14 Populations Neighbor-Joining/UPGMA method version 3.573c Data set # 1: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +B--weissii ! +--1 ! +--3 +B-spp-Deer ! ! ! ! +--5 +-B-bacillif ! ! ! ! ! +---B-clarridg ! ! ! +-10 +-B-berhoffi ! ! ! +--9 ! ! ! ! ! +B-vinsonii ! ! ! +-11 +--7 ! ! ! ! ! +B-arupensi ! ! +-12 ! --6--8 ! +B-henselae ! ! ! ! ! +B-quintana ! ! ! ! +B-elizabet ! ! +--2 ! +--4 +B-grahamii ! ! ! +--B-birtlesi ! +-----------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 6 B--doshiae 0.00481 6 8 0.01510 8 10 0.00409 10 5 0.01885 5 3 0.01231 3 1 0.01078 1 B--weissii 0.00909 1 B-spp-Deer 0.02531 3 B-bacillif 0.04042 5 B-clarridg 0.06394 10 12 0.00329 12 11 0.00149 11 9 0.00406 9 B-berhoffi 0.03360 9 7 0.00480 7 B-vinsonii 0.00619 7 B-arupensi 0.00741 11 B-henselae 0.00649 12 B-quintana 0.00962 8 4 0.01984 4 2 0.01220 2 B-elizabet 0.00429 2 B-grahamii 0.00581 4 B-birtlesi 0.04595 6 A-tumefaci 0.30719 Data set # 2: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +B-berhoffi ! +--7 ! +--8 +B-henselae ! ! ! ! ! +B-quintana ! +-10 ! ! ! +B-vinsonii ! ! ! ! ! ! +-11 +B-elizabet ! ! ! +--5 ! ! ! ! ! +-B-birtlesi --2--9 +-12 +--4 ! ! ! +B-grahamii ! ! ! ! ! +B-arupensi ! ! ! ! +-B-bacillif ! ! ! ! +--6 +B-spp-Deer ! ! +--1 ! +--3 +--B-clarridg ! ! ! +B--weissii ! +----------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 B--doshiae 0.00056 2 9 0.02106 9 10 0.00415 10 8 0.00744 8 7 0.00129 7 B-berhoffi 0.02236 7 B-henselae 0.00574 8 B-quintana 0.00561 10 11 0.00126 11 B-vinsonii 0.00553 11 12 0.00095 12 5 0.00910 5 B-elizabet 0.01081 5 4 0.00314 4 B-birtlesi 0.02288 4 B-grahamii 0.00512 12 B-arupensi 0.00122 9 6 0.00414 6 B-bacillif 0.03419 6 3 0.01091 3 1 0.01034 1 B-spp-Deer 0.01482 1 B-clarridg 0.04598 3 B--weissii 0.00401 2 A-tumefaci 0.28394 Data set # 3: Neighbor-joining method Negative branch lengths allowed +---B-birtlesi ! ! +--B-bacillif ! ! ! ! +--B-clarridg ! +-11 +--3 ! ! ! +--5 +B-spp-Deer ! ! ! ! ! ! ! +-12 +B--weissii ! ! ! ! +-10 +-B--doshiae ! ! ! ! ! ! +B-quintana ! ! ! +--7 ! ! ! ! ! +B-henselae ! ! ! ! +--6 --1--4 +--9 +-B-berhoffi ! ! ! ! ! ! +B-vinsonii ! ! +--8 ! ! +B-arupensi ! ! ! ! +B-elizabet ! +--2 ! +B-grahamii ! +-------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 1 B-birtlesi 0.06337 1 4 0.02561 4 10 0.01568 10 11 0.00724 11 B-bacillif 0.05906 11 12 0.00564 12 5 0.01034 5 3 0.01490 3 B-clarridg 0.05298 3 B-spp-Deer 0.00542 5 B--weissii 0.00970 12 B--doshiae 0.02956 10 9 0.00404 9 7 0.00716 7 B-quintana 0.01041 7 6 0.00484 6 B-henselae 0.00446 6 B-berhoffi 0.02244 9 8 0.00583 8 B-vinsonii 0.01137 8 B-arupensi 0.01203 4 2 0.02617 2 B-elizabet 0.02025 2 B-grahamii 0.01675 1 A-tumefaci 0.23573 Data set # 4: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +-B-clarridg ! +--2 ! +--4 +B-spp-Deer ! ! ! ! +--5 +B--weissii ! ! ! ! ! +-B-bacillif ! +--8 ! ! ! +B-quintana ! ! ! +-12 ! ! ! ! +B-henselae ! ! +-11 ! ! ! +B-vinsonii --3--7 +-10 ! ! ! +-B-berhoffi ! ! +--9 ! ! +B-arupensi ! ! ! ! +B-elizabet ! ! +--1 ! +--6 +B-grahamii ! ! ! +-B-birtlesi ! +----------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 B--doshiae 0.00839 3 7 0.02295 7 8 0.00475 8 5 0.02324 5 4 0.00776 4 2 0.00801 2 B-clarridg 0.02994 2 B-spp-Deer 0.01426 4 B--weissii 0.01249 5 B-bacillif 0.03732 8 11 0.00753 11 12 0.00232 12 B-quintana 0.01345 12 B-henselae 0.01035 11 10 0.00508 10 B-vinsonii 0.00859 10 9 0.00506 9 B-berhoffi 0.03215 9 B-arupensi 0.00505 7 6 0.01920 6 1 0.01266 1 B-elizabet 0.01535 1 B-grahamii 0.00825 6 B-birtlesi 0.04764 3 A-tumefaci 0.27871 Data set # 5: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +B-arupensi ! +--7 ! +--8 +B-vinsonii ! ! ! ! +-11 +-B-berhoffi ! ! ! ! ! ! +B-quintana ! ! +-12 ! +-10 +B-henselae ! ! ! ! ! ! +B--weissii ! ! ! ! ! ! +--5 +-B-clarridg --6--9 ! +--1 ! ! +--2 +B-spp-Deer ! ! ! ! ! +-B-bacillif ! ! ! ! +--B-birtlesi ! +--4 ! ! +B-grahamii ! +--3 ! +B-elizabet ! +--------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 6 B--doshiae 0.01219 6 9 0.01285 9 10 0.00295 10 11 0.00248 11 8 0.00643 8 7 0.00460 7 B-arupensi 0.00947 7 B-vinsonii 0.01073 8 B-berhoffi 0.03355 11 12 0.00131 12 B-quintana 0.00321 12 B-henselae 0.00359 10 5 0.02078 5 B--weissii 0.01158 5 2 0.01214 2 1 0.01183 1 B-clarridg 0.03290 1 B-spp-Deer 0.00500 2 B-bacillif 0.03072 9 4 0.02482 4 B-birtlesi 0.05008 4 3 0.00702 3 B-grahamii 0.01083 3 B-elizabet 0.01617 6 A-tumefaci 0.25401 Data set # 6: Neighbor-joining method Negative branch lengths allowed +B-henselae ! ! +B-quintana ! +-10 +--6 ! ! +B-vinsonii ! ! ! +-11 ! ! ! ! +B-arupensi ! ! ! +-12 ! ! ! +-B-berhoffi ! +--9 ! ! +--B-clarridg ! ! +--4 ! ! +--7 +B-spp-Deer ! ! ! ! ! ! ! +B--weissii ! +--8 ! ! +-B-bacillif ! ! ! ! +--5 +-B-elizabet ! ! +--2 ! +--3 +B-grahamii ! ! ! +--B-birtlesi ! --1B--doshiae ! +-----------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 1 6 0.02364 6 B-henselae 0.01341 6 9 0.00901 9 10 0.00281 10 B-quintana 0.02053 10 11 0.00207 11 B-vinsonii 0.00229 11 12 0.00096 12 B-arupensi 0.00771 12 B-berhoffi 0.02649 9 8 0.00342 8 7 0.00448 7 4 0.00837 4 B-clarridg 0.05044 4 B-spp-Deer 0.01226 7 B--weissii 0.00908 8 5 0.01013 5 B-bacillif 0.03490 5 3 0.01832 3 2 0.00538 2 B-elizabet 0.02281 2 B-grahamii 0.01479 3 B-birtlesi 0.05552 1 B--doshiae 0.00673 1 A-tumefaci 0.29568 Data set # 7: Neighbor-joining method Negative branch lengths allowed +--B-clarridg ! +--5 +B--weissii ! ! +--3 ! +--4 +B-spp-Deer ! ! ! +-B-bacillif ! ! +-B-berhoffi +-12 +--8 ! ! ! ! +B-arupensi ! ! ! +--6 ! ! +-10 +B-vinsonii ! ! ! ! ! ! ! ! +B-grahamii +--7 ! ! ! +--2 ! ! +-11 +--9 +B-elizabet ! ! ! ! ! ! ! +B-quintana ! ! ! ! ! +B-henselae ! ! ! +B--doshiae ! --1-B-birtlesi ! +--------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 1 7 0.02381 7 12 0.00406 12 5 0.01646 5 B-clarridg 0.05758 5 4 0.00632 4 3 0.00492 3 B--weissii 0.00188 3 B-spp-Deer 0.01152 4 B-bacillif 0.02903 12 11 0.00287 11 10 0.00395 10 8 0.00555 8 B-berhoffi 0.01881 8 6 0.00494 6 B-arupensi 0.00752 6 B-vinsonii 0.00928 10 9 0.00420 9 2 0.01949 2 B-grahamii 0.00489 2 B-elizabet 0.00841 9 B-quintana 0.00421 11 B-henselae 0.01193 7 B--doshiae 0.01749 1 B-birtlesi 0.03365 1 A-tumefaci 0.24475 Data set # 8: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +-B-bacillif ! ! ! +--4 +B-clarridg ! ! ! +--1 ! ! +--2 +B-spp-Deer ! ! ! ! ! +B--weissii ! +-12 ! ! ! +B-grahamii ! ! ! +--5 ! ! ! +--8 +B-elizabet ! ! ! ! ! ! ! ! ! +B-arupensi ! ! +-11 --3--7 ! +B-henselae ! ! ! +--6 ! ! ! ! +-B-berhoffi ! ! +-10 ! ! ! +B-vinsonii ! ! +--9 ! ! +B-quintana ! ! ! +-B-birtlesi ! +---------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 B--doshiae 0.00395 3 7 0.02103 7 12 0.00551 12 4 0.02305 4 B-bacillif 0.03769 4 2 0.01133 2 1 0.00774 1 B-clarridg 0.01799 1 B-spp-Deer 0.00941 2 B--weissii 0.00956 12 11 0.00150 11 8 0.00599 8 5 0.00934 5 B-grahamii 0.00832 5 B-elizabet 0.00508 8 B-arupensi 0.00091 11 10 0.00488 10 6 0.00786 6 B-henselae 0.00097 6 B-berhoffi 0.02303 10 9 0.00166 9 B-vinsonii 0.01135 9 B-quintana 0.00905 7 B-birtlesi 0.03317 3 A-tumefaci 0.26615 Data set # 9: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +B-henselae ! ! ! +-12 +B-arupensi ! ! ! +--4 ! ! +--7 +B-vinsonii +--9 ! ! ! ! +-11 +B-berhoffi ! ! ! ! ! ! ! ! +B-grahamii ! ! ! ! +--1 ! ! ! +--8 +B-elizabet ! ! ! ! ! +-10 +B-quintana ! ! ! ! +-B-clarridg ! ! +--3 ! ! +--5 +B-spp-Deer ! ! ! ! ! +--6 +B--weissii ! ! ! +B-bacillif ! --2-B-birtlesi ! +--------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 9 0.01982 9 B--doshiae 0.00828 9 10 0.00332 10 11 0.00182 11 12 0.00182 12 B-henselae 0.00581 12 7 0.00824 7 4 0.00688 4 B-arupensi 0.00214 4 B-vinsonii 0.01156 7 B-berhoffi 0.02097 11 8 0.00588 8 1 0.01957 1 B-grahamii 0.00505 1 B-elizabet 0.00515 8 B-quintana 0.00678 10 6 0.01065 6 5 0.00366 5 3 0.00686 3 B-clarridg 0.03508 3 B-spp-Deer 0.00732 5 B--weissii 0.00009 6 B-bacillif 0.02449 2 B-birtlesi 0.03309 2 A-tumefaci 0.25371 Data set # 10: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +B-arupensi ! +--7 ! ! +B-vinsonii ! ! ! ! +-B-clarridg ! ! +--2 ! ! ! ! +B-spp-Deer ! ! +--3 +--1 --4-12 ! ! +B--weissii ! ! ! ! ! ! +-10 +-B-bacillif ! ! ! ! ! ! ! ! +B-henselae ! ! ! ! +--8 ! ! ! +--9 +B-quintana ! +-11 ! ! ! +B-berhoffi ! ! ! ! +B-grahamii ! ! +--5 ! +--6 +B-elizabet ! ! ! +--B-birtlesi ! +--------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 4 B--doshiae 0.00903 4 12 0.02261 12 7 0.00524 7 B-arupensi 0.00770 7 B-vinsonii 0.00600 12 11 0.00046 11 10 0.00437 10 3 0.02287 3 2 0.00990 2 B-clarridg 0.03902 2 1 0.01083 1 B-spp-Deer 0.00178 1 B--weissii 0.00162 3 B-bacillif 0.02870 10 9 0.00422 9 8 0.00181 8 B-henselae 0.01203 8 B-quintana 0.00897 9 B-berhoffi 0.02644 11 6 0.01247 6 5 0.00726 5 B-grahamii 0.00371 5 B-elizabet 0.00659 6 B-birtlesi 0.04319 4 A-tumefaci 0.24677 Data set # 11: Neighbor-joining method Negative branch lengths allowed +B-arupensi ! ! +B-berhoffi ! +--9 ! ! +B-henselae +--8 +-11 ! ! ! ! +B-quintana ! ! ! +-12 ! ! ! +B-vinsonii ! ! ! ! +-10 +B--weissii ! ! +--2 ! ! +--3 +B-spp-Deer +--6 ! ! ! ! ! ! +--4 +-B-bacillif ! ! ! ! ! ! ! +--7 +--B-clarridg ! ! ! ! ! +-B--doshiae ! ! ! ! +B-elizabet ! +--1 ! +B-grahamii ! --5-B-birtlesi ! +---------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 5 6 0.00836 6 8 0.00728 8 B-arupensi 0.00300 8 10 0.00356 10 11 0.00297 11 9 0.00322 9 B-berhoffi 0.02896 9 B-henselae 0.00634 11 12 0.00213 12 B-quintana 0.01046 12 B-vinsonii 0.01044 10 7 0.00538 7 4 0.02604 4 3 0.00491 3 2 0.00263 2 B--weissii 0.00402 2 B-spp-Deer 0.00988 3 B-bacillif 0.02182 4 B-clarridg 0.05579 7 B--doshiae 0.01810 6 1 0.02009 1 B-elizabet 0.00762 1 B-grahamii 0.00618 5 B-birtlesi 0.03467 5 A-tumefaci 0.26203 Data set # 12: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +B-vinsonii ! +--8 ! ! +B-arupensi ! +--9 ! ! ! +B-henselae ! ! ! +--6 ! ! +--7 +B-berhoffi ! +-11 ! ! ! ! +B-quintana ! ! ! ! ! ! +B-grahamii ! ! ! +--5 ! ! +-10 +B-elizabet --3-12 ! ! ! +--B-birtlesi ! ! ! ! +B-spp-Deer ! ! +--1 ! ! +--2 +--B-clarridg ! ! ! ! ! +--4 +B--weissii ! ! ! +---B-bacillif ! +-----------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 B--doshiae 0.01548 3 12 0.02315 12 11 0.00090 11 9 0.00904 9 8 0.00180 8 B-vinsonii 0.00756 8 B-arupensi -0.00076 9 7 0.00515 7 6 0.00403 6 B-henselae 0.00320 6 B-berhoffi 0.02130 7 B-quintana 0.00447 11 10 0.00458 10 5 0.01411 5 B-grahamii 0.00229 5 B-elizabet 0.01831 10 B-birtlesi 0.06219 12 4 0.02095 4 2 0.01271 2 1 0.00680 1 B-spp-Deer 0.00737 1 B-clarridg 0.05693 2 B--weissii 0.01470 4 B-bacillif 0.07759 3 A-tumefaci 0.29422 Data set # 13: Neighbor-joining method Negative branch lengths allowed +B-birtlesi +-12 ! ! +B-arupensi ! +-10 ! +B-vinsonii ! ! +B-spp-Deer ! +--3 ! +--5 +B--weissii +-11 ! ! ! ! +--6 +--B-clarridg ! ! ! ! ! ! ! ! +B-berhoffi ! ! +--7 +--4 ! ! ! ! +B-henselae ! ! +--8 ! ! ! ! ! +B-quintana ! ! ! ! ! +--9 +-B-bacillif ! ! ! ! +B-grahamii ! +--1 ! +B-elizabet ! --2B--doshiae ! +----------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 11 0.00811 11 12 0.00113 12 B-birtlesi 0.02976 12 10 0.00214 10 B-arupensi 0.00580 10 B-vinsonii 0.00440 11 9 0.00377 9 8 0.00087 8 7 0.00713 7 6 0.00108 6 5 0.00372 5 3 0.00243 3 B-spp-Deer 0.00605 3 B--weissii 0.00765 5 B-clarridg 0.03647 6 4 0.00441 4 B-berhoffi 0.01775 4 B-henselae 0.00665 7 B-quintana 0.00869 8 B-bacillif 0.03007 9 1 0.01922 1 B-grahamii 0.00574 1 B-elizabet 0.01146 2 B--doshiae 0.01190 2 A-tumefaci 0.27930 Data set # 14: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +B-clarridg ! +--1 ! +--2 +B-spp-Deer ! ! ! ! +--3 +B--weissii ! ! ! ! ! +-B-bacillif ! ! ! ! +B-grahamii ! ! +--5 --4--7 +--6 +B-elizabet ! ! ! ! ! ! +--9 +-B-birtlesi ! ! ! ! ! ! ! ! +B-arupensi ! ! ! +--8 ! +-10 +B-vinsonii ! ! ! ! +B-quintana ! ! +-12 ! +-11 +B-henselae ! ! ! +-B-berhoffi ! +---------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 4 B--doshiae 0.01846 4 7 0.01242 7 3 0.02224 3 2 0.01287 2 1 0.01119 1 B-clarridg 0.03278 1 B-spp-Deer 0.01292 2 B--weissii 0.00681 3 B-bacillif 0.03201 7 10 0.00750 10 9 0.00488 9 6 0.00859 6 5 0.00977 5 B-grahamii 0.00430 5 B-elizabet 0.00940 6 B-birtlesi 0.03363 9 8 0.00482 8 B-arupensi 0.00940 8 B-vinsonii 0.01130 10 11 0.00507 11 12 0.00278 12 B-quintana 0.01556 12 B-henselae 0.01254 11 B-berhoffi 0.03287 4 A-tumefaci 0.26674 Data set # 15: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +B-grahamii ! +--2 ! +--4 +B-elizabet ! ! ! ! ! +-B-birtlesi ! ! ! +--8 +-B-clarridg ! ! ! +--1 ! ! ! +--5 +B-spp-Deer ! ! ! ! ! ! ! +--6 +B--weissii ! +-10 ! ! ! ! +B-bacillif ! ! ! ! ! ! +-B-berhoffi ! ! ! +--7 --3--9 ! ! +B-henselae ! ! +-11 ! ! ! +B-vinsonii ! ! +-12 ! ! +B-quintana ! ! ! +B-arupensi ! +-----------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 B--doshiae 0.00657 3 9 0.01357 9 10 0.00201 10 8 0.00216 8 4 0.01092 4 2 0.00604 2 B-grahamii 0.01048 2 B-elizabet 0.00992 4 B-birtlesi 0.04006 8 6 0.01182 6 5 0.00229 5 1 0.01319 1 B-clarridg 0.03255 1 B-spp-Deer 0.00855 5 B--weissii 0.01501 6 B-bacillif 0.02373 10 11 0.00207 11 7 0.00649 7 B-berhoffi 0.02364 7 B-henselae 0.01116 11 12 0.00121 12 B-vinsonii 0.00837 12 B-quintana 0.00853 9 B-arupensi 0.00233 3 A-tumefaci 0.19843 Data set # 16: Neighbor-joining method Negative branch lengths allowed +B-henselae ! ! +B-vinsonii ! +-10 ! ! ! +-B-berhoffi ! ! +--9 ! +-12 +B-quintana ! ! ! ! ! ! +B-elizabet ! ! ! +--1 ! +-11 +--3 +B-grahamii ! ! ! ! ! ! ! +-B-birtlesi ! ! ! ! ! +B-arupensi --7--8 ! ! +B--weissii ! ! +--2 ! ! +--5 +B-spp-Deer ! ! ! ! ! +--6 +B-bacillif ! ! ! ! +B--doshiae ! +--4 ! +-B-clarridg ! +----------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 7 B-henselae 0.00229 7 8 0.00763 8 11 0.00265 11 12 0.00085 12 10 0.00160 10 B-vinsonii 0.00476 10 9 0.00184 9 B-berhoffi 0.03535 9 B-quintana 0.01355 12 3 0.01568 3 1 0.00666 1 B-elizabet 0.00402 1 B-grahamii 0.00618 3 B-birtlesi 0.03224 11 B-arupensi 0.00792 8 6 0.01471 6 5 0.00420 5 2 0.00906 2 B--weissii -0.00045 2 B-spp-Deer 0.01405 5 B-bacillif 0.02564 6 4 0.00742 4 B--doshiae 0.01276 4 B-clarridg 0.04374 7 A-tumefaci 0.28001 Data set # 17: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +B-arupensi ! ! ! ! +B-vinsonii --5--7 ! ! ! ! +B-berhoffi ! ! ! +--6 ! +-12 +--8 +B-henselae ! ! ! ! ! ! ! +B-quintana ! ! ! ! ! ! +B--weissii ! +-11 +--1 ! ! +--2 +B-spp-Deer ! ! ! ! ! ! +--3 +--B-clarridg ! ! ! ! ! +-10 +-B-bacillif ! ! ! ! +-B-birtlesi ! +--9 ! ! +B-grahamii ! +--4 ! +B-elizabet ! +------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 5 B--doshiae 0.00945 5 7 0.00784 7 B-arupensi 0.00831 7 12 0.00587 12 B-vinsonii 0.02235 12 11 0.00253 11 8 0.00555 8 6 0.00670 6 B-berhoffi 0.01673 6 B-henselae 0.00707 8 B-quintana 0.01390 11 10 0.00280 10 3 0.01507 3 2 0.00915 2 1 0.00422 1 B--weissii 0.00135 1 B-spp-Deer 0.00875 2 B-clarridg 0.04873 3 B-bacillif 0.03875 10 9 0.00280 9 B-birtlesi 0.02071 9 4 0.01014 4 B-grahamii 0.00062 4 B-elizabet 0.00608 5 A-tumefaci 0.22035 Data set # 18: Neighbor-joining method Negative branch lengths allowed +-B-birtlesi ! ! +B-vinsonii ! ! ! ! +B--doshiae ! ! +-12 ! +--7 ! ! +B-elizabet ! ! ! ! +--5 ! ! ! ! +B-grahamii ! ! ! ! ! ! ! ! +B-spp-Deer ! ! +-11 +--1 ! ! ! +--2 +-B-clarridg ! ! ! ! ! ! ! ! +--3 +B--weissii --4--6 ! ! ! ! ! ! ! +B-bacillif ! ! +-10 ! ! ! +B-berhoffi ! ! ! +--8 ! ! +--9 +B-henselae ! ! ! ! ! +B-quintana ! ! ! +B-arupensi ! +---------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 4 B-birtlesi 0.02624 4 6 0.00979 6 7 0.00060 7 B-vinsonii 0.00488 7 11 0.01090 11 12 0.00156 12 B--doshiae 0.01423 12 5 0.00947 5 B-elizabet 0.00228 5 B-grahamii 0.00442 11 10 0.00235 10 3 0.03487 3 2 0.00080 2 1 0.00344 1 B-spp-Deer 0.00521 1 B-clarridg 0.03249 2 B--weissii 0.00686 3 B-bacillif 0.02325 10 9 0.00434 9 8 0.00222 8 B-berhoffi 0.01384 8 B-henselae 0.00306 9 B-quintana 0.00958 6 B-arupensi 0.00221 4 A-tumefaci 0.27116 Data set # 19: Neighbor-joining method Negative branch lengths allowed +B-arupensi ! ! +--B-clarridg ! +--4 ! ! ! +B-spp-Deer ! +--5 +--3 +--8 ! ! +B--weissii ! ! ! ! ! ! +-11 +--B-bacillif ! ! ! ! ! ! ! ! +--B-berhoffi ! ! ! +-12 ! +--9 ! +B-quintana +--7 ! +-10 ! ! ! +B-henselae ! ! ! ! ! +B-vinsonii ! ! ! ! +B-grahamii ! ! +--1 ! +--6 +B-elizabet ! ! ! +-B-birtlesi ! --2B--doshiae ! +------------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 7 0.02314 7 8 0.00425 8 B-arupensi 0.01485 8 9 0.00421 9 11 0.00617 11 5 0.01581 5 4 0.00556 4 B-clarridg 0.05238 4 3 0.00977 3 B-spp-Deer 0.00916 3 B--weissii 0.00834 5 B-bacillif 0.04126 11 12 0.00080 12 B-berhoffi 0.03672 12 10 0.00253 10 B-quintana 0.00578 10 B-henselae 0.00472 9 B-vinsonii 0.00904 7 6 0.00728 6 1 0.01492 1 B-grahamii 0.00534 1 B-elizabet 0.00846 6 B-birtlesi 0.03953 2 B--doshiae 0.00807 2 A-tumefaci 0.31983 Data set # 20: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +B-elizabet ! +--5 ! +--6 +B-grahamii ! ! ! ! ! +-B-birtlesi ! +--8 ! ! ! +B-vinsonii ! ! ! +--9 ! ! ! ! +B-arupensi ! ! +-10 ! ! ! +B-quintana ! ! +-11 --4--7 ! +B-henselae ! ! +-12 ! ! +--B-berhoffi ! ! ! ! +B--weissii ! ! +--2 ! ! ! ! +B-spp-Deer ! +--3 +--1 ! ! +---B-clarridg ! ! ! +B-bacillif ! +----------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 4 B--doshiae 0.00567 4 7 0.02115 7 8 0.00872 8 6 0.01726 6 5 0.00937 5 B-elizabet 0.00370 5 B-grahamii 0.00640 6 B-birtlesi 0.03968 8 10 0.00287 10 9 0.00178 9 B-vinsonii 0.01074 9 B-arupensi 0.00276 10 11 0.00185 11 B-quintana 0.00713 11 12 0.00127 12 B-henselae 0.00494 12 B-berhoffi 0.04046 7 3 0.02311 3 2 0.00736 2 B--weissii 0.00492 2 1 0.00543 1 B-spp-Deer 0.01511 1 B-clarridg 0.06279 3 B-bacillif 0.01007 4 A-tumefaci 0.28333 Data set # 21: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +B-arupensi ! ! ! ! +B-vinsonii ! ! ! ! ! +-12 +B-berhoffi --2--7 ! ! +-10 ! ! ! +-11 +B-henselae ! ! ! ! ! ! ! +B-quintana ! ! ! ! +--9 +B--weissii ! ! +--3 ! ! ! ! +B-spp-Deer ! ! +--4 +--1 ! ! ! ! +-B-clarridg ! ! ! ! ! +--8 +--B-bacillif ! ! ! ! +-B-birtlesi ! +--6 ! ! +B-grahamii ! +--5 ! +B-elizabet ! +----------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 B--doshiae 0.00333 2 7 0.02401 7 B-arupensi 0.00779 7 9 0.00793 9 12 0.00457 12 B-vinsonii 0.00740 12 11 0.00280 11 10 0.00368 10 B-berhoffi 0.01713 10 B-henselae 0.00327 11 B-quintana 0.00997 9 8 0.00560 8 4 0.01646 4 3 0.01248 3 B--weissii 0.00734 3 1 0.01381 1 B-spp-Deer 0.01214 1 B-clarridg 0.03296 4 B-bacillif 0.03864 8 6 0.01372 6 B-birtlesi 0.03902 6 5 0.00403 5 B-grahamii 0.00653 5 B-elizabet 0.01727 2 A-tumefaci 0.28637 Data set # 22: Neighbor-joining method Negative branch lengths allowed +B-grahamii +--2 ! +B-elizabet +-12 ! ! +B-arupensi ! ! +--9 ! +-10 +B-vinsonii ! ! ! +-B-birtlesi +-11 ! ! +-B-berhoffi ! ! +--7 ! ! ! ! +B-quintana ! ! ! +--6 ! ! ! +B-henselae ! +--8 ! ! +--B-clarridg ! ! +--4 ! ! ! ! +B-spp-Deer ! +--5 +--3 ! ! +B--weissii ! ! ! +-B-bacillif ! --1B--doshiae ! +------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 1 11 0.03420 11 12 0.00183 12 2 0.02297 2 B-grahamii 0.00501 2 B-elizabet 0.00529 12 10 0.00406 10 9 0.00597 9 B-arupensi 0.00136 9 B-vinsonii 0.01234 10 B-birtlesi 0.03153 11 8 0.00941 8 7 0.00538 7 B-berhoffi 0.03157 7 6 0.00203 6 B-quintana 0.00355 6 B-henselae 0.00335 8 5 0.01650 5 4 0.01305 4 B-clarridg 0.04273 4 3 0.00737 3 B-spp-Deer 0.00684 3 B--weissii 0.00356 5 B-bacillif 0.03825 1 B--doshiae 0.00656 1 A-tumefaci 0.22464 Data set # 23: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +B-elizabet ! +--5 ! +--8 +B-grahamii ! ! ! ! ! +---B-birtlesi ! +--9 ! ! ! +B-vinsonii ! ! ! +--7 ! ! ! ! +B-arupensi ! ! +-10 ! ! ! +B-henselae --3--6 ! +-11 ! ! +-12 +B-quintana ! ! ! ! ! +B-berhoffi ! ! ! ! +-B-bacillif ! ! ! ! +--4 +B-spp-Deer ! ! +--1 ! +--2 +B--weissii ! ! ! +-B-clarridg ! +----------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 B--doshiae 0.01520 3 6 0.02562 6 9 0.00889 9 8 0.00427 8 5 0.01638 5 B-elizabet 0.00129 5 B-grahamii 0.00201 8 B-birtlesi 0.06262 9 10 0.00278 10 7 0.00627 7 B-vinsonii 0.02225 7 B-arupensi 0.02225 10 12 0.00454 12 11 0.00312 11 B-henselae 0.01090 11 B-quintana 0.00950 12 B-berhoffi 0.02458 6 4 0.01751 4 B-bacillif 0.03370 4 2 0.01880 2 1 0.01788 1 B-spp-Deer 0.00745 1 B--weissii 0.00265 2 B-clarridg 0.04552 3 A-tumefaci 0.28680 Data set # 24: Neighbor-joining method Negative branch lengths allowed +B-elizabet +--2 ! +-B-bacillif +--5 ! ! +B-grahamii ! +--1 ! +--B-birtlesi ! +--8 +B-arupensi ! ! +--4 ! ! ! +B-vinsonii ! ! ! ! ! ! +B--weissii ! ! ! +--7 ! +--9 ! ! +B-spp-Deer ! ! ! +--6 ! ! +-11 +-B-clarridg ! ! ! ! ! ! ! ! +B-henselae ! +-12 +-10 ! ! +-B-berhoffi ! ! ! +B-quintana ! --3B--doshiae ! +----------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 8 0.01288 8 5 0.00595 5 2 0.00886 2 B-elizabet 0.01225 2 B-bacillif 0.03985 5 1 0.01524 1 B-grahamii 0.00747 1 B-birtlesi 0.04843 8 9 0.00462 9 4 0.00829 4 B-arupensi 0.00169 4 B-vinsonii 0.01191 9 12 0.01178 12 11 0.00027 11 7 0.01061 7 B--weissii 0.01255 7 6 0.00495 6 B-spp-Deer 0.01189 6 B-clarridg 0.04031 11 10 0.00554 10 B-henselae 0.01315 10 B-berhoffi 0.03285 12 B-quintana 0.00791 3 B--doshiae 0.00502 3 A-tumefaci 0.29058 Data set # 25: Neighbor-joining method Negative branch lengths allowed +--B-birtlesi ! ! +B-quintana ! +-10 ! ! +B-henselae ! ! ! ! +B-grahamii ! +-11 +--1 ! ! ! +--6 +B-elizabet ! ! ! ! ! ! ! ! +--7 +B-arupensi ! ! ! ! ! ! ! +-12 +B-berhoffi ! ! ! --5--9 +B-vinsonii ! ! ! ! +B-spp-Deer ! ! +--2 ! ! +--3 +B-bacillif ! ! ! ! ! ! +--4 +B--weissii ! ! ! ! ! +--8 +--B-clarridg ! ! ! +B--doshiae ! +----------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 5 B-birtlesi 0.04347 5 9 0.01304 9 11 0.00300 11 10 0.00196 10 B-quintana 0.00731 10 B-henselae 0.00269 11 12 0.00146 12 7 0.00383 7 6 0.00381 6 1 0.02528 1 B-grahamii 0.00706 1 B-elizabet 0.00964 6 B-arupensi 0.00707 7 B-berhoffi 0.02009 12 B-vinsonii 0.00789 9 8 0.00214 8 4 0.01906 4 3 0.00352 3 2 0.00522 2 B-spp-Deer 0.00567 2 B-bacillif 0.01433 3 B--weissii 0.00823 4 B-clarridg 0.04866 8 B--doshiae 0.01084 5 A-tumefaci 0.18813 Data set # 26: Neighbor-joining method Negative branch lengths allowed +-B-birtlesi ! ! +B--doshiae ! +--7 ! ! +-B-bacillif ! ! ! ! +B-vinsonii --2--8 +--9 ! ! ! +B-arupensi ! ! ! ! ! ! +B-spp-Deer ! ! ! +--3 ! +-12 +--6 +-B-clarridg ! ! ! ! ! ! +-10 +B--weissii ! ! ! ! ! ! ! ! +-B-berhoffi ! ! ! +--5 ! +-11 +B-henselae ! ! ! ! +B-elizabet ! ! +--1 ! +--4 +B-grahamii ! ! ! +B-quintana ! +-----------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 B-birtlesi 0.03697 2 8 0.00996 8 7 0.00079 7 B--doshiae 0.01249 7 B-bacillif 0.03241 8 12 0.00565 12 9 0.00268 9 B-vinsonii 0.00540 9 B-arupensi 0.00480 12 11 0.00034 11 10 0.00201 10 6 0.00502 6 3 0.00445 3 B-spp-Deer 0.00968 3 B-clarridg 0.04272 6 B--weissii 0.00605 10 5 0.00343 5 B-berhoffi 0.02047 5 B-henselae 0.00723 11 4 0.00641 4 1 0.01377 1 B-elizabet 0.01042 1 B-grahamii 0.01008 4 B-quintana 0.00698 2 A-tumefaci 0.19513 Data set # 27: Neighbor-joining method Negative branch lengths allowed +B-henselae +-11 ! ! +-B-berhoffi ! +-12 ! +B-quintana ! ! +--B-birtlesi +-10 +--2 ! ! +--3 +B-grahamii ! ! ! ! ! ! +--6 +B-elizabet ! ! ! ! ! ! ! +--B-bacillif ! +--9 +--8 ! +B-spp-Deer ! ! ! +--4 ! ! +--5 +B--weissii ! ! ! ! ! +--B-clarridg ! ! ! ! +B-arupensi ! +--7 ! +B-vinsonii ! --1B--doshiae ! +-------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 1 8 0.02951 8 10 0.00672 10 11 0.00628 11 B-henselae 0.01273 11 12 0.00147 12 B-berhoffi 0.04315 12 B-quintana 0.02365 10 9 0.00485 9 6 0.01093 6 3 0.01336 3 2 0.00412 2 B-birtlesi 0.04048 2 B-grahamii 0.00872 3 B-elizabet 0.00983 6 B-bacillif 0.04109 9 5 0.01067 5 4 0.00504 4 B-spp-Deer 0.01778 4 B--weissii 0.01312 5 B-clarridg 0.05241 8 7 0.00529 7 B-arupensi 0.00809 7 B-vinsonii 0.00201 1 B--doshiae 0.00040 1 A-tumefaci 0.23860 Data set # 28: Neighbor-joining method Negative branch lengths allowed +B-vinsonii ! ! +B--weissii ! +--3 ! ! ! +-B-clarridg ! +--4 +--2 +-12 ! ! +B-spp-Deer ! ! ! ! ! ! +--9 +B-bacillif ! ! ! ! ! ! ! ! +-B-quintana ! ! ! +--7 ! +-10 ! +-B-berhoffi ! ! +--6 +-11 ! +B-henselae ! ! ! ! ! ! +-B-birtlesi ! ! +--8 ! ! ! +B-elizabet ! ! +--1 ! ! +B-grahamii ! ! ! +B-arupensi ! --5B--doshiae ! +---------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 5 11 0.00940 11 12 0.00058 12 B-vinsonii 0.00527 12 10 0.00788 10 9 0.00475 9 4 0.02022 4 3 0.00806 3 B--weissii 0.01912 3 2 0.00533 2 B-clarridg 0.03110 2 B-spp-Deer 0.01730 4 B-bacillif 0.03197 9 7 0.01156 7 B-quintana 0.02681 7 6 0.00274 6 B-berhoffi 0.03156 6 B-henselae -0.00046 10 8 0.00903 8 B-birtlesi 0.03753 8 1 0.01592 1 B-elizabet 0.01048 1 B-grahamii 0.00972 11 B-arupensi 0.00815 5 B--doshiae 0.01002 5 A-tumefaci 0.27208 Data set # 29: Neighbor-joining method Negative branch lengths allowed +B-elizabet +--4 +--5 +--B-bacillif ! ! ! +B-grahamii +--6 ! ! +B-arupensi ! ! ! ! ! ! +B--doshiae ! +--7 +--8 ! ! ! +-B-vinsonii ! ! ! ! +--9 +B--weissii ! ! +--2 ! ! ! ! +---B-clarridg ! ! ! +--1 ! +-11 +B-spp-Deer ! ! ! ! +-B-berhoffi ! ! +-10 ! +-12 +B-henselae ! ! ! +B-quintana ! --3--B-birtlesi ! +--------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 6 0.02498 6 5 0.00636 5 4 0.00847 4 B-elizabet 0.01424 4 B-bacillif 0.04696 5 B-grahamii 0.01333 6 7 0.00255 7 B-arupensi 0.00855 7 9 0.00671 9 8 0.00247 8 B--doshiae 0.00832 8 B-vinsonii 0.02708 9 11 0.01648 11 2 0.02631 2 B--weissii 0.00478 2 1 0.02147 1 B-clarridg 0.07161 1 B-spp-Deer 0.00949 11 12 0.00121 12 10 0.00248 10 B-berhoffi 0.03230 10 B-henselae 0.01070 12 B-quintana 0.01907 3 B-birtlesi 0.04551 3 A-tumefaci 0.24209 Data set # 30: Neighbor-joining method Negative branch lengths allowed +B-vinsonii +--7 ! +B-arupensi ! ! +B-berhoffi ! +-10 +--9 +-11 +B-quintana ! ! ! ! ! ! ! +B-henselae ! ! ! ! ! ! +B--weissii ! +-12 +--3 ! ! +--4 +B-spp-Deer +--5 ! ! ! ! ! ! +--6 +--B-bacillif ! ! ! ! ! ! ! +--8 +--B-clarridg ! ! ! ! ! +B--doshiae ! ! ! ! +B-elizabet ! +--1 ! +B-grahamii ! --2-B-birtlesi ! +------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 5 0.01164 5 9 0.00976 9 7 0.00466 7 B-vinsonii 0.00894 7 B-arupensi 0.00436 9 12 0.00254 12 11 0.00204 11 10 0.00241 10 B-berhoffi 0.01840 10 B-quintana 0.00170 11 B-henselae 0.00774 12 8 0.00488 8 6 0.00424 6 4 0.00681 4 3 0.00526 3 B--weissii 0.00194 3 B-spp-Deer 0.00806 4 B-bacillif 0.03729 6 B-clarridg 0.04224 8 B--doshiae 0.01990 5 1 0.02149 1 B-elizabet 0.01117 1 B-grahamii 0.00553 2 B-birtlesi 0.03065 2 A-tumefaci 0.21725 Data set # 31: Neighbor-joining method Negative branch lengths allowed +B--weissii +--2 ! ! +-B-clarridg +--3 +--1 ! ! +B-spp-Deer +--6 ! ! ! +--B-bacillif ! ! ! +B--doshiae +--9 ! ! +B-arupensi ! ! +--8 ! ! ! +B-berhoffi ! +-10 ! ! +B-henselae ! +-11 ! ! +B-vinsonii ! +-12 ! +B-quintana ! ! +--B-birtlesi --7--5 ! ! +B-grahamii ! +--4 ! +B-elizabet ! +------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 7 9 0.00608 9 6 0.01357 6 3 0.01617 3 2 0.00583 2 B--weissii 0.00498 2 1 0.00872 1 B-clarridg 0.03410 1 B-spp-Deer 0.01460 3 B-bacillif 0.05082 6 B--doshiae 0.01985 9 10 0.00424 10 8 0.00431 8 B-arupensi 0.00565 8 B-berhoffi 0.01475 10 11 0.00566 11 B-henselae 0.00242 11 12 0.00098 12 B-vinsonii 0.00686 12 B-quintana -0.00016 7 5 0.01214 5 B-birtlesi 0.05086 5 4 0.01079 4 B-grahamii 0.00162 4 B-elizabet 0.00848 7 A-tumefaci 0.22013 Data set # 32: Neighbor-joining method Negative branch lengths allowed +-B-birtlesi ! ! +B--doshiae ! ! ! ! +B-grahamii --2--6 +--1 ! ! ! +B-elizabet ! ! ! ! ! ! +B-arupensi ! +--8 +-11 ! ! ! ! +B-vinsonii ! ! ! +-12 ! ! ! +B-quintana ! +-10 ! ! +B-henselae ! ! +--7 ! ! ! +B-berhoffi ! +--9 ! ! +B--weissii ! +--5 ! ! +-B-bacillif ! +--4 ! ! +B-spp-Deer ! +--3 ! +-B-clarridg ! +--------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 B-birtlesi 0.03244 2 6 0.01615 6 B--doshiae 0.01370 6 8 0.00451 8 1 0.02046 1 B-grahamii 0.00718 1 B-elizabet 0.00982 8 10 0.00332 10 11 0.00175 11 B-arupensi 0.00242 11 12 0.00088 12 B-vinsonii 0.01064 12 B-quintana 0.00976 10 9 0.00259 9 7 0.00281 7 B-henselae 0.00705 7 B-berhoffi 0.02415 9 5 0.01852 5 B--weissii 0.00821 5 4 0.00524 4 B-bacillif 0.02606 4 3 0.00579 3 B-spp-Deer 0.00383 3 B-clarridg 0.02737 2 A-tumefaci 0.24646 Data set # 33: Neighbor-joining method Negative branch lengths allowed +--B-birtlesi +-12 ! ! +B-arupensi ! +-10 ! +B-vinsonii ! +-11 +B-bacillif ! ! ! ! ! +--5 +B-spp-Deer ! ! ! ! +--3 ! ! ! +--4 +--B-clarridg ! ! ! ! ! +--9 +B--weissii ! ! ! ! +B-elizabet ! ! +--1 ! ! ! +B-grahamii ! +--8 ! ! +--B-berhoffi ! ! +--6 ! +--7 +B-henselae ! ! ! +B-quintana ! --2B--doshiae ! +--------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 11 0.01826 11 12 0.00031 12 B-birtlesi 0.04392 12 10 0.00623 10 B-arupensi 0.00532 10 B-vinsonii 0.00488 11 9 0.00950 9 5 0.01524 5 B-bacillif 0.02926 5 4 0.00582 4 3 0.00867 3 B-spp-Deer 0.00820 3 B-clarridg 0.04750 4 B--weissii 0.00543 9 8 0.00212 8 1 0.02001 1 B-elizabet 0.00770 1 B-grahamii 0.00240 8 7 0.00630 7 6 0.00379 6 B-berhoffi 0.03541 6 B-henselae 0.00269 7 B-quintana 0.01361 2 B--doshiae 0.01682 2 A-tumefaci 0.25078 Data set # 34: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +B-arupensi ! +--7 ! ! +B-vinsonii ! ! ! ! +B-henselae ! ! +--8 ! ! +--9 +-B-berhoffi --5-12 ! ! ! ! +-10 +B-quintana ! ! ! ! ! ! ! ! +-B-bacillif ! ! ! +--4 ! ! ! ! +B--weissii ! ! ! +--3 ! +-11 ! +B-spp-Deer ! ! +--2 ! ! +--B-clarridg ! ! ! ! +B-grahamii ! ! +--1 ! +--6 +B-elizabet ! ! ! +--B-birtlesi ! +---------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 5 B--doshiae 0.00118 5 12 0.01799 12 7 0.00814 7 B-arupensi 0.00233 7 B-vinsonii 0.01097 12 11 0.00180 11 10 0.00241 10 9 0.00669 9 8 0.00477 8 B-henselae 0.00424 8 B-berhoffi 0.02996 9 B-quintana 0.00873 10 4 0.02075 4 B-bacillif 0.04785 4 3 0.00657 3 B--weissii 0.01018 3 2 0.00377 2 B-spp-Deer 0.00300 2 B-clarridg 0.04930 11 6 0.01686 6 1 0.01819 1 B-grahamii 0.01277 1 B-elizabet 0.01083 6 B-birtlesi 0.04521 5 A-tumefaci 0.26472 Data set # 35: Neighbor-joining method Negative branch lengths allowed +B-vinsonii ! ! +-B-spp-Deer ! +--3 ! +--4 +--B-clarridg +--9 ! ! ! ! +-10 +B--weissii ! ! ! ! ! ! +-11 +-B-berhoffi ! ! ! ! ! +-12 +B-henselae ! ! +--8 +B-quintana ! ! ! ! +-B-birtlesi ! ! +--5 ! ! ! +--B-bacillif ! ! +--6 ! ! ! ! +B-grahamii ! +--7 +--2 ! ! +B-elizabet ! ! ! +B-arupensi ! --1B--doshiae ! +--------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 1 8 0.03707 8 9 0.00641 9 B-vinsonii 0.01402 9 12 0.00599 12 11 0.00258 11 10 0.00366 10 4 0.01248 4 3 0.00643 3 B-spp-Deer 0.01736 3 B-clarridg 0.03534 4 B--weissii 0.01482 10 B-berhoffi 0.03407 11 B-henselae 0.01090 12 B-quintana 0.00685 8 7 0.00177 7 6 0.00512 6 5 0.00743 5 B-birtlesi 0.03814 5 B-bacillif 0.04586 6 2 0.01889 2 B-grahamii 0.00531 2 B-elizabet 0.00839 7 B-arupensi 0.01222 1 B--doshiae 0.00515 1 A-tumefaci 0.25775 Data set # 36: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +--B-bacillif ! +--2 ! +--3 +B-spp-Deer ! ! ! ! +--5 +B--weissii ! ! ! ! ! +--B-clarridg ! +--9 ! ! ! +B-arupensi ! ! ! +--8 ! ! ! ! +B-vinsonii ! ! +-10 ! ! ! +B-quintana --6--7 +-11 ! ! ! +B-henselae ! ! +-12 ! ! +B-berhoffi ! ! ! ! +B-grahamii ! ! +--1 ! +--4 +B-elizabet ! ! ! +--B-birtlesi ! +-----------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 6 B--doshiae 0.01706 6 7 0.01427 7 9 0.00380 9 5 0.01848 5 3 0.00971 3 2 0.00665 2 B-bacillif 0.04070 2 B-spp-Deer 0.01810 3 B--weissii 0.00685 5 B-clarridg 0.04186 9 10 0.00527 10 8 0.00629 8 B-arupensi 0.00581 8 B-vinsonii 0.00429 10 11 0.00242 11 B-quintana 0.01234 11 12 0.00116 12 B-henselae 0.01489 12 B-berhoffi 0.02641 7 4 0.02033 4 1 0.00964 1 B-grahamii 0.00709 1 B-elizabet 0.00971 4 B-birtlesi 0.04396 6 A-tumefaci 0.20154 Data set # 37: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +--B-birtlesi ! +--8 ! ! ! +B-grahamii ! +--9 +--2 ! ! ! +B-elizabet ! ! ! ! +-11 +--B-bacillif ! ! ! ! ! ! +B-vinsonii ! ! +--7 ! ! +B-arupensi ! ! -10-12 +B-berhoffi ! ! +--4 ! ! ! +B-quintana ! ! +--5 ! ! ! ! +B-spp-Deer ! ! ! ! +--1 ! +--6 +--3 +-B-clarridg ! ! ! ! ! +B--weissii ! ! ! +B-henselae ! +------------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 10 B--doshiae 0.02306 10 12 