14 Populations Neighbor-Joining/UPGMA method version 3.573c Data set # 1: Neighbor-joining method Negative branch lengths allowed +B-bacillif ! ! +B-quintana +--5 ! ! ! ! +B-birtlesi ! ! ! ! ! ! ! ! +B-henselae ! +--6 +-11 +--9 ! ! ! ! +-10 +B-vinsonii ! ! ! ! ! ! ! ! ! +-12 +B--doshiae ! ! ! ! +--4 +--8 ! +B-elizabet ! ! ! +--3 ! ! ! +B-grahamii ! ! ! ! ! ! +B-berhoffi ! ! +--7 ! ! +B-arupensi ! ! ! ! +B--weissii ! +--1 ! +B-spp-Deer ! --2B-clarridg ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 4 0.00348 4 5 0.00066 5 B-bacillif 0.00726 5 6 0.00075 6 B-quintana 0.01119 6 8 0.00115 8 11 0.00203 11 B-birtlesi 0.00272 11 12 0.00022 12 10 0.00082 10 9 0.00061 9 B-henselae 0.00277 9 B-vinsonii 0.00013 10 B--doshiae 0.00014 12 3 0.00287 3 B-elizabet 0.00620 3 B-grahamii 0.00040 8 7 0.00092 7 B-berhoffi 0.00239 7 B-arupensi 0.00131 4 1 0.00632 1 B--weissii 0.00000 1 B-spp-Deer 0.00000 2 B-clarridg 0.01230 2 A-tumefaci 0.05330 Data set # 2: Neighbor-joining method Negative branch lengths allowed +B-elizabet ! ! +B-quintana +--5 +--7 ! ! ! +B-henselae ! ! ! ! +--8 +B-berhoffi ! ! +--6 ! ! ! +B-arupensi ! +--9 ! ! +B--doshiae +--4 +-10 ! ! ! +B-vinsonii ! ! +-11 ! ! ! +B-grahamii ! ! +-12 ! ! +B-birtlesi ! ! ! ! +B-bacillif ! +--2 ! ! +B-spp-Deer ! +--1 ! +B--weissii ! --3B-clarridg ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 4 0.00207 4 5 0.00144 5 B-elizabet 0.00565 5 8 0.00136 8 7 0.00053 7 B-quintana 0.00926 7 B-henselae 0.00694 8 9 0.00030 9 6 0.00122 6 B-berhoffi 0.00089 6 B-arupensi 0.00351 9 10 0.00147 10 B--doshiae 0.00132 10 11 0.00011 11 B-vinsonii 0.00138 11 12 0.00007 12 B-grahamii 0.00143 12 B-birtlesi 0.00147 4 2 0.00483 2 B-bacillif 0.01190 2 1 0.00890 1 B-spp-Deer 0.00095 1 B--weissii 0.00125 3 B-clarridg 0.01120 3 A-tumefaci 0.05880 Data set # 3: Neighbor-joining method Negative branch lengths allowed +B-bacillif +--3 ! ! +B-spp-Deer ! +--1 ! +B--weissii ! +--4 +B-elizabet ! ! ! ! ! ! +B-arupensi ! ! ! +--6 ! ! ! ! +B-berhoffi ! +--5 +--8 ! ! ! ! +B-henselae ! ! ! ! ! ! ! ! +--9 +B-vinsonii ! ! ! ! ! ! +--7 +-10 +B-birtlesi ! ! ! +-11 ! ! +-12 +B--doshiae ! ! ! ! ! +B-grahamii ! ! ! +B-quintana ! --2B-clarridg ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 4 0.00454 4 3 0.00218 3 B-bacillif 0.01030 3 1 0.00670 1 B-spp-Deer 0.00292 1 B--weissii 0.00148 4 5 0.00216 5 B-elizabet 0.00729 5 7 0.00188 7 8 0.00027 8 6 0.00160 6 B-arupensi 0.00056 6 B-berhoffi 0.00234 8 9 0.00126 9 B-henselae 0.00540 9 10 0.00115 10 B-vinsonii 0.00140 10 12 0.00078 12 11 0.00005 11 B-birtlesi 0.00287 11 B--doshiae 0.00003 12 B-grahamii 0.00065 7 B-quintana 0.01033 2 B-clarridg 0.01116 2 A-tumefaci 0.06974 Data set # 4: Neighbor-joining method Negative branch lengths allowed +B-clarridg ! ! +B--weissii ! +--1 ! +--2 +B-spp-Deer ! ! ! ! ! +B-bacillif ! ! ! ! +B-henselae ! ! ! --3--4 ! +B-berhoffi ! ! +--7 +--6 ! ! ! ! ! +B-arupensi ! ! ! ! ! ! ! ! +--9 +B-vinsonii ! ! ! ! +-10 ! ! ! ! ! +B--doshiae ! +--5 +-11 ! ! ! +B-elizabet ! ! ! +--8 ! ! +-12 +B-grahamii ! ! ! ! ! +B-birtlesi ! ! ! +B-quintana ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 B-clarridg 0.01135 3 4 0.00143 4 2 0.00294 2 1 0.00471 1 B--weissii 0.00065 1 B-spp-Deer 0.00085 2 B-bacillif 0.01084 4 5 0.00139 5 7 0.00264 7 B-henselae 0.00656 7 9 0.00157 9 6 0.00168 6 B-berhoffi 0.00194 6 B-arupensi 0.00246 9 11 0.00051 11 10 0.00043 10 B-vinsonii 0.00192 10 B--doshiae 0.00028 11 12 0.00032 12 8 0.00097 8 B-elizabet 0.00909 8 B-grahamii 0.00051 12 B-birtlesi 0.00378 5 B-quintana 0.01265 3 A-tumefaci 0.05835 Data set # 5: Neighbor-joining method Negative branch lengths allowed +B-elizabet ! ! +B-vinsonii ! +-10 ! ! ! +B-grahamii ! ! +-11 ! ! ! +B-birtlesi ! ! +-12 ! ! +B--doshiae +--6 +--9 ! ! ! ! +B--weissii ! ! ! ! +--1 ! ! ! ! ! +B-spp-Deer ! ! ! ! +--4 ! ! +--8 ! ! ! +B-quintana ! ! ! ! +--5 +--3 ! ! ! ! ! +B-bacillif ! ! ! ! ! ! +--7 ! +B-henselae ! ! ! ! ! +B-arupensi ! ! ! +B-berhoffi ! --2B-clarridg ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 6 0.00424 6 B-elizabet 0.00916 6 7 0.00115 7 8 0.00074 8 9 0.00051 9 10 0.00048 10 B-vinsonii 0.00120 10 11 0.00024 11 B-grahamii 0.00141 11 12 0.00009 12 B-birtlesi 0.00282 12 B--doshiae 0.00008 9 5 0.00224 5 4 0.00081 4 1 0.00634 1 B--weissii 0.00087 1 B-spp-Deer 0.00133 4 3 0.00289 3 B-quintana 0.00591 3 B-bacillif 0.01179 5 B-henselae 0.00485 8 B-arupensi 0.00267 7 B-berhoffi 0.00202 2 B-clarridg 0.00906 2 A-tumefaci 0.07004 Data set # 6: Neighbor-joining method Negative branch lengths allowed +B-quintana ! ! +B-berhoffi +--7 +--6 ! ! ! +B-arupensi ! ! ! ! +--8 +B-vinsonii ! ! +--9 ! ! ! +B-henselae ! +-10 ! ! +B--doshiae +--5 +-11 ! ! ! +B-birtlesi ! ! +-12 ! ! +B-grahamii ! ! ! ! +B-clarridg ! ! +--2 ! ! ! ! +B-spp-Deer ! +--4 +--1 ! ! +B--weissii ! ! ! +B-bacillif ! --3B-elizabet ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 5 0.00157 5 7 0.00255 7 B-quintana 0.01091 7 8 0.00073 8 6 0.00111 6 B-berhoffi 0.00257 6 B-arupensi 0.00483 8 10 0.00072 10 9 0.00064 9 B-vinsonii 0.00209 9 B-henselae 0.00591 10 11 0.00041 11 B--doshiae 0.00088 11 12 0.00022 12 B-birtlesi 0.00188 12 B-grahamii 0.00102 5 4 0.00059 4 2 0.00190 2 B-clarridg 0.01014 2 1 0.00611 1 B-spp-Deer 0.00193 1 B--weissii 0.00097 4 B-bacillif 0.00777 3 B-elizabet 0.00674 3 A-tumefaci 0.04716 Data set # 7: Neighbor-joining method Negative branch lengths allowed +B--weissii +--1 ! +B-spp-Deer +--3 ! ! +B-bacillif ! ! ! ! +--4 +B-quintana ! ! ! ! +--6 +B-berhoffi ! ! +--5 ! ! ! +B-arupensi ! +--7 ! ! +B-elizabet ! ! ! ! +--9 +B-henselae ! ! +--8 ! ! ! +B-vinsonii ! +-10 ! ! +B--doshiae ! ! +-11 ! +-12 +B-birtlesi ! ! ! +B-grahamii ! --2B-clarridg ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 3 0.00301 3 1 