Penny algorithm for DNA, version 3.573c branch-and-bound to find all most parsimonious trees requires a total of 195.000 6 trees in all found +--------------------------------------A-tumefaci ! ! +--B-clarridg ! +--6 ! +--3 +--B-spp-Deer ! ! ! ! +--9 +-----B-bacillif ! ! ! ! +--------7 +--------B--weissii ! ! ! ! +--4 +-----------B--doshiae --1 ! ! ! ! ! +-----B-henselae ! ! +-------------11 ! +-12 ! +--B-quintana ! ! ! +-10 ! ! ! +--B-berhoffi ! +----13 ! ! ! ! +-----------------------B-vinsonii ! ! ! ! +--5 +--------------------------B-arupensi ! ! ! ! ! ! +--B-elizabet +--2 +-----------------------------8 ! +--B-grahamii ! +-----------------------------------B-birtlesi remember: (although rooted by outgroup) this is an unrooted tree! +--------------------------------------A-tumefaci ! ! +--B-clarridg ! +--6 ! +--3 +--B-spp-Deer ! ! ! ! +--9 +-----B-bacillif ! ! ! ! +-----7 +--------B--weissii ! ! ! ! +--4 +-----------B--doshiae --1 ! ! ! ! ! +--B-quintana ! +-11 +-------------10 ! ! ! +--B-berhoffi ! +-12 ! ! ! ! +--------------------B-henselae ! +----13 ! ! ! ! +-----------------------B-vinsonii ! ! ! ! +--5 +--------------------------B-arupensi ! ! ! ! ! ! +--B-elizabet +--2 +-----------------------------8 ! +--B-grahamii ! +-----------------------------------B-birtlesi remember: (although rooted by outgroup) this is an unrooted tree! +--------------------------------------A-tumefaci ! ! +--B-clarridg ! +--6 ! +--3 +--B-spp-Deer ! ! ! ! +--9 +-----B-bacillif ! ! ! ! +--------7 +--------B--weissii ! ! ! ! +--4 +-----------B--doshiae --1 ! ! ! ! ! +-----B-quintana ! ! +-------------10 ! +-12 ! +--B-henselae ! ! ! +-11 ! ! ! +--B-berhoffi ! +----13 ! ! ! ! +-----------------------B-vinsonii ! ! ! ! +--5 +--------------------------B-arupensi ! ! ! ! ! ! +--B-elizabet +--2 +-----------------------------8 ! +--B-grahamii ! +-----------------------------------B-birtlesi remember: (although rooted by outgroup) this is an unrooted tree! +--------------------------------------A-tumefaci ! ! +--B-clarridg ! +--6 ! +--3 +--B-spp-Deer ! ! ! ! +--9 +-----B-bacillif ! ! ! ! +--7 +--------B--weissii ! ! ! ! +----11 +-----------B--doshiae --1 ! ! ! +--4 +--------------B-henselae ! ! ! ! ! ! +--B-quintana ! +-12 +----------------10 ! ! ! +--B-berhoffi ! +----13 ! ! ! ! +-----------------------B-vinsonii ! ! ! ! +--5 +--------------------------B-arupensi ! ! ! ! ! ! +--B-elizabet +--2 +-----------------------------8 ! +--B-grahamii ! +-----------------------------------B-birtlesi remember: (although rooted by outgroup) this is an unrooted tree! +--------------------------------------A-tumefaci ! ! +--B-clarridg ! +--6 ! +--9 +--B-spp-Deer ! ! ! ! +--3 +-----B--weissii ! ! ! ! +--------7 +--------B-bacillif ! ! ! ! +--4 +-----------B--doshiae --1 ! ! ! ! ! +-----B-henselae ! ! +-------------11 ! +-12 ! +--B-quintana ! ! ! +-10 ! ! ! +--B-berhoffi ! +----13 ! ! ! ! +-----------------------B-vinsonii ! ! ! ! +--5 +--------------------------B-arupensi ! ! ! ! ! ! +--B-elizabet +--2 +-----------------------------8 ! +--B-grahamii ! +-----------------------------------B-birtlesi remember: (although rooted by outgroup) this is an unrooted tree! +--------------------------------------A-tumefaci ! ! +--B-clarridg ! +--6 ! +--9 +--B-spp-Deer ! ! ! ! +--3 +-----B--weissii ! ! ! ! +--------7 +--------B-bacillif ! ! ! ! +--4 +-----------B--doshiae --1 ! ! ! ! ! +-----B-quintana ! ! +-------------10 ! +-12 ! +--B-henselae ! ! ! +-11 ! ! ! +--B-berhoffi ! +----13 ! ! ! ! +-----------------------B-vinsonii ! ! ! ! +--5 +--------------------------B-arupensi ! ! ! ! ! ! +--B-elizabet +--2 +-----------------------------8 ! +--B-grahamii ! +-----------------------------------B-birtlesi remember: (although rooted by outgroup) this is an unrooted tree!