0.00312 12 11 0.00134 11 9 0.00962 9 8 0.00309 8 B-birtlesi 0.05476 8 2 0.01539 2 B-grahamii 0.01144 2 B-elizabet 0.01626 9 B-bacillif 0.05441 11 7 0.00922 7 B-vinsonii 0.02121 7 B-arupensi 0.00299 12 6 0.01600 6 5 0.00385 5 4 0.00548 4 B-berhoffi 0.02119 4 B-quintana 0.00651 5 3 0.00705 3 1 0.01601 1 B-spp-Deer 0.01664 1 B-clarridg 0.04386 3 B--weissii 0.01304 6 B-henselae 0.02089 10 A-tumefaci 0.31154 Data set # 38: Neighbor-joining method Negative branch lengths allowed +-B-quintana +--8 ! ! +B-henselae ! +--7 ! +-B-berhoffi +-12 ! ! +-B-birtlesi ! ! +--6 ! ! ! ! +B-elizabet ! ! ! +--1 ! +-11 +B-grahamii ! ! +-10 ! +B-vinsonii ! ! +--9 ! ! +B-arupensi ! ! ! ! +B-spp-Deer ! ! +--2 ! ! +--3 +-B-clarridg ! ! ! ! ! +--4 +B--weissii ! ! ! +--B-bacillif ! --5B--doshiae ! +---------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 5 10 0.02398 10 12 0.00612 12 8 0.00773 8 B-quintana 0.02206 8 7 0.00514 7 B-henselae -0.00037 7 B-berhoffi 0.03607 12 11 0.00179 11 6 0.01601 6 B-birtlesi 0.04166 6 1 0.01669 1 B-elizabet 0.00554 1 B-grahamii 0.00136 11 9 0.00676 9 B-vinsonii 0.01466 9 B-arupensi 0.00634 10 4 0.02854 4 3 0.00859 3 2 0.00285 2 B-spp-Deer 0.01485 2 B-clarridg 0.04225 3 B--weissii 0.00775 4 B-bacillif 0.04226 5 B--doshiae 0.02323 5 A-tumefaci 0.26597 Data set # 39: Neighbor-joining method Negative branch lengths allowed +B--weissii +--5 ! ! +--B-clarridg ! +--4 +-11 +B-spp-Deer ! ! ! ! +B-quintana +-12 +-10 ! ! +-B-berhoffi +--9 ! ! ! +B-henselae ! ! ! +B-vinsonii ! +--8 +-B-birtlesi ! ! +--3 ! ! ! ! +B-elizabet ! ! +--6 +--1 ! ! ! ! +B-grahamii ! +--7 ! ! ! +---B-bacillif ! ! ! +B-arupensi ! --2B--doshiae ! +--------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 8 0.02113 8 9 0.00443 9 12 0.00890 12 11 0.00020 11 5 0.01247 5 B--weissii 0.00634 5 4 0.00731 4 B-clarridg 0.05369 4 B-spp-Deer 0.01901 11 10 0.00174 10 B-quintana 0.01968 10 B-berhoffi 0.02462 12 B-henselae 0.02258 9 B-vinsonii 0.00305 8 7 0.00244 7 6 0.00611 6 3 0.01204 3 B-birtlesi 0.04764 3 1 0.00946 1 B-elizabet 0.01027 1 B-grahamii 0.01663 6 B-bacillif 0.07181 7 B-arupensi 0.00178 2 B--doshiae 0.01354 2 A-tumefaci 0.25716 Data set # 40: Neighbor-joining method Negative branch lengths allowed +-B-birtlesi ! ! +B-arupensi ! +-12 ! ! +B-vinsonii ! ! ! +-11 +B-henselae ! ! ! +--6 ! ! ! +--7 +B-berhoffi ! ! ! ! ! ! ! +--9 +B-quintana ! ! ! --4-10 ! +B-elizabet ! ! +--1 ! ! +B-grahamii ! ! ! ! +B--doshiae ! ! ! ! +--8 +B--weissii ! ! +--3 ! ! ! ! +--B-clarridg ! +--5 +--2 ! ! +B-spp-Deer ! ! ! +-B-bacillif ! +--------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 4 B-birtlesi 0.02710 4 10 0.00948 10 11 0.00290 11 12 0.00117 12 B-arupensi 0.00515 12 B-vinsonii 0.00485 11 9 0.00299 9 7 0.00432 7 6 0.00647 6 B-henselae 0.00721 6 B-berhoffi 0.02709 7 B-quintana 0.01943 9 1 0.02213 1 B-elizabet 0.00358 1 B-grahamii 0.00302 10 8 0.00290 8 B--doshiae 0.01620 8 5 0.01122 5 3 0.00720 3 B--weissii 0.00591 3 2 0.00444 2 B-clarridg 0.03980 2 B-spp-Deer 0.00140 5 B-bacillif 0.02883 4 A-tumefaci 0.25640 Data set # 41: Neighbor-joining method Negative branch lengths allowed +B-berhoffi +--8 ! +B-henselae +-10 ! ! +B-grahamii ! ! ! ! +--7 +---B-birtlesi +-12 ! +--5 ! ! +--6 +--B-bacillif ! ! ! ! ! +B-elizabet +-11 ! ! ! +B-quintana ! ! ! ! +B-arupensi +--4 +--9 ! ! +B-vinsonii ! ! ! ! +-B-clarridg ! +--3 ! ! +B--weissii ! +--1 ! +B-spp-Deer ! --2B--doshiae ! +----------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 4 0.00927 4 11 0.01271 11 12 0.00091 12 10 0.00107 10 8 0.00415 8 B-berhoffi 0.01741 8 B-henselae 0.01359 10 7 0.00840 7 B-grahamii 0.00936 7 6 0.00334 6 5 0.00455 5 B-birtlesi 0.05785 5 B-bacillif 0.04215 6 B-elizabet 0.00840 12 B-quintana 0.00882 11 9 0.00365 9 B-arupensi 0.00776 9 B-vinsonii 0.00574 4 3 0.00493 3 B-clarridg 0.03571 3 1 0.01294 1 B--weissii 0.00174 1 B-spp-Deer 0.01176 2 B--doshiae 0.00171 2 A-tumefaci 0.18349 Data set # 42: Neighbor-joining method Negative branch lengths allowed +B-arupensi +--7 ! +B-vinsonii ! ! +B-quintana +-12 +--9 ! ! ! ! +B-henselae ! ! ! +--8 ! ! ! +B-berhoffi ! +-10 ! ! +-B-bacillif ! ! +--2 +-11 ! ! ! +B-spp-Deer ! ! +--3 +--1 ! ! ! +B--weissii ! ! ! ! ! +---B-clarridg ! ! ! ! +--B-birtlesi ! +--6 ! ! +B-grahamii ! +--4 ! +B-elizabet ! --5B--doshiae ! +-------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 5 11 0.01411 11 12 0.00080 12 7 0.01007 7 B-arupensi 0.00265 7 B-vinsonii 0.00065 12 10 0.00433 10 9 0.00337 9 B-quintana 0.00502 9 8 0.00703 8 B-henselae 0.00617 8 B-berhoffi 0.02523 10 3 0.02193 3 2 0.01130 2 B-bacillif 0.03666 2 1 0.00844 1 B-spp-Deer 0.01765 1 B--weissii 0.00285 3 B-clarridg 0.05053 11 6 0.01072 6 B-birtlesi 0.04158 6 4 0.00752 4 B-grahamii 0.00838 4 B-elizabet 0.01542 5 B--doshiae 0.01036 5 A-tumefaci 0.23244 Data set # 43: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +B-elizabet ! +--3 ! +--9 +B-grahamii ! ! ! ! +-12 +-B-birtlesi ! ! ! ! ! ! +B-vinsonii ! ! +--7 ! ! +B-arupensi ! ! --8-11 +--B-clarridg ! ! +--2 ! ! ! ! +B--weissii ! ! +--4 +--1 ! ! ! ! +B-spp-Deer ! ! ! ! ! +-10 +--B-bacillif ! ! ! ! +--B-berhoffi ! ! +--5 ! +--6 +B-henselae ! ! ! +B-quintana ! +----------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 8 B--doshiae 0.00879 8 11 0.00575 11 12 0.00227 12 9 0.00288 9 3 0.01474 3 B-elizabet 0.00564 3 B-grahamii 0.00126 9 B-birtlesi 0.03201 12 7 0.00626 7 B-vinsonii 0.01285 7 B-arupensi 0.00805 11 10 0.00278 10 4 0.01416 4 2 0.00793 2 B-clarridg 0.04616 2 1 0.00809 1 B--weissii 0.00084 1 B-spp-Deer 0.00616 4 B-bacillif 0.03825 10 6 0.00567 6 5 0.00435 5 B-berhoffi 0.04147 5 B-henselae 0.02083 6 B-quintana 0.01695 8 A-tumefaci 0.28361 Data set # 44: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +B-bacillif ! ! ! +--5 +B--weissii ! ! ! +--2 ! ! +--4 +B-spp-Deer ! ! ! ! ! +B-clarridg ! ! --1--7 +B-grahamii ! ! +--3 ! ! +-10 +B-elizabet ! ! ! ! ! ! +-12 +-B-birtlesi ! ! ! ! ! ! ! +B-quintana ! +-11 ! ! +B-arupensi ! ! +--8 ! ! ! +B-vinsonii ! +--9 ! ! +B-berhoffi ! +--6 ! +B-henselae ! +--------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 1 B--doshiae 0.00386 1 7 0.02187 7 5 0.00652 5 B-bacillif 0.02914 5 4 0.00388 4 2 0.00648 2 B--weissii 0.00102 2 B-spp-Deer 0.00238 4 B-clarridg 0.02087 7 11 0.00788 11 12 0.00195 12 10 0.00373 10 3 0.00891 3 B-grahamii 0.00386 3 B-elizabet 0.00624 10 B-birtlesi 0.03249 12 B-quintana 0.01203 11 9 0.00488 9 8 0.00360 8 B-arupensi 0.00273 8 B-vinsonii 0.01067 9 6 0.00673 6 B-berhoffi 0.01267 6 B-henselae 0.00793 1 A-tumefaci 0.24584 Data set # 45: Neighbor-joining method Negative branch lengths allowed +B--weissii +--2 +--3 +B-spp-Deer ! ! +--5 +--B-clarridg ! ! ! +-B-bacillif ! ! +B-henselae +--9 +--6 ! ! +--7 +-B-berhoffi ! ! ! ! ! ! ! +-B-quintana ! ! ! ! +-11 +-B-elizabet ! ! +--8 ! ! ! ! +B-grahamii ! ! ! +--4 ! +-12 +-B-birtlesi ! ! ! ! +B-vinsonii ! +-10 ! +B-arupensi ! --1B--doshiae ! +---------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 1 9 0.02458 9 5 0.01068 5 3 0.01530 3 2 0.00440 2 B--weissii 0.00471 2 B-spp-Deer 0.00209 3 B-clarridg 0.04465 5 B-bacillif 0.03025 9 11 0.00591 11 7 0.00800 7 6 0.00291 6 B-henselae 0.00253 6 B-berhoffi 0.01827 7 B-quintana 0.01999 11 12 0.00125 12 8 0.00671 8 B-elizabet 0.02208 8 4 0.01022 4 B-grahamii 0.00183 4 B-birtlesi 0.02987 12 10 0.00494 10 B-vinsonii 0.00272 10 B-arupensi 0.00408 1 B--doshiae 0.00255 1 A-tumefaci 0.26635 Data set # 46: Neighbor-joining method Negative branch lengths allowed +B-quintana +--8 ! ! +B-henselae ! +--6 +--9 +-B-berhoffi ! ! ! ! +B-vinsonii ! +--7 ! +B-arupensi +-12 ! ! +B-elizabet ! ! +--1 ! ! ! +B-grahamii ! ! ! ! +-11 +B--weissii +-10 ! +--3 ! ! ! ! ! +-B-clarridg ! ! +--5 +--2 ! ! ! +B-spp-Deer ! ! ! ! ! +--B-bacillif ! ! ! +-B-birtlesi ! --4B--doshiae ! +-------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 4 10 0.00991 10 12 0.00387 12 9 0.00610 9 8 0.00368 8 B-quintana 0.01616 8 6 0.00639 6 B-henselae 0.00922 6 B-berhoffi 0.03248 9 7 0.00571 7 B-vinsonii 0.00626 7 B-arupensi 0.00384 12 11 0.00128 11 1 0.02211 1 B-elizabet 0.00534 1 