0.00814 1 B--weissii 0.00112 1 B-spp-Deer 0.00258 3 4 0.00042 4 B-bacillif 0.00836 4 6 0.00290 6 B-quintana 0.00978 6 7 0.00052 7 5 0.00154 5 B-berhoffi 0.00128 5 B-arupensi 0.00092 7 9 0.00109 9 B-elizabet 0.00775 9 10 0.00069 10 8 0.00091 8 B-henselae 0.00458 8 B-vinsonii 0.00202 10 12 0.00033 12 11 0.00027 11 B--doshiae 0.00033 11 B-birtlesi 0.00187 12 B-grahamii 0.00083 2 B-clarridg 0.00746 2 A-tumefaci 0.06454 Data set # 8: Neighbor-joining method Negative branch lengths allowed +B-berhoffi ! ! +B-elizabet ! ! +--6 ! +B-vinsonii ! ! ! +-10 ! ! ! ! +B-arupensi ! ! ! ! ! +--7 ! +B-bacillif ! ! +-12 +--2 ! ! ! ! ! ! +B-spp-Deer ! ! ! ! +--4 +--1 ! ! ! ! ! ! +B--weissii ! ! ! +--5 ! ! +-11 ! +B-quintana ! ! ! ! ! +B-henselae ! ! ! ! +B-birtlesi ! ! +--8 ! +--9 +B--doshiae ! ! ! +B-grahamii ! --3B-clarridg ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 6 0.00374 6 B-berhoffi 0.00196 6 7 0.00045 7 B-elizabet 0.00820 7 11 0.00117 11 12 0.00044 12 10 0.00051 10 B-vinsonii 0.00247 10 B-arupensi 0.00263 12 5 0.00188 5 4 0.00182 4 2 0.00309 2 B-bacillif 0.00641 2 1 0.00394 1 B-spp-Deer 0.00232 1 B--weissii 0.00058 4 B-quintana 0.01403 5 B-henselae 0.00321 11 9 0.00088 9 8 0.00024 8 B-birtlesi 0.00070 8 B--doshiae 0.00000 9 B-grahamii 0.00126 3 B-clarridg 0.00999 3 A-tumefaci 0.06341 Data set # 9: Neighbor-joining method Negative branch lengths allowed +B-bacillif ! ! +B-spp-Deer +--3 +--1 ! ! ! +B--weissii ! ! ! ! +--4 +B-elizabet ! ! ! ! ! ! +B-quintana ! +--5 +-12 ! ! ! ! +B-arupensi ! ! ! +-10 ! ! ! +B-berhoffi ! +-11 ! ! +B-grahamii ! ! +--8 ! ! ! +B-birtlesi ! +--9 ! ! +B-vinsonii ! +--7 ! ! +B--doshiae ! +--6 ! +B-henselae ! --2B-clarridg ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 3 0.00391 3 B-bacillif 0.00984 3 4 0.00079 4 1 0.00953 1 B-spp-Deer 0.00332 1 B--weissii 0.00028 4 5 0.00214 5 B-elizabet 0.01017 5 11 0.00201 11 12 0.00036 12 B-quintana 0.00914 12 10 0.00106 10 B-arupensi 0.00234 10 B-berhoffi 0.00136 11 9 0.00119 9 8 0.00063 8 B-grahamii 0.00087 8 B-birtlesi 0.00273 9 7 0.00121 7 B-vinsonii 0.00184 7 6 0.00111 6 B--doshiae 0.00044 6 B-henselae 0.00316 2 B-clarridg 0.01281 2 A-tumefaci 0.05609 Data set # 10: Neighbor-joining method Negative branch lengths allowed +B-spp-Deer +--1 +--2 +B--weissii ! ! ! +B-bacillif ! ! +B-clarridg ! +--4 ! ! +B-quintana ! ! --3--6 +B-arupensi ! ! +--5 ! ! ! +B-berhoffi ! +--7 ! ! +B-henselae ! ! ! ! +--9 +B-grahamii ! ! +--8 ! ! ! +B-elizabet ! +-10 ! ! +B-birtlesi ! ! +-11 ! +-12 +B--doshiae ! ! ! +B-vinsonii ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 2 0.00140 2 1 0.01145 1 B-spp-Deer 0.00080 1 B--weissii 0.00140 2 B-bacillif 0.00785 3 6 0.00282 6 4 0.00144 4 B-clarridg 0.00656 4 B-quintana 0.00594 6 7 0.00065 7 5 0.00114 5 B-arupensi 0.00292 5 B-berhoffi 0.00148 7 9 0.00210 9 B-henselae 0.00696 9 10 0.00051 10 8 0.00097 8 B-grahamii 0.00088 