Nucleic acid sequence Maximum Likelihood method, version 3.573c



Empirical Base Frequencies:

   A       0.28306
   C       0.21990
   G       0.30837
  T(U)     0.18867

Transition/transversion ratio =   2.000000

(Transition/transversion parameter =   1.422959)


  +B--doshiae
  !  
  !     +B--weissii
  !     !  
  !  +--6     +--B-clarridg
  !  !  !  +-12  
  !  !  +--9  +B-spp-Deer
  !  !     !  
  !  !     +--B-bacillif
  !  !  
--1--7        +-B-berhoffi
  !  !     +--3  
  !  !  +-10  +B-quintana
  !  !  !  !  
  !  !  !  +B-henselae
  !  !  !  
  !  +-11        +B-grahamii
  !     !     +--8  
  !     !  +--5  +B-elizabet
  !     !  !  !  
  !     +--2  +--B-birtlesi
  !        !  
  !        !  +B-arupensi
  !        +--4  
  !           +B-vinsonii
  !  
  +---------------A-tumefaci


remember: (although rooted by outgroup) this is an unrooted tree!

Ln Likelihood = -1237.18634

Examined 2502 trees

 Between        And            Length      Approx. Confidence Limits
 -------        ---            ------      ------- ---------- ------

   1          B--doshiae        0.00003     (     zero,     0.01314)
   1             7              0.02843     (  0.00857,     0.04864) **
   7             6              0.02082     (  0.00402,     0.03778) **
   6          B--weissii        0.00360     (     zero,     0.01081) *
   6             9              0.00653     (     zero,     0.01725) *
   9            12              0.00662     (     zero,     0.01661) **
  12          B-clarridg        0.05486     (  0.02746,     0.08293) **
  12          B-spp-Deer        0.00443     (     zero,     0.01315) *
   9          B-bacillif        0.04543     (  0.02038,     0.07072) **
   7            11              0.01038     (     zero,     0.02269) **
  11            10              0.00006     (     zero,     0.00909)
  10             3              0.00338     (     zero,     0.01016) *
   3          B-berhoffi        0.03454     (  0.01310,     0.05623) **
   3          B-quintana        0.01029     (     zero,     0.02197) **
  10          B-henselae        0.01037     (     zero,     0.02212) **
  11             2              0.00439     (     zero,     0.01325) *
   2             5              0.02176     (  0.00315,     0.04034) **
   5             8              0.01682     (  0.00044,     0.03324) **
   8          B-grahamii        0.00003     (     zero,     0.00935)
   8          B-elizabet        0.01694     (  0.00209,     0.03186) **
   5          B-birtlesi        0.05120     (  0.02379,     0.07866) **
   2             4              0.00981     (     zero,     0.02162) **
   4          B-arupensi        0.00962     (     zero,     0.02125) **
   4          B-vinsonii        0.00741     (     zero,     0.01770) **
   1          A-tumefaci        0.27270     (  0.20154,     0.34736) **

     *  = significantly positive, P < 0.05
     ** = significantly positive, P < 0.01