B-grahamii 0.00136 11 5 0.00935 5 3 0.01269 3 B--weissii 0.00690 3 2 0.00335 2 B-clarridg 0.03349 2 B-spp-Deer 0.01541 5 B-bacillif 0.03831 10 B-birtlesi 0.03914 4 B--doshiae 0.00536 4 A-tumefaci 0.23884 Data set # 47: Neighbor-joining method Negative branch lengths allowed +B-henselae ! ! +B-vinsonii +-12 +--4 ! ! +--7 +B-arupensi ! ! ! ! ! +-10 +-B-berhoffi +-11 ! ! ! +B-quintana ! ! ! ! +B--weissii ! +--8 ! ! +-B-spp-Deer +--9 +--6 ! ! +-B-clarridg ! ! ! ! +B-elizabet ! ! +--1 ! ! +--2 +B-grahamii ! ! ! ! ! +--5 +-B-birtlesi ! ! ! +-B-bacillif ! --3B--doshiae ! +--------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 9 0.02165 9 11 0.00324 11 12 0.00116 12 B-henselae 0.00940 12 10 0.00168 10 7 0.00688 7 4 0.00698 4 B-vinsonii 0.01579 4 B-arupensi 0.00761 7 B-berhoffi 0.02742 10 B-quintana 0.01722 11 8 0.00534 8 B--weissii 0.01142 8 6 0.00583 6 B-spp-Deer 0.02374 6 B-clarridg 0.02766 9 5 0.01011 5 2 0.02010 2 1 0.01489 1 B-elizabet 0.00568 1 B-grahamii 0.00762 2 B-birtlesi 0.03046 5 B-bacillif 0.03395 3 B--doshiae -0.00228 3 A-tumefaci 0.25768 Data set # 48: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +B-arupensi ! +-10 ! ! ! +B-vinsonii ! ! +-11 ! ! ! +B-quintana ! ! +-12 ! ! ! +B-henselae ! ! +--7 ! ! +B-berhoffi --6--9 ! ! +B-spp-Deer ! ! +--2 ! ! +--3 +-B-bacillif ! ! ! ! ! ! +--4 +-B-clarridg ! ! ! ! ! ! ! +B--weissii ! +--8 ! ! +B-elizabet ! ! +--1 ! +--5 +B-grahamii ! ! ! +-B-birtlesi ! +-----------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 6 B--doshiae 0.01157 6 9 0.01492 9 10 0.00185 10 B-arupensi 0.00430 10 11 0.00175 11 B-vinsonii 0.00805 11 12 0.00127 12 B-quintana 0.00516 12 7 0.00669 7 B-henselae 0.00874 7 B-berhoffi 0.02216 9 8 0.00265 8 4 0.01537 4 3 0.00580 3 2 0.00766 2 B-spp-Deer 0.00766 2 B-bacillif 0.03014 3 B-clarridg 0.03479 4 B--weissii 0.01200 8 5 0.01459 5 1 0.01553 1 B-elizabet 0.00839 1 B-grahamii 0.00841 5 B-birtlesi 0.04122 6 A-tumefaci 0.19823 Data set # 49: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +B-arupensi ! +-12 ! ! +B-vinsonii ! ! ! ! +B-spp-Deer ! ! +--2 ! ! +--5 +--B-clarridg ! ! ! ! --4-11 +--6 +B--weissii ! ! ! ! ! ! ! +-B-bacillif ! ! +--9 ! ! ! ! +B-elizabet ! ! ! ! +--1 ! ! ! +--3 +B-grahamii ! +-10 ! ! ! +-B-birtlesi ! ! ! ! +--B-berhoffi ! ! +--7 ! +--8 +B-quintana ! ! ! +B-henselae ! +------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 4 B--doshiae 0.00548 4 11 0.01252 11 12 0.00058 12 B-arupensi 0.00448 12 B-vinsonii 0.00912 11 10 0.00295 10 9 0.00367 9 6 0.01003 6 5 0.00396 5 2 0.00618 2 B-spp-Deer 0.00999 2 B-clarridg 0.03921 5 B--weissii 0.01132 6 B-bacillif 0.03861 9 3 0.01194 3 1 0.01047 1 B-elizabet 0.01025 1 B-grahamii 0.01025 3 B-birtlesi 0.04358 10 8 0.00482 8 7 0.00229 7 B-berhoffi 0.03711 7 B-quintana 0.01519 8 B-henselae 0.00481 4 A-tumefaci 0.22052 Data set # 50: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +B-arupensi ! ! ! ! +B-vinsonii --5--7 ! ! ! ! +B-henselae ! ! ! ! ! ! ! +-11 +B-quintana ! +--8 ! ! ! ! ! ! ! ! +--B-clarridg ! ! ! +-12 ! ! ! ! ! +--6 +B-bacillif ! ! ! ! ! ! +--3 ! ! ! ! ! +--4 +B-spp-Deer ! +-10 +--9 ! ! ! ! +B--weissii ! ! ! ! ! +B-berhoffi ! ! ! ! +B-grahamii ! ! +--1 ! +--2 +B-elizabet ! ! ! +--B-birtlesi ! +--------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 5 B--doshiae 0.00282 5 7 0.01612 7 B-arupensi 0.00263 7 8 0.00261 8 B-vinsonii 0.00849 8 10 0.00517 10 11 0.00174 11 B-henselae 0.00581 11 12 0.00167 12 B-quintana 0.00564 12 9 0.00299 9 6 0.01811 6 B-clarridg 0.04653 6 4 0.00710 4 3 0.00475 3 B-bacillif 0.02687 3 B-spp-Deer 0.01493 4 B--weissii 0.01250 9 B-berhoffi 0.02353 10 2 0.02396 2 1 0.00643 1 B-grahamii 0.01039 1 B-elizabet 0.00681 2 B-birtlesi 0.05117 5 A-tumefaci 0.24268 Data set # 51: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +---B-bacillif ! ! ! +--6 +B-grahamii ! ! ! +--3 ! ! +--4 +-B-birtlesi ! ! ! ! +--8 +B-elizabet ! ! ! ! ! ! +B-quintana ! ! ! ! ! ! ! ! +B-vinsonii ! ! +-11 +--9 ! ! ! +-10 +B-arupensi --1--7 ! ! ! ! ! +-12 +-B-berhoffi ! ! ! ! ! +B-henselae ! ! ! ! +---B-clarridg ! ! +--2 ! +--5 +B-spp-Deer ! ! ! +B--weissii ! +-------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 1 B--doshiae -0.00138 1 7 0.02662 7 8 0.00446 8 6 0.00744 6 B-bacillif 0.05857 6 4 0.01373 4 3 0.00727 3 B-grahamii 0.00625 3 B-birtlesi 0.04345 4 B-elizabet 0.01413 8 11 0.00803 11 B-quintana 0.01482 11 12 0.00268 12 10 0.00784 10 9 0.00275 9 B-vinsonii 0.01248 9 B-arupensi 0.00472 10 B-berhoffi 0.03215 12 B-henselae 0.00429 7 5 0.01284 5 2 0.01253 2 B-clarridg 0.06758 2 B-spp-Deer 0.00682 5 B--weissii 0.00177 1 A-tumefaci 0.23468 Data set # 52: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +B-spp-Deer ! +--3 ! +--4 +B--weissii ! ! ! ! +--5 +-B-bacillif ! ! ! ! ! +--B-clarridg ! ! ! ! +B-elizabet ! ! +--2 --1--7 +--6 +B-grahamii ! ! ! ! ! ! +--9 +---B-birtlesi ! ! ! ! ! ! ! ! +B-berhoffi ! ! ! +--8 ! +-10 +B-arupensi ! ! ! ! +B-vinsonii ! ! +-11 ! +-12 +B-quintana ! ! ! +B-henselae ! +---------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 1 B--doshiae 0.00981 1 7 0.02167 7 5 0.01417 5 4 0.00751 4 3 0.00517 3 B-spp-Deer 0.01530 3 B--weissii 0.00150 4 B-bacillif 0.03988 5 B-clarridg 0.04394 7 10 0.00440 10 9 0.00383 9 6 0.01248 6 2 0.01441 2 B-elizabet 0.01240 2 B-grahamii 0.00780 6 B-birtlesi 0.06869 9 8 0.00173 8 B-berhoffi 0.02041 8 B-arupensi 0.00319 10 12 0.00371 12 11 0.00156 11 B-vinsonii 0.00957 11 B-quintana 0.00053 12 B-henselae 0.01549 1 A-tumefaci 0.26119 Data set # 53: Neighbor-joining method Negative branch lengths allowed +B--weissii +--2 ! ! +B-spp-Deer +--4 +--1 ! ! +----B-clarridg +--6 ! ! ! +-B-bacillif ! ! +-10 +B--doshiae ! ! ! ! +-B-berhoffi ! ! +--7 +-12 +--8 +B-quintana ! ! ! ! ! +B-henselae ! ! ! ! +B-arupensi ! +-11 ! +B-vinsonii ! ! +B-grahamii ! +--3 --9--5 +B-elizabet ! ! ! +--B-birtlesi ! +------------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 9 12 0.00621 12 10 0.00592 10 6 0.00922 6 4 0.00776 4 2 0.01008 2 B--weissii 0.01179 2 1 0.01016 1 B-spp-Deer 0.01581 1 B-clarridg 0.07569 4 B-bacillif 0.04440 6 B--doshiae 0.01602 10 8 0.01240 8 7 0.00145 7 B-berhoffi 0.04432 7 B-quintana 0.01808 8 B-henselae 0.00515 12 11 0.00182 11 B-arupensi 0.01356 11 B-vinsonii 0.00994 9 5 0.00818 5 3 0.00582 3 B-grahamii 0.00775 3 B-elizabet 0.01935 5 B-birtlesi 0.04733 9 A-tumefaci 0.31157 Data set # 54: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +B-arupensi ! ! ! ! +B-henselae ! ! +--7 ! ! +--8 +B-berhoffi --1-12 ! ! ! ! +--9 +B-quintana ! ! ! ! ! ! ! +B-vinsonii ! ! ! ! ! ! +--B-clarridg ! +-11 +--3 ! ! ! ! +B-spp-Deer ! ! +--4 +--2 ! ! ! ! +B--weissii ! ! ! ! ! +-10 +--B-bacillif ! ! ! ! +--B-birtlesi ! +--6 ! ! +B-elizabet ! +--5 ! +B-grahamii ! +-----------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 1 B--doshiae 0.00703 1 12 0.02743 12 B-arupensi 0.01072 12 11 0.00249 11 9 0.00551 9 8 0.00564 8 7 0.00425 7 B-henselae 0.01168 7 B-berhoffi 0.02322 8 B-quintana 0.01115 9 B-vinsonii 0.01161 11 10 0.00396 10 4 0.03554 4 3 0.00788 3 B-clarridg 0.05682 3 2 0.00388 2 B-spp-Deer 0.01232 2 B--weissii 0.00818 4 B-bacillif 0.04068 10 6 0.00618 6 B-birtlesi 0.04337 6 5 0.01433 5 B-elizabet 0.00896 5 B-grahamii 0.00454 1 A-tumefaci 0.30217 Data set # 55: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +B-henselae ! +-12 ! +-11 +-B-berhoffi ! ! ! ! ! +B-quintana ! ! ! ! +-B-bacillif ! +-10 ! ! ! ! ! +--B-birtlesi ! ! ! +--7 +--1 ! ! ! ! ! +--2 +B-grahamii ! ! ! ! ! ! ! ! ! +--9 +--6 +B-elizabet --3--8 ! ! ! ! ! +B-arupensi ! ! ! ! ! +B-vinsonii ! ! ! ! +B--weissii ! +--5 ! ! +B-spp-Deer ! +--4 ! +--B-clarridg ! +--------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 B--doshiae -0.00008 3 8 0.02272 8 10 0.00816 10 11 0.00717 11 12 0.00190 12 B-henselae 0.00864 12 B-berhoffi 0.03366 11 B-quintana 0.00660 10 9 0.00192 9 7 0.00906 7 B-bacillif 0.03411 7 6 0.00360 6 2 0.01161 2 1 0.01138 1 B-birtlesi 0.04909 1 B-grahamii 0.00871 2 B-elizabet 0.01422 6 B-arupensi 0.00404 9 B-vinsonii 0.00787 8 5 0.00863 5 B--weissii 0.00877 5 4 0.00543 4 B-spp-Deer 0.01328 