8 B-elizabet 0.00502 10 12 0.00037 12 11 0.00033 11 B-birtlesi 0.00158 11 B--doshiae 0.00062 12 B-vinsonii 0.00187 3 A-tumefaci 0.05975 Data set # 11: Neighbor-joining method Negative branch lengths allowed +B-quintana ! +--5 +B-berhoffi ! ! +--6 ! ! ! +B-arupensi ! +--7 ! ! +B-elizabet ! ! ! ! +--8 +B-henselae ! ! ! ! +--9 +B-vinsonii +--4 ! ! ! ! +-10 +B--doshiae ! ! ! +-11 ! ! +-12 +B-birtlesi ! ! ! ! ! +B-grahamii ! ! ! ! +B--weissii ! ! +--1 ! +--2 +B-spp-Deer ! ! ! +B-bacillif ! --3B-clarridg ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 4 0.00139 4 5 0.00367 5 B-quintana 0.00931 5 7 0.00238 7 6 0.00086 6 B-berhoffi 0.00179 6 B-arupensi 0.00631 7 8 0.00156 8 B-elizabet 0.00909 8 9 0.00074 9 B-henselae 0.00509 9 10 0.00125 10 B-vinsonii 0.00249 10 12 0.00034 12 11 0.00033 11 B--doshiae -0.00002 11 B-birtlesi 0.00072 12 B-grahamii 0.00117 4 2 0.00292 2 1 0.00778 1 B--weissii 0.00134 1 B-spp-Deer 0.00306 2 B-bacillif 0.01152 3 B-clarridg 0.01353 3 A-tumefaci 0.06017 Data set # 12: Neighbor-joining method Negative branch lengths allowed +B-spp-Deer +--1 ! +B--weissii ! ! +B-clarridg ! ! --2--3 +B-bacillif ! ! ! ! +--4 +B-elizabet ! ! ! ! +--5 +B-quintana ! ! ! ! ! ! +B-arupensi ! +--8 +--6 ! ! ! +B-berhoffi ! ! ! ! +-10 +B-birtlesi ! ! ! ! ! ! +B-vinsonii ! +-11 +--7 ! ! +--9 +B-henselae ! ! ! ! ! +-12 +B--doshiae ! ! ! +B-grahamii ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 1 0.00569 1 B-spp-Deer 0.00100 1 B--weissii 0.00050 2 3 0.00267 3 B-clarridg 0.00833 3 4 0.00033 4 B-bacillif 0.00754 4 5 0.00073 5 B-elizabet 0.00999 5 8 0.00178 8 B-quintana 0.00862 8 10 0.00079 10 6 0.00136 6 B-arupensi 0.00158 6 B-berhoffi 0.00132 10 11 0.00018 11 B-birtlesi 0.00086 11 12 0.00004 12 9 0.00022 9 7 0.00085 7 B-vinsonii 0.00125 7 B-henselae 0.00315 9 B--doshiae 0.00060 12 B-grahamii 0.00198 2 A-tumefaci 0.05451 Data set # 13: Neighbor-joining method Negative branch lengths allowed +B-quintana ! ! +B-vinsonii +--5 ! ! ! ! +B-berhoffi ! ! ! +--6 ! +-10 +--7 +B-elizabet ! ! ! ! ! ! +--9 +B-grahamii ! ! ! ! ! ! ! ! +B--doshiae +--4 +-11 +--8 ! ! ! +B-birtlesi ! ! ! ! ! ! +B-henselae ! ! +-12 ! ! +B-arupensi ! ! ! ! +B-spp-Deer ! ! +--1 ! +--3 +B--weissii ! ! ! +B-bacillif ! --2B-clarridg ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 4 0.00236 4 5 0.00196 5 B-quintana 0.01049 5 10 0.00179 10 B-vinsonii 0.00299 10 11 0.00040 11 9 0.00063 9 7 0.00079 7 6 0.00087 6 B-berhoffi 0.00201 6 B-elizabet 0.00609 7 B-grahamii 0.00128 9 8 0.00033 8 B--doshiae 0.00061 8 B-birtlesi 0.00309 11 12 0.00027 12 B-henselae 0.00319 12 B-arupensi 0.00491 4 3 0.00049 3 1 0.00608 1 B-spp-Deer 0.00077 1 B--weissii 0.00073 3 B-bacillif 0.00872 2 B-clarridg 0.01065 2 A-tumefaci 0.06405 Data set # 14: Neighbor-joining method Negative branch lengths allowed +B-clarridg ! ! +B-bacillif ! ! ! ! +B-spp-Deer --2--3 +--1 ! ! ! +B--weissii ! ! ! ! ! ! +B-quintana ! +--4 ! ! ! ! +B-grahamii ! ! ! +--5 ! ! ! ! +B-elizabet ! +--9 +-11 ! ! ! ! +B-henselae ! ! ! ! +--6 ! ! +-12 +--7 +B--doshiae ! ! ! ! ! ! ! ! ! +B-vinsonii ! +-10 ! ! ! +B-birtlesi ! ! ! ! +B-berhoffi ! +--8 ! +B-arupensi ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 B-clarridg 0.00550 2 3 0.00295 3 B-bacillif 0.00990 3 4 0.00212 4 1 0.00821 1 B-spp-Deer 0.00044 1 B--weissii 0.00106 4 9 0.00173 9 B-quintana 0.00788 9 10 0.00078 10 12 0.00141 12 11 0.00024 11 5 0.00195 5 B-grahamii 0.00078 5 B-elizabet 0.00502 11 7 0.00154 7 6 0.00073 6 B-henselae 0.00308 6 B--doshiae 0.00052 7 B-vinsonii 0.00147 12 B-birtlesi 0.00515 10 8 0.00134 8 B-berhoffi 0.00272 8 B-arupensi 0.00388 2 A-tumefaci 0.05730 Data set # 15: Neighbor-joining method Negative branch lengths allowed +B-clarridg ! ! +B--weissii ! +--1 ! ! +B-spp-Deer ! ! --2--3 +B-bacillif ! ! ! ! ! ! +B-quintana ! +--5 ! ! ! ! +B-elizabet ! ! ! ! ! +--6 +--8 +B-grahamii ! ! ! ! +--9 ! ! ! ! ! +B-henselae ! ! ! +-10 ! ! ! ! +B-vinsonii ! +--7 +-11 ! ! ! +B--doshiae ! ! +-12 ! ! +B-birtlesi ! ! ! ! +B-arupensi ! +--4 ! +B-berhoffi ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 B-clarridg 0.00891 2 3 0.00229 3 1 0.00546 1 B--weissii 0.00151 1 B-spp-Deer 0.00139 3 5 0.00169 5 B-bacillif 0.00611 5 6 0.00072 6 B-quintana 0.00948 6 7 0.00109 7 8 0.00139 8 B-elizabet 0.00764 8 10 0.00077 10 9 0.00026 9 B-grahamii 0.00128 9 B-henselae 0.00312 10 11 0.00064 11 B-vinsonii 0.00130 11 12 0.00015 12 B--doshiae 0.00063 12 B-birtlesi 0.00157 7 4 0.00154 4 B-arupensi 0.00272 4 B-berhoffi 0.00238 2 A-tumefaci 0.05519 Data set # 16: Neighbor-joining method Negative branch lengths allowed +B-clarridg ! ! +B-elizabet ! ! ! ! +B-henselae ! ! +--6 ! ! ! +B-quintana ! ! ! --2--4 ! +B-vinsonii ! ! +--8 +-12 ! ! ! ! ! ! +B--doshiae ! ! ! ! ! +-11 ! ! ! ! ! ! +B-birtlesi ! ! ! +--9 +-10 ! ! ! ! +B-grahamii ! +--5 ! ! ! ! +B-arupensi ! ! +--7 ! ! +B-berhoffi ! ! ! ! +B--weissii ! ! +--1 ! +--3 +B-spp-Deer ! ! ! +B-bacillif ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 B-clarridg 0.00787 2 4 0.00468 4 B-elizabet 0.00757 4 5 0.00058 5 8 0.00147 8 6 0.00080 6 B-henselae 0.00261 6 B-quintana 0.00619 8 9 0.00046 9 12 0.00125 12 B-vinsonii 0.00064 12 11 0.00011 11 B--doshiae 0.00069 11 10 0.00041 10 B-birtlesi 0.00053 10 B-grahamii 0.00167 9 7 0.00079 7 B-arupensi 0.00287 7 B-berhoffi 0.00223 5 3 0.00307 3 1 0.00530 1 B--weissii 0.00088 1 B-spp-Deer 0.00132 3 B-bacillif 0.00505 2 A-tumefaci 0.05083 Data set # 17: Neighbor-joining method Negative branch lengths allowed +B-clarridg ! ! +B-arupensi ! ! ! +--5 +B-quintana ! ! ! ! ! ! ! ! +B--weissii ! ! +--6 +--1 ! ! ! +--4 +B-spp-Deer ! ! ! ! ! ! ! ! ! +B-bacillif ! ! +--7 ! ! ! +B-henselae ! ! ! ! --2--3 +--8 +B-vinsonii ! ! ! ! ! ! +--9 +B--doshiae ! ! ! +-11 ! ! ! ! +B-birtlesi ! ! +-12 ! ! ! +B-grahamii ! ! +-10 ! ! +B-elizabet ! ! ! +B-berhoffi ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 B-clarridg 0.01115 2 3 0.00118 3 5 0.00093 5 B-arupensi 0.00187 5 6 0.00140 6 B-quintana 0.00526 6 7 0.00066 7 4 0.00216 4 1 0.00440 1 B--weissii 0.00089 1 B-spp-Deer 0.00061 4 B-bacillif 0.00365 7 8 0.00295 8 B-henselae 0.00403 8 9 0.00145 9 B-vinsonii 0.00206 9 12 0.00086 12 11 0.00039 11 B--doshiae -0.00003 11 B-birtlesi 0.00003 12 10 0.00071 10 B-grahamii 0.00053 10 B-elizabet 0.00757 3 B-berhoffi 0.00251 2 A-tumefaci 0.05715 Data set # 18: Neighbor-joining method Negative branch lengths allowed +B-bacillif ! ! +B-berhoffi ! +--6 ! ! +B-arupensi ! ! ! ! +B-spp-Deer ! ! +--1 ! +--8 +--2 +B--weissii ! ! ! ! ! ! ! ! +--4 +B-clarridg ! ! ! ! ! ! ! ! +--5 +B-quintana ! ! ! ! ! ! ! +--9 +B-vinsonii ! ! ! --3--7 ! +B-henselae ! ! +-10 ! ! ! +B--doshiae ! ! +-11 ! ! ! +B-birtlesi ! ! +-12 ! ! +B-grahamii ! ! ! +B-elizabet ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 B-bacillif 0.00747 3 7 0.00267 7 8 0.00115 8 6 0.00124 6 B-berhoffi 0.00206 6 B-arupensi 0.00304 8 9 0.00038 9 5 0.00228 5 4 0.00141 4 2 0.00229 2 1 0.00626 1 B-spp-Deer 0.00265 1 B--weissii 0.00095 2 B-clarridg 0.00769 4 B-quintana 0.00576 5 B-vinsonii 0.00263 9 10 0.00089 10 B-henselae 0.00278 10 11 0.00052 11 B--doshiae 0.00049 11 12 0.00026 12 B-birtlesi 0.00020 12 B-grahamii 0.00050 7 B-elizabet 0.00458 3 A-tumefaci 0.05823 Data set # 19: Neighbor-joining method Negative branch lengths allowed +B-bacillif +--2 ! ! +B-spp-Deer ! +--1 ! +B--weissii +--4 ! ! +B-quintana ! ! ! ! ! ! +B-henselae ! ! ! +--8 ! +--5 ! ! +B-elizabet ! ! ! +--9 ! ! ! ! +B-grahamii ! ! ! +-10 ! ! ! ! +B--doshiae ! +--7 +-11 ! ! ! +B-birtlesi ! ! +-12 ! ! +B-vinsonii ! ! ! ! +B-berhoffi ! +--6 ! +B-arupensi ! --3B-clarridg ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 4 0.00223 4 2 0.00228 2 B-bacillif 0.01423 2 1 0.01117 1 B-spp-Deer 0.00362 1 B--weissii 0.00078 4 5 0.00103 5 B-quintana 0.00851 5 7 0.00250 7 8 0.00181 8 B-henselae 0.00359 8 9 0.00110 9 B-elizabet 0.01006 9 10 0.00127 10 B-grahamii 0.00061 10 11 0.00012 11 B--doshiae 0.00068 11 12 0.00007 12 B-birtlesi 0.00082 12 B-vinsonii 0.00138 7 6 0.00221 6 B-berhoffi 0.00227 6 B-arupensi 0.00143 3 B-clarridg 0.00968 3 A-tumefaci 0.05532 Data set # 20: Neighbor-joining method Negative branch lengths allowed +B-arupensi +--7 ! +B-berhoffi ! +--8 +B-elizabet ! ! ! ! ! ! +B-birtlesi ! +--9 +-10 ! ! +-11 +B-vinsonii ! ! ! ! ! +-12 +B-grahamii +--5 ! ! ! ! +B--doshiae ! ! +--6 ! ! +B-henselae ! ! ! ! +B--weissii ! ! +--1 ! ! ! +B-spp-Deer ! +--4 ! ! +B-quintana ! +--3 ! +B-clarridg ! --2B-bacillif ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 5 0.00272 5 8 0.00151 8 7 0.00060 7 B-arupensi 0.00532 7 B-berhoffi 0.00208 8 9 0.00148 9 B-elizabet 0.00756 9 12 0.00097 12 11 0.00015 11 10 0.00019 10 