! +B-berhoffi ! ! +B-clarridg -10-11 ! ! +B-bacillif ! +--8 ! ! +B--weissii ! +--2 ! +B-spp-Deer ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.38079 Average percent standard deviation = 4.59945 examined 672 trees Between And Length ------- --- ------ 10 6 0.00691 6 B-quintana 0.01224 6 1 0.00107 1 5 0.00088 5 12 0.00106 12 B-henselae 0.00753 12 B-elizabet 0.01127 5 9 0.00068 9 B-birtlesi 0.00889 9 4 0.00012 4 B--doshiae 0.00579 4 B-grahamii 0.00721 1 7 0.00267 7 B-vinsonii 0.00453 7 3 0.00228 3 B-arupensi 0.00220 3 B-berhoffi 0.00400 10 11 0.00154 11 B-clarridg 0.01255 11 8 0.00038 8 B-bacillif 0.01100 8 2 0.00658 2 B--weissii 0.00426 2 B-spp-Deer 0.00724 10 A-tumefaci 0.08585 Data set # 54: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-bacillif +-12 ! ! +B--weissii +--5 +-11 ! ! +B-spp-Deer ! ! ! +B-clarridg ! ! +B--doshiae ! +--9 ! +--1 +B-birtlesi ! ! ! ! +--3 +B-henselae ! ! ! ! ! ! +B-grahamii ! +--2 +--4 ! ! ! +B-elizabet ! ! ! ! ! ! +B-vinsonii --8--6 +--7 ! ! ! +B-arupensi ! ! +-10 ! ! +B-berhoffi ! ! ! +B-quintana ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.44576 Average percent standard deviation = 4.97638 examined 620 trees Between And Length ------- --- ------ 8 5 0.00191 5 12 0.00103 12 B-bacillif 0.01289 12 11 0.00569 11 B--weissii 0.00320 11 B-spp-Deer 0.00620 5 B-clarridg 0.01429 8 6 0.00385 6 2 0.00193 2 3 0.00050 3 1 0.00070 1 9 0.00047 9 B--doshiae 0.00357 9 B-birtlesi 0.00713 1 B-henselae 0.00718 3 4 0.00124 4 B-grahamii 0.00421 4 B-elizabet 0.00999 2 7 0.00119 7 B-vinsonii 0.00459 7 10 0.00131 10 B-arupensi 0.00230 10 B-berhoffi 0.00490 6 B-quintana 0.00884 8 A-tumefaci 0.09329 Data set # 55: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! +-12 +B-spp-Deer ! ! +--8 ! +--4 +B--weissii ! ! ! +B-bacillif ! ! +B-quintana ! ! ! ! +B-vinsonii ! ! +--6 --7--2 ! ! +B-arupensi ! ! ! +--9 ! ! ! +B-berhoffi ! ! ! ! +--1 +B-grahamii ! ! +-10 ! ! ! +B-elizabet ! ! +--5 ! ! ! ! +B--doshiae ! +--3 +-11 ! ! +B-birtlesi ! ! ! +B-henselae ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.57302 Average percent standard deviation = 5.64218 examined 614 trees Between And Length ------- --- ------ 7 12 0.00209 12 B-clarridg 0.01301 12 4 0.00296 4 8 0.00752 8 B-spp-Deer 0.00630 8 B--weissii 0.00360 4 B-bacillif 0.00866 7 2 0.00282 2 B-quintana 0.00975 2 1 0.00260 1 6 0.00198 6 B-vinsonii 0.00356 6 9 0.00142 9 B-arupensi 0.00400 9 B-berhoffi 0.00340 1 3 0.00137 3 5 0.00070 5 10 0.00179 10 B-grahamii 0.00521 10 B-elizabet 0.00949 5 11 0.00062 11 B--doshiae 0.00390 11 B-birtlesi 0.00680 3 B-henselae 0.00727 7 A-tumefaci 0.09241 Data set # 56: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-bacillif +-12 ! ! +B-clarridg ! +--7 ! ! +B--weissii ! +--1 ! +B-spp-Deer ! ! +B-henselae ! ! ! ! +B-grahamii ! ! +--3 ! +--5 +--6 +B-birtlesi ! ! ! ! ! ! ! ! +--8 +B-elizabet ! ! ! ! ! ! ! ! ! +B--doshiae ! ! +-10 --2--9 ! +B-arupensi ! ! ! +-11 ! ! +--4 +B-berhoffi ! ! ! ! ! +B-vinsonii ! ! ! +B-quintana ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.44417 Average percent standard deviation = 4.96751 examined 552 trees Between And Length ------- --- ------ 2 12 0.00243 12 B-bacillif 0.01238 12 7 0.00040 7 B-clarridg 0.01646 7 1 0.00721 1 B--weissii 0.00367 1 B-spp-Deer 0.00773 2 9 0.00472 9 5 0.00202 5 B-henselae 0.00538 5 10 0.00097 10 8 0.00030 8 6 0.00123 6 3 0.00061 3 B-grahamii 0.00583 3 B-birtlesi 0.00587 6 B-elizabet 0.00828 8 B--doshiae 0.00376 10 4 0.00103 4 11 0.00191 11 B-arupensi 0.00165 11 B-berhoffi 0.00385 4 B-vinsonii 0.00420 9 B-quintana 0.01235 2 A-tumefaci 0.09282 Data set # 57: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! +-10 +B--weissii ! ! +--9 ! +--7 +B-spp-Deer ! ! ! +B-bacillif ! ! +B-henselae ! ! ! ! +B-birtlesi ! +--6 +--1 ! ! ! ! ! +B--doshiae ! ! ! ! +--2 ! ! +--8 +B-grahamii ! ! ! ! ! ! +B-elizabet -12--3 +--4 ! ! ! +B-vinsonii ! ! +--5 ! ! ! +B-berhoffi ! ! +-11 ! ! +B-arupensi ! ! ! +B-quintana ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.29193 Average percent standard deviation = 4.02722 examined 656 trees Between And Length ------- --- ------ 12 10 0.00143 10 B-clarridg 0.01688 10 7 0.00145 7 9 0.00959 9 B--weissii 0.00362 9 B-spp-Deer 0.01038 7 B-bacillif 0.01126 12 3 0.00685 3 6 0.00117 6 B-henselae 0.00573 6 8 0.00101 8 1 0.00045 1 B-birtlesi 0.00844 1 2 0.00036 2 B--doshiae 0.00441 2 B-grahamii 0.00899 8 4 0.00026 4 B-elizabet 0.00820 4 5 0.00178 5 B-vinsonii 0.00479 5 11 0.00131 11 B-berhoffi 0.00310 11 B-arupensi 0.00310 3 B-quintana 0.01093 12 A-tumefaci 0.08680 Data set # 58: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B--weissii +--9 +--8 +B-spp-Deer ! ! +--7 +B-clarridg ! ! ! +B-bacillif ! ! +B-henselae ! +-12 ! ! +B-quintana ! ! --5--2 +B-arupensi ! ! +--6 ! ! +--3 +B-berhoffi ! ! ! ! ! +--4 +B-vinsonii ! ! ! ! +B-birtlesi ! +--1 ! ! +B-elizabet ! +-11 ! ! +B-grahamii ! +-10 ! +B--doshiae ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.47166 Average percent standard deviation = 5.11892 examined 646 trees Between And Length ------- --- ------ 5 7 0.00232 7 8 0.00055 8 9 0.00870 9 B--weissii 0.00558 9 B-spp-Deer 0.00762 8 B-clarridg 0.01712 7 B-bacillif 0.01425 5 2 0.00438 2 12 0.00085 12 B-henselae 0.00609 12 B-quintana 0.00911 2 4 0.00127 4 3 0.00106 3 6 0.00090 6 B-arupensi 0.00461 6 B-berhoffi 0.00539 3 B-vinsonii 0.00310 4 1 0.00057 1 B-birtlesi 0.00855 1 11 0.00094 11 B-elizabet 0.00941 11 10 0.00117 10 B-grahamii 0.00643 10 B--doshiae 0.00377 5 A-tumefaci 0.08716 Data set # 59: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-bacillif +--9 ! ! +B--weissii +--4 +--5 ! ! +B-spp-Deer ! ! ! +B-clarridg ! ! +B-henselae ! +-11 ! ! +B-quintana ! ! ! ! +B--doshiae --6--3 +--1 ! ! +-12 +B-birtlesi ! ! ! ! ! ! ! +B-grahamii ! +--2 ! ! +B-vinsonii ! ! +--8 ! ! ! ! +B-arupensi ! +--7 +-10 ! ! +B-berhoffi ! ! ! +B-elizabet ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.34887 Average percent standard deviation = 4.40244 examined 