4 B-clarridg 0.04312 3 A-tumefaci 0.24798 Data set # 56: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +B-vinsonii ! +--7 ! ! +B-arupensi ! ! ! ! +B--weissii ! ! +--2 ! ! +--3 +B-spp-Deer ! ! ! ! ! ! +--5 +-B-bacillif --1--8 ! ! ! ! +--9 +-B-clarridg ! ! ! ! ! ! +-11 +-B-berhoffi ! ! ! ! ! ! +-12 +B-quintana ! ! ! ! ! ! ! +B-henselae ! +-10 ! ! +B-grahamii ! ! +--4 ! +--6 +B-elizabet ! ! ! +--B-birtlesi ! +-----------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 1 B--doshiae 0.00425 1 8 0.02506 8 7 0.00262 7 B-vinsonii 0.00446 7 B-arupensi 0.00214 8 10 0.00496 10 12 0.00209 12 11 0.00167 11 9 0.00271 9 5 0.00593 5 3 0.01783 3 2 0.00701 2 B--weissii 0.00314 2 B-spp-Deer 0.01366 3 B-bacillif 0.04094 5 B-clarridg 0.04014 9 B-berhoffi 0.03832 11 B-quintana 0.01294 12 B-henselae 0.00884 10 6 0.00656 6 4 0.01399 4 B-grahamii 0.00522 4 B-elizabet 0.00468 6 B-birtlesi 0.05281 1 A-tumefaci 0.20485 Data set # 57: Neighbor-joining method Negative branch lengths allowed +---B-birtlesi +--6 ! ! +B-grahamii ! +--1 ! +B-elizabet ! ! +B-vinsonii +-11 +--8 ! ! +--9 +B-arupensi ! ! ! ! ! ! +-10 +B-berhoffi ! ! ! ! ! ! ! +B-quintana ! +-12 +--7 ! +-B-bacillif ! ! ! +--3 ! ! ! ! ! +B-spp-Deer ! ! +--5 +--2 ! ! ! +B--weissii ! ! ! ! ! +--B-clarridg ! ! ! +B-henselae ! --4B--doshiae ! +--------------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 4 7 0.01066 7 11 0.00355 11 6 0.01022 6 B-birtlesi 0.05136 6 1 0.01304 1 B-grahamii 0.00871 1 B-elizabet 0.00829 11 12 0.00209 12 10 0.00238 10 9 0.00678 9 8 0.00122 8 B-vinsonii 0.01271 8 B-arupensi 0.00429 9 B-berhoffi 0.02663 10 B-quintana 0.01595 12 5 0.01278 5 3 0.00726 3 B-bacillif 0.03433 3 2 0.00712 2 B-spp-Deer 0.00336 2 B--weissii 0.00004 5 B-clarridg 0.05297 7 B-henselae 0.01159 4 B--doshiae 0.01498 4 A-tumefaci 0.35392 Data set # 58: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +B-arupensi ! ! ! ! +--B-birtlesi ! ! +--4 ! ! +--5 +B-grahamii ! ! ! ! --1--8 ! +B-elizabet ! ! +--7 ! ! ! ! +-B-bacillif ! ! ! ! ! ! ! ! +--6 +-B-clarridg ! ! ! ! +--2 ! +--9 +--3 +B-spp-Deer ! ! ! ! ! +B--weissii ! ! ! ! +B-vinsonii ! +-10 ! ! +B-quintana ! +-11 ! ! +B-berhoffi ! +-12 ! +B-henselae ! +--------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 1 B--doshiae 0.00097 1 8 0.02334 8 B-arupensi 0.00526 8 9 0.00397 9 7 0.00683 7 5 0.01662 5 4 0.00288 4 B-birtlesi 0.04704 4 B-grahamii 0.00916 5 B-elizabet 0.01087 7 6 0.01357 6 B-bacillif 0.03848 6 3 0.00897 3 2 0.00314 2 B-clarridg 0.03932 2 B-spp-Deer 0.01268 3 B--weissii 0.00716 9 10 0.00175 10 B-vinsonii 0.01106 10 11 0.00325 11 B-quintana 0.01233 11 12 0.00137 12 B-berhoffi 0.02392 12 B-henselae 0.00708 1 A-tumefaci 0.24193 Data set # 59: Neighbor-joining method Negative branch lengths allowed +B-henselae ! ! +B-vinsonii ! +--8 ! ! +B-arupensi ! ! +-10 +-12 +B-quintana ! ! ! ! ! ! ! ! ! ! +---B-clarridg ! ! ! +--9 ! ! ! ! ! +--5 +B-spp-Deer ! ! ! ! ! ! +--2 ! ! ! ! ! +--3 +B-bacillif ! +-11 +--7 ! ! ! ! +B--weissii ! ! ! ! ! +-B-berhoffi ! ! ! ! +-B-birtlesi ! ! +--4 ! +--6 +B-grahamii ! ! ! +B-elizabet ! --1B--doshiae ! +----------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 1 10 0.02106 10 B-henselae 0.01384 10 11 0.00291 11 12 0.00252 12 8 0.00633 8 B-vinsonii 0.01118 8 B-arupensi -0.00088 12 9 0.00506 9 B-quintana 0.00733 9 7 0.00396 7 5 0.01082 5 B-clarridg 0.06627 5 3 0.01258 3 2 0.00220 2 B-spp-Deer 0.01479 2 B-bacillif 0.02781 3 B--weissii 0.01340 7 B-berhoffi 0.02377 11 6 0.01032 6 4 0.00847 4 B-birtlesi 0.04639 4 B-grahamii 0.00751 6 B-elizabet 0.01688 1 B--doshiae 0.00752 1 A-tumefaci 0.28548 Data set # 60: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +---B-clarridg ! +--2 ! ! ! +B-spp-Deer ! +--3 +--1 ! ! ! +B--weissii ! ! ! ! ! +-B-bacillif ! ! ! ! +--B-birtlesi --4--7 +--8 ! ! ! ! +B-elizabet ! ! ! +--5 ! ! +-11 +B-grahamii ! ! ! ! ! ! ! ! +-B-vinsonii ! +-12 +--6 ! ! +B-arupensi ! ! ! ! +B-henselae ! +-10 ! ! +B-quintana ! +--9 ! +-B-berhoffi ! +---------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 4 B--doshiae 0.01642 4 7 0.02065 7 3 0.03089 3 2 0.00649 2 B-clarridg 0.05265 2 1 0.00445 1 B-spp-Deer 0.02128 1 B--weissii 0.00952 3 B-bacillif 0.03443 7 12 0.00813 12 11 0.00150 11 8 0.00543 8 B-birtlesi 0.05071 8 5 0.01354 5 B-elizabet 0.00765 5 B-grahamii 0.00925 11 6 0.00977 6 B-vinsonii 0.02418 6 B-arupensi 0.00642 12 10 0.00772 10 B-henselae 0.01214 10 9 0.00206 9 B-quintana 0.01081 9 B-berhoffi 0.02689 4 A-tumefaci 0.26398 Data set # 61: Neighbor-joining method Negative branch lengths allowed +B-elizabet +--4 ! +B-grahamii ! +--8 +--B-birtlesi ! ! ! ! ! ! +B-quintana ! ! ! +-11 ! +--9 ! +B-henselae ! ! +-12 ! ! ! ! +B-vinsonii ! ! ! ! +--6 ! ! ! +--7 +B-arupensi ! +-10 ! ! ! +B-berhoffi ! ! ! ! +-B-bacillif ! ! ! ! +--3 +B-spp-Deer ! ! +--1 ! +--2 +--B-clarridg ! ! ! +B--weissii ! --5B--doshiae ! +-----------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 5 8 0.01338 8 4 0.01329 4 B-elizabet 0.00429 4 B-grahamii 0.00571 8 9 0.00191 9 B-birtlesi 0.04835 9 10 0.00281 10 12 0.00561 12 11 0.00052 11 B-quintana 0.00804 11 B-henselae 0.00556 12 7 0.00729 7 6 0.00636 6 B-vinsonii 0.01411 6 B-arupensi 0.00609 7 B-berhoffi 0.01784 10 3 0.02750 3 B-bacillif 0.03961 3 2 0.00409 2 1 0.00281 1 B-spp-Deer 0.00824 1 B-clarridg 0.04386 2 B--weissii 0.00759 5 B--doshiae 0.01285 5 A-tumefaci 0.20155 Data set # 62: Neighbor-joining method Negative branch lengths allowed +B--weissii +--3 +--4 +B-spp-Deer ! ! +--8 +-B-clarridg ! ! ! +B-bacillif ! ! +B-henselae +--9 ! ! ! +-11 +-B-berhoffi ! ! ! ! +--7 ! ! ! ! ! ! +B-arupensi ! ! ! +-12 +--6 ! +-10 ! +B-vinsonii ! ! ! ! ! +B-quintana ! ! ! ! +B-elizabet ! +--5 ! ! +B-grahamii ! +--2 ! +B-birtlesi ! --1B--doshiae ! +----------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 1 9 0.02246 9 8 0.00360 8 4 0.00930 4 3 0.00535 3 B--weissii 0.00516 3 B-spp-Deer 0.01244 4 B-clarridg 0.03510 8 B-bacillif 0.02910 9 10 0.00611 10 11 0.00469 11 B-henselae 0.00876 11 12 0.00166 12 7 0.00669 7 B-berhoffi 0.02622 7 6 0.00623 6 B-arupensi 0.00767 6 B-vinsonii 0.01323 12 B-quintana 0.01511 10 5 0.01294 5 B-elizabet 0.00981 5 2 0.01144 2 B-grahamii 0.00522 2 B-birtlesi 0.01948 1 B--doshiae 0.00511 1 A-tumefaci 0.28339 Data set # 63: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +-B-clarridg ! +--6 ! ! ! +B--weissii ! ! +--3 ! ! +B-spp-Deer ! +-10 ! ! ! +B-quintana ! ! ! +-12 ! ! ! ! +B-henselae ! ! +-11 ! ! ! +B-arupensi ! ! ! +--4 --2--9 +--5 +B-berhoffi ! ! ! ! ! +B-vinsonii ! ! ! ! +B-grahamii ! ! +--1 ! ! +--7 +B-elizabet ! ! ! ! ! +--8 +--B-birtlesi ! ! ! +-B-bacillif ! +---------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 B--doshiae 0.00638 2 9 0.01913 9 10 0.00356 10 6 0.00723 6 B-clarridg 0.04344 6 3 0.00566 3 B--weissii 0.00113 3 B-spp-Deer 0.00897 10 11 0.00392 11 12 0.00226 12 B-quintana 0.01356 12 B-henselae 0.00694 11 5 0.01374 5 4 0.00218 4 B-arupensi 0.00479 4 B-berhoffi 0.01561 5 B-vinsonii 0.01147 9 8 0.00562 8 7 0.00326 7 1 0.02585 1 B-grahamii 0.00328 1 B-elizabet 0.00012 7 B-birtlesi 0.04965 8 B-bacillif 0.02794 2 A-tumefaci 0.26642 Data set # 64: Neighbor-joining method Negative branch lengths allowed +-B-birtlesi ! ! +B--doshiae ! ! ! ! +B-vinsonii --1--5 +--3 ! ! ! +B-arupensi ! ! ! ! ! ! +B-elizabet ! +--6 +--2 ! ! +--4 +B-grahamii ! ! ! ! ! ! ! +B-bacillif ! +--7 ! ! +B-spp-Deer ! ! +--8 ! ! ! +B--weissii ! +-10 ! ! +B-quintana ! +-11 ! ! +B-henselae ! +-12 ! ! +---B-clarridg ! +--9 ! +-B-berhoffi ! +----------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 1 B-birtlesi 0.04100 1 5 0.02943 5 B--doshiae 0.01682 5 6 0.00357 6 3 0.00703 3 B-vinsonii 0.01144 3 B-arupensi 0.00886 6 7 0.00370 7 4 0.00880 4 2 0.01584 2 B-elizabet 0.00575 2 B-grahamii 0.00435 4 B-bacillif 0.01841 7 10 0.01023 10 8 0.00657 8 B-spp-Deer 0.00963 8 B--weissii 0.01087 10 11 0.00118 11 B-quintana 0.01130 11 12 0.00085 12 B-henselae 0.01908 12 9 0.00242 9 B-clarridg 0.06599 9 B-berhoffi 0.03521 1 A-tumefaci 0.28540 Data set # 65: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +--B-berhoffi ! +-12 ! ! ! +B--weissii ! ! +--3 ! ! ! +B-spp-Deer ! +-11 +--1 ! ! ! +-B-clarridg ! ! ! ! ! ! +B-quintana ! ! +--9 ! +-10 +B-henselae ! ! ! ! ! ! +-B-bacillif ! ! ! +--5 ! ! ! ! +--B-birtlesi --2--8 +--6 ! ! ! +B-grahamii ! ! +--4 ! ! +B-elizabet ! ! ! ! +B-vinsonii ! +--7 ! +B-arupensi ! +------------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 B--doshiae 0.00505 2 8 0.01711 8 10 0.00350 10 11 0.00232 11 12 0.00184 12 B-berhoffi 0.04326 12 3 0.01276 3 B--weissii 0.00706 3 1 0.01434 1 B-spp-Deer 0.00795 1 B-clarridg 0.03735 11 9 0.00261 9 B-quintana 0.00921 9 B-henselae 0.01149 10 6 0.01037 6 5 0.00150 5 B-bacillif 0.03977 5 B-birtlesi 0.04653 6 4 0.00832 4 B-grahamii 0.00417 4 B-elizabet 0.00943 8 7 0.00244 7 B-vinsonii 0.00202 7 B-arupensi 0.00478 2 A-tumefaci 0.32335 Data set # 66: Neighbor-joining method Negative branch lengths allowed +B-quintana +-12 ! +B-henselae +-11 ! ! +B-vinsonii ! +-10 ! ! +B-arupensi +--8 +--9 ! ! +--B-berhoffi ! ! ! ! +---B-clarridg ! +--6 ! ! +B-bacillif +--7 +--4 ! ! ! +B--weissii ! ! +--3 ! ! +B-spp-Deer ! ! ! ! +B-grahamii ! ! +--2 ! +--5 +B-elizabet ! ! ! +--B-birtlesi ! --1B--doshiae ! +------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 1 7 0.02984 7 8 0.00374 8 11 0.00415 11 12 0.00039 12 B-quintana 0.00758 12 B-henselae 0.00962 11 10 0.00235 10 B-vinsonii 0.01231 10 9 0.00144 9 B-arupensi 0.00743 9 B-berhoffi 0.04177 8 6 0.01137 6 B-clarridg 0.06684 6 4 0.01531 4 B-bacillif 0.02788 4 3 0.00692 3 B--weissii 0.00206 3 B-spp-Deer 0.01164 7 5 0.01207 5 2 0.01386 2 B-grahamii 0.00287 2 B-elizabet 0.00393 5 B-birtlesi 0.05519 1 B--doshiae 0.00929 1 A-tumefaci 0.22361 Data set # 67: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +B-arupensi ! ! ! ! +B-vinsonii --5--9 ! ! ! ! +-B-berhoffi ! ! ! +--6 ! +-10 +--7 +B-henselae ! ! ! ! ! ! ! +B-quintana ! ! ! ! +-12 +-B-bacillif ! ! ! ! ! +--4 +B-spp-Deer ! ! ! ! +--1 ! ! ! +--2 +B--weissii ! +-11 ! ! ! +-B-clarridg ! ! ! ! +-B-birtlesi ! +--8 ! ! +B-elizabet ! +--3 ! +B-grahamii ! +-------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 5 B--doshiae 0.00603 5 9 0.00368 9 B-arupensi 0.00242 9 10 0.00302 10 B-vinsonii 0.00371 10 12 0.00494 12 7 0.00587 7 6 0.00379 6 B-berhoffi 0.02465 6 B-henselae 0.00955 7 B-quintana 0.01496 12 11 0.00303 11 4 0.01733 4 B-bacillif 0.04008 4 2 0.00997 2 1 0.00754 1 B-spp-Deer 0.00977 1 B--weissii 0.00703 2 B-clarridg 0.04871 11 8 0.00379 8 B-birtlesi 0.03010 8 3 0.01945 3 B-elizabet 0.00726 3 B-grahamii 0.00944 5 A-tumefaci 0.23787 Data set # 68: Neighbor-joining method Negative branch lengths allowed +B-henselae ! ! +B-quintana ! ! ! +-12 +-B-berhoffi +--9 ! ! +--7 ! ! ! +--8 +B-arupensi ! ! ! ! ! ! ! +B-vinsonii ! ! ! ! +-11 +B-spp-Deer ! ! +--2 ! ! +--3 +-B-bacillif ! ! ! ! ! ! +--4 +B--weissii ! ! ! ! ! +-10 +---B-clarridg ! ! ! ! +-B-birtlesi ! +--6 ! ! +B-grahamii ! +--1 ! +B-elizabet ! --5B--doshiae ! +------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 5 9 0.01513 9 B-henselae 0.00877 9 11 0.00271 11 12 0.00133 12 B-quintana 0.01101 12 8 0.00282 8 7 0.00179 7 B-berhoffi 0.02518 7 B-arupensi 0.00962 8 B-vinsonii 0.01546 11 10 0.00199 10 4 0.02179 4 3 0.00249 3 2 0.00477 2 B-spp-Deer 0.01306 2 B-bacillif 0.03214 3 B--weissii 0.01078 4 B-clarridg 0.05851 10 6 0.01407 6 B-birtlesi 0.03364 6 1 0.01671 1 B-grahamii 0.00454 1 B-elizabet 0.00566 5 B--doshiae 0.00838 5 A-tumefaci 0.21142 Data set # 69: Neighbor-joining method Negative branch lengths allowed +B--weissii +--2 +--5 +B-spp-Deer ! ! ! +-B-bacillif +-11 ! ! +B-elizabet ! ! +--1 ! +--4 +B-grahamii +-12 ! ! ! +--B-birtlesi ! ! ! ! +B-henselae ! ! ! ! +-10 +-B-berhoffi +--7 ! +--8 ! ! +--9 +-B-clarridg ! ! ! ! ! +B-quintana ! ! ! ! +B-vinsonii ! +--6 ! +B-arupensi ! --3B--doshiae ! +------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 7 0.01370 7 12 0.00923 12 11 0.00133 11 5 0.01365 5 2 0.00896 2 B--weissii 0.01440 2 B-spp-Deer 0.01750 5 B-bacillif 0.02494 11 4 0.01663 4 1 0.01074 1 B-elizabet 0.01321 1 B-grahamii 0.01489 4 B-birtlesi 0.03651 12 10 0.00422 10 B-henselae 0.00806 10 9 0.00379 9 8 0.00690 8 B-berhoffi 0.02826 8 B-clarridg 0.02274 9 B-quintana 0.02180 7 6 0.00593 6 B-vinsonii 0.00889 6 B-arupensi 0.00851 3 B--doshiae 0.00847 3 A-tumefaci 0.21333 Data set # 70: Neighbor-joining method Negative branch lengths allowed +B-elizabet +--2 ! +B-grahamii ! ! +-B--doshiae +--6 ! ! ! ! +B-quintana ! ! ! +--8 ! ! ! ! ! +B-henselae ! +--9 ! +--7 ! ! +-11 +-B-berhoffi ! ! ! ! ! ! ! ! +B-arupensi ! ! ! +-12 ! +-10 +B-vinsonii ! ! ! ! +B--weissii ! ! +--4 ! ! ! ! +-B-clarridg ! +--5 +--3 ! ! +B-spp-Deer ! ! ! +B-bacillif ! --1-B-birtlesi ! +--------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 1 6 0.02109 6 2 0.00726 2 B-elizabet 0.00581 2 B-grahamii 0.01109 6 9 0.01074 9 B--doshiae 0.02664 9 10 0.00182 10 11 0.00312 11 8 0.00613 8 B-quintana 0.00619 8 7 0.00381 7 B-henselae 0.01699 7 B-berhoffi 0.02861 11 12 0.00087 12 B-arupensi 0.00435 12 B-vinsonii 0.00575 10 5 0.01320 5 4 0.00872 4 B--weissii 0.00402 4 3 0.00293 3 B-clarridg 0.03820 3 B-spp-Deer 0.00320 5 B-bacillif 0.02078 1 B-birtlesi 0.04104 1 A-tumefaci 0.24866 Data set # 71: Neighbor-joining method Negative branch lengths allowed +B-quintana +--8 +--9 +B-berhoffi ! ! ! +B-henselae +-10 ! ! +-B-bacillif ! ! ! ! +--4 +B-spp-Deer ! ! +--1 +-11 +--2 +-B-clarridg ! ! ! ! ! +B--weissii ! ! ! ! +B-elizabet +-12 ! +--5 ! ! +--6 +B-grahamii ! ! ! ! ! +--B-birtlesi ! ! ! ! +B-arupensi ! +--7 ! +B-vinsonii ! --3B--doshiae ! +-----------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 12 0.01528 12 11 0.00191 11 10 0.00416 10 9 0.00817 9 8 0.00169 8 B-quintana 0.00929 8 B-berhoffi 0.02131 9 B-henselae 0.00691 10 4 0.01454 4 B-bacillif 0.03756 4 2 0.00974 2 1 0.00658 1 B-spp-Deer 0.02138 1 B-clarridg 0.03022 2 B--weissii 0.01087 11 6 0.00738 6 5 0.00808 5 B-elizabet 0.00896 5 B-grahamii 0.00444 6 B-birtlesi 0.04882 12 7 0.00642 7 B-arupensi 0.00209 7 B-vinsonii 0.00131 3 B--doshiae 0.00978 3 A-tumefaci 0.20362 Data set # 72: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +B-arupensi ! ! ! ! +--B-bacillif ! ! ! ! ! +--4 +B-elizabet ! ! ! ! +--1 --2--6 ! +--3 +B-grahamii ! ! ! ! ! ! +--8 +--B-birtlesi ! ! ! ! ! ! ! ! +B-spp-Deer ! ! ! ! +--5 ! +-11 +--7 +B--weissii ! ! ! ! ! +--B-clarridg ! ! ! ! +B-vinsonii ! +-12 ! ! +B-quintana ! +-10 ! ! +B-berhoffi ! +--9 ! +B-henselae ! +-------------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 B--doshiae -0.00100 2 6 0.01600 6 B-arupensi 0.00605 6 11 0.00620 11 8 0.00501 8 4 0.01248 4 B-bacillif 0.04019 4 3 0.00611 3 1 0.01208 1 B-elizabet 0.00565 1 B-grahamii 0.00795 3 B-birtlesi 0.05742 8 7 0.00379 7 5 0.00735 5 B-spp-Deer 0.01557 5 B--weissii 0.00143 7 B-clarridg 0.05295 11 12 0.00170 12 B-vinsonii 0.00406 12 10 0.00272 10 B-quintana 0.02075 10 9 0.00345 9 B-berhoffi 0.01382 9 B-henselae 0.00328 2 A-tumefaci 0.33010 Data set # 73: Neighbor-joining method Negative branch lengths allowed +B-arupensi +--6 ! +B-vinsonii ! ! +-B-berhoffi +--8 +-11 ! ! ! ! +B-quintana ! ! ! +-12 ! ! ! +B-henselae ! ! ! ! +-10 +--B-bacillif ! ! ! ! ! +--3 +B-spp-Deer ! ! ! ! +--1 ! ! ! +--2 +B--weissii ! ! ! ! ! +--9 +--B-clarridg ! ! ! ! +B-grahamii ! ! +--4 ! +--7 +B-elizabet ! ! ! +--B-birtlesi ! --5B--doshiae ! +-----------------A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 5 8 0.01469 8 6 0.01211 6 B-arupensi 0.01512 6 B-vinsonii 0.01588 8 10 0.00858 10 11 0.00705 11 B-berhoffi 0.03192 11 12 0.00178 12 B-quintana 0.00982 12 B-henselae 0.01108 10 9 0.00297 9 3 0.02854 3 B-bacillif 0.03996 3 2 0.01009 2 1 0.00993 1 B-spp-Deer 0.01307 1 B--weissii 0.00763 2 B-clarridg 0.05542 9 7 0.01231 7 4 0.01221 4 B-grahamii 0.00607 4 B-elizabet 0.00753 7 B-birtlesi 0.04174 5 B--doshiae 0.02212 5 A-tumefaci 0.30088 Data set # 74: Neighbor-joining method Negative branch lengths allowed +B--doshiae ! ! +B-quintana ! +--9 ! ! +B-henselae ! ! ! ! +B-berhoffi ! +-10 +--8 ! ! ! +-12 +B--weissii ! ! ! ! ! ! ! ! ! +--B-clarridg ! ! ! ! ! ! +-11 +---B-birtlesi