B-birtlesi 0.00273 10 B-vinsonii 0.00237 11 B-grahamii 0.00096 12 6 0.00185 6 B--doshiae 0.00065 6 B-henselae 0.00445 5 4 0.00098 4 1 0.00874 1 B--weissii 0.00085 1 B-spp-Deer 0.00135 4 3 0.00089 3 B-quintana 0.01134 3 B-clarridg 0.01236 2 B-bacillif 0.00727 2 A-tumefaci 0.06303 Data set # 21: Neighbor-joining method Negative branch lengths allowed +B-clarridg ! ! +B-quintana ! ! ! ! +B-berhoffi ! +--6 +--7 ! ! ! ! +B-arupensi ! ! ! ! ! ! +--8 +B--doshiae ! ! ! +--9 ! ! ! +-10 +B-henselae ! ! ! ! ! ! ! +-11 +B-vinsonii --2--5 ! ! ! ! +B-birtlesi ! ! +-12 ! ! ! +B-grahamii ! ! +--4 ! ! +B-elizabet ! ! ! ! +B--weissii ! ! +--1 ! +--3 +B-spp-Deer ! ! ! +B-bacillif ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 B-clarridg 0.01089 2 5 0.00522 5 6 0.00090 6 B-quintana 0.00868 6 8 0.00135 8 7 0.00074 7 B-berhoffi 0.00186 7 B-arupensi 0.00404 8 11 0.00147 11 10 0.00068 10 9 0.00054 9 B--doshiae 0.00031 9 B-henselae 0.00559 10 B-vinsonii 0.00241 11 12 0.00043 12 B-birtlesi 0.00229 12 4 0.00211 4 B-grahamii 0.00041 4 B-elizabet 0.00329 5 3 0.00235 3 1 0.00574 1 B--weissii 0.00032 1 B-spp-Deer 0.00338 3 B-bacillif 0.00761 2 A-tumefaci 0.05451 Data set # 22: Neighbor-joining method Negative branch lengths allowed +B-bacillif ! ! +B-spp-Deer ! +--1 ! +--3 +B--weissii ! ! ! ! +--5 +B-henselae +--4 ! ! ! ! ! +B-vinsonii ! ! +--9 ! ! ! ! +B-berhoffi ! ! ! ! +--7 ! ! ! ! ! +B-elizabet ! ! ! +-10 ! ! ! ! +B-grahamii ! +--8 +-12 ! ! ! +B-birtlesi ! ! +-11 ! ! +B--doshiae ! ! ! ! +B-arupensi ! +--6 ! +B-quintana ! --2B-clarridg ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 4 0.00377 4 B-bacillif 0.00953 4 8 0.00271 8 9 0.00040 9 5 0.00149 5 3 0.00228 3 1 0.00572 1 B-spp-Deer 0.00036 1 B--weissii 0.00034 3 B-henselae 0.00448 5 B-vinsonii 0.00247 9 10 0.00126 10 7 0.00132 7 B-berhoffi 0.00252 7 B-elizabet 0.00628 10 12 0.00071 12 B-grahamii 0.00098 12 11 0.00047 11 B-birtlesi 0.00085 11 B--doshiae 0.00065 8 6 0.00076 6 B-arupensi 0.00302 6 B-quintana 0.00878 2 B-clarridg 0.00947 2 A-tumefaci 0.07403 Data set # 23: Neighbor-joining method Negative branch lengths allowed +B-clarridg ! ! +B-quintana ! +--3 ! ! ! +B-spp-Deer ! ! +--1 ! ! +B--weissii ! +--5 ! ! ! +B-henselae ! ! ! ! ! ! ! ! +B-elizabet ! ! +--7 +--8 ! ! ! ! ! +B-arupensi ! ! ! ! +--6 ! ! ! ! +B-berhoffi --2--4 +--9 ! ! ! +B-birtlesi ! ! ! +-10 ! ! ! +-11 +B-grahamii ! ! ! ! ! ! ! +-12 +B--doshiae ! ! ! ! ! +B-vinsonii ! ! ! +B-bacillif ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 B-clarridg 0.01121 2 4 0.00205 4 5 0.00074 5 3 0.00111 3 B-quintana 0.00693 3 1 0.00557 1 B-spp-Deer 0.00120 1 B--weissii 0.00100 5 7 0.00193 7 B-henselae 0.00557 7 9 0.00134 9 8 0.00082 8 B-elizabet 0.00606 8 6 0.00134 6 B-arupensi 0.00263 6 B-berhoffi 0.00247 9 12 0.00050 12 11 0.00009 11 10 0.00043 10 B-birtlesi 0.00193 10 B-grahamii 0.00097 11 B--doshiae 0.00137 12 