532 trees Between And Length ------- --- ------ 6 4 0.00047 4 9 0.00123 9 B-bacillif 0.01059 9 5 0.00928 5 B--weissii 0.00416 5 B-spp-Deer 0.00804 4 B-clarridg 0.01663 6 3 0.00697 3 11 0.00123 11 B-henselae 0.00685 11 B-quintana 0.01175 3 2 0.00108 2 12 0.00110 12 1 0.00016 1 B--doshiae 0.00433 1 B-birtlesi 0.00637 12 B-grahamii 0.00760 2 7 0.00077 7 8 0.00122 8 B-vinsonii 0.00480 8 10 0.00191 10 B-arupensi 0.00311 10 B-berhoffi 0.00459 7 B-elizabet 0.00916 6 A-tumefaci 0.08742 Data set # 60: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-elizabet +--5 +--4 +B-grahamii ! ! +--1 +B-henselae ! ! ! ! +B-birtlesi ! +--8 +--3 +B--doshiae ! ! ! ! +B-berhoffi ! ! +-11 +-10 +--2 +B-arupensi ! ! ! ! ! +B-vinsonii ! ! ! +B-quintana ! ! +B-bacillif ! +--9 ! ! ! +B--weissii --6--7 +-12 ! ! +B-spp-Deer ! ! ! +B-clarridg ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.47677 Average percent standard deviation = 5.14658 examined 638 trees Between And Length ------- --- ------ 6 10 0.00469 10 3 0.00183 3 1 0.00110 1 4 0.00032 4 5 0.00067 5 B-elizabet 0.00848 5 B-grahamii 0.00442 4 B-henselae 0.00781 1 8 0.00109 8 B-birtlesi 0.00784 8 B--doshiae 0.00406 3 2 0.00120 2 11 0.00184 11 B-berhoffi 0.00409 11 B-arupensi 0.00291 2 B-vinsonii 0.00403 10 B-quintana 0.01342 6 7 0.00109 7 9 0.00189 9 B-bacillif 0.01060 9 12 0.00805 12 B--weissii 0.00321 12 B-spp-Deer 0.00769 7 B-clarridg 0.01485 6 A-tumefaci 0.09992 Data set # 61: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg +--9 ! ! +B--weissii +--5 +-12 ! ! +B-spp-Deer ! ! ! +B-bacillif ! ! +B-vinsonii ! +--1 ! +-11 +B-arupensi ! ! ! ! ! +B-berhoffi ! ! ! +--2 +B-birtlesi ! ! ! +--7 ! ! ! ! +B--doshiae ! ! ! +--8 ! ! ! ! ! +B-grahamii --4--3 +--6 +-10 ! ! ! +B-elizabet ! ! ! ! ! +B-henselae ! ! ! +B-quintana ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.45641 Average percent standard deviation = 5.03547 examined 872 trees Between And Length ------- --- ------ 4 5 0.00161 5 9 0.00105 9 B-clarridg 0.01704 9 12 0.00639 12 B--weissii 0.00465 12 B-spp-Deer 0.00905 5 B-bacillif 0.01162 4 3 0.00414 3 2 0.00084 2 11 0.00199 11 1 0.00047 1 B-vinsonii 0.00368 1 B-arupensi 0.00222 11 B-berhoffi 0.00422 2 6 0.00240 6 8 0.00024 8 7 0.00039 7 B-birtlesi 0.00914 7 B--doshiae 0.00306 8 10 0.00176 10 B-grahamii 0.00807 10 B-elizabet 0.00913 6 B-henselae 0.00688 3 B-quintana 0.01482 4 A-tumefaci 0.09704 Data set # 62: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg +-10 ! ! +B-bacillif ! +--3 ! ! +B-spp-Deer ! +--2 ! +B--weissii ! ! +B-grahamii ! +--5 ! +--7 +B-elizabet ! ! ! ! +--8 +B-birtlesi ! ! ! ! +--9 +B--doshiae ! ! ! ! ! ! +B-arupensi --4--1 +-11 ! ! +B-berhoffi ! ! ! ! +B-vinsonii ! +-12 ! ! +B-quintana ! +--6 ! +B-henselae ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.51094 Average percent standard deviation = 5.32780 examined 562 trees Between And Length ------- --- ------ 4 10 0.00208 10 B-clarridg 0.01365 10 3 0.00094 3 B-bacillif 0.01096 3 2 0.00954 2 B-spp-Deer 0.00725 2 B--weissii 0.00395 4 1 0.00616 1 9 0.00028 9 8 0.00105 8 7 0.00048 7 5 0.00089 5 B-grahamii 0.00802 5 B-elizabet 0.00998 7 B-birtlesi 0.00744 8 B--doshiae 0.00382 9 11 0.00239 11 B-arupensi 0.00320 11 B-berhoffi 0.00500 1 12 0.00064 12 B-vinsonii 0.00495 12 6 0.00180 6 B-quintana 0.01027 6 B-henselae 0.00693 4 A-tumefaci 0.09071 Data set # 63: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-henselae ! ! +B--doshiae ! +--9 +--7 ! ! +B-elizabet ! ! +--4 +-12 ! ! ! ! +B-grahamii ! ! ! ! ! +--1 +B-birtlesi ! ! +--6 ! +B-arupensi ! ! ! +--3 ! ! +--8 +B-berhoffi ! ! ! ! ! +B-vinsonii ! ! ! +B-quintana ! ! +B-spp-Deer ! +-11 ! +--5 +B--weissii ! ! ! --2-10 +B-clarridg ! ! ! +B-bacillif ! +-----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.39498 Average percent standard deviation = 4.68436 examined 692 trees Between And Length ------- --- ------ 2 6 0.00545 6 7 0.00140 7 B-henselae 0.00883 7 1 0.00147 1 4 0.00069 4 9 0.00049 9 B--doshiae 0.00473 9 12 0.00054 12 B-elizabet 0.01222 12 B-grahamii 0.00708 4 B-birtlesi 0.00818 1 8 0.00068 8 3 0.00206 3 B-arupensi 0.00188 3 B-berhoffi 0.00332 8 B-vinsonii 0.00653 6 B-quintana 0.01069 2 10 0.00133 10 5 0.00145 5 11 0.00648 11 B-spp-Deer 0.00732 11 B--weissii 0.00588 5 B-clarridg 0.01987 10 B-bacillif 0.01257 2 A-tumefaci 0.09945 Data set # 64: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-bacillif ! +-11 +B--weissii ! ! +--4 ! +--3 +B-spp-Deer ! ! ! +B-clarridg ! ! +B-quintana ! ! ! ! +B-henselae --2--7 ! ! ! ! +B-grahamii ! ! ! +--5 ! +--8 ! +B-elizabet ! ! +--1 ! ! ! ! +B--doshiae ! ! ! +-10 ! +--6 +B-birtlesi ! ! ! ! +B-berhoffi ! ! +-12 ! +--9 +B-arupensi ! ! ! +B-vinsonii ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.56689 Average percent standard deviation = 5.61194 examined 598 trees Between And Length ------- --- ------ 2 11 0.00240 11 B-bacillif 0.01048 11 3 0.00058 3 4 0.00872 4 B--weissii 0.00486 4 B-spp-Deer 0.00664 3 B-clarridg 0.01865 2 7 0.00487 7 B-quintana 0.01272 7 8 0.00162 8 B-henselae 0.00721 8 6 0.00075 6 1 0.00063 1 5 0.00082 5 B-grahamii 0.00543 5 B-elizabet 0.00827 1 10 0.00081 10 B--doshiae 0.00392 10 B-birtlesi 0.00658 6 9 0.00085 9 12 0.00238 12 B-berhoffi 0.00478 12 B-arupensi 0.00392 9 B-vinsonii 0.00323 2 A-tumefaci 0.08870 Data set # 65: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg +-11 ! ! +B-bacillif ! +--1 ! ! +B-spp-Deer ! +--7 ! +B--weissii ! ! +B-quintana ! ! --3--6 +B-henselae ! ! ! ! ! ! +B-grahamii ! +--2 +--8 ! ! ! ! +B-birtlesi ! ! ! +-10 ! +--4 +B--doshiae ! ! ! ! +B-elizabet ! ! ! ! +--9 +B-berhoffi ! ! +-12 ! +--5 +B-arupensi ! ! ! +B-vinsonii ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.42815 Average percent standard deviation = 4.87711 examined 586 trees Between And Length ------- --- ------ 3 11 0.00257 11 B-clarridg 0.02137 11 1 0.00265 1 B-bacillif 0.01252 1 7 0.00817 7 B-spp-Deer 0.00872 7 B--weissii 0.00448 3 6 0.00468 6 B-quintana 0.01315 6 2 0.00134 2 B-henselae 0.00728 2 4