B-vinsonii 0.00208 4 B-bacillif 0.00685 2 A-tumefaci 0.06479 Data set # 24: Neighbor-joining method Negative branch lengths allowed +B-bacillif +--3 ! +B-quintana ! +--6 +B-henselae ! ! ! ! ! ! +B--doshiae ! ! ! +--8 ! +--7 +--9 +B-vinsonii ! ! ! ! ! ! +-10 +B-birtlesi ! ! ! ! +--5 +-11 +B-grahamii ! ! ! ! ! ! +B-arupensi ! ! +-12 ! ! +B-berhoffi ! ! ! ! +B--weissii ! ! +--1 ! +--4 +B-spp-Deer ! ! ! +B-clarridg ! --2B-elizabet ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 5 0.00110 5 6 0.00120 6 3 0.00171 3 B-bacillif 0.00777 3 B-quintana 0.00993 6 7 0.00108 7 B-henselae 0.00364 7 11 0.00062 11 10 0.00026 10 9 0.00018 9 8 0.00027 8 B--doshiae 0.00003 8 B-vinsonii 0.00067 9 B-birtlesi 0.00123 10 B-grahamii 0.00162 11 12 0.00022 12 B-arupensi 0.00189 12 B-berhoffi 0.00251 5 4 0.00051 4 1 0.00437 1 B--weissii 0.00111 1 B-spp-Deer 0.00179 4 B-clarridg 0.00963 2 B-elizabet 0.00534 2 A-tumefaci 0.06226 Data set # 25: Neighbor-joining method Negative branch lengths allowed +B-bacillif ! ! +B-clarridg ! ! ! ! +B-arupensi ! ! +--9 ! ! ! +B-vinsonii ! ! +-12 ! ! ! ! +B--doshiae ! ! ! +-10 --2--3 +-11 +B-birtlesi ! ! ! ! ! ! ! ! +B-grahamii ! ! ! ! +--5 ! ! ! +--7 +B-elizabet ! ! +--8 ! ! ! ! ! +B-berhoffi ! ! ! ! ! ! ! ! +B-spp-Deer ! +--6 ! +--1 ! ! +--4 +B--weissii ! ! ! ! ! +B-henselae ! ! ! +B-quintana ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 B-bacillif 0.00927 2 3 0.00406 3 B-clarridg 0.01344 3 6 0.00224 6 8 0.00118 8 11 0.00092 11 12 0.00053 12 9 0.00094 9 B-arupensi 0.00308 9 B-vinsonii 0.00202 12 10 0.00053 10 B--doshiae 0.00117 10 B-birtlesi 0.00243 11 7 0.00115 7 5 0.00120 5 B-grahamii 0.00114 5 B-elizabet 0.01126 7 B-berhoffi 0.00320 8 4 0.00212 4 1 0.00903 1 B-spp-Deer 0.00149 1 B--weissii 0.00071 4 B-henselae 0.00267 6 B-quintana 0.00888 2 A-tumefaci 0.07253 Data set # 26: Neighbor-joining method Negative branch lengths allowed +B-berhoffi ! ! +B-arupensi +--5 ! ! ! ! +B-vinsonii ! ! ! ! ! ! ! +--9 +B-henselae ! +--6 ! ! ! ! ! ! +-10 +B-elizabet ! ! ! ! +--8 ! ! ! ! ! +B-grahamii ! ! ! +-11 ! ! ! ! +B--doshiae ! +--7 +-12 ! ! +B-birtlesi ! ! ! ! +B-spp-Deer ! ! +--1 ! ! +--3 +B--weissii ! ! ! ! ! +--4 +B-bacillif ! ! ! +B-quintana ! --2B-clarridg ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 5 0.00472 5 B-berhoffi 0.00163 5 6 0.00040 6 B-arupensi 0.00257 6 7 0.00088 7 9 0.00262 9 B-vinsonii 0.00221 9 10 0.00021 10 B-henselae 0.00574 10 11 0.00057 11 8 0.00056 8 B-elizabet 0.00979 8 B-grahamii 0.00051 11 12 0.00019 12 B--doshiae 0.00026 12 B-birtlesi 0.00264 7 4 0.00203 4 3 0.00148 3 1 0.00583 1 B-spp-Deer 0.00099 1 B--weissii 0.00051 3 B-bacillif 0.01042 4 B-quintana 0.00739 2 B-clarridg 0.00453 2 A-tumefaci 0.06317 Data set # 27: Neighbor-joining method Negative branch lengths allowed +B-birtlesi +--9 +-10 +B-grahamii ! ! +-12 +B-vinsonii ! ! ! ! +B-arupensi ! +--8 ! +B-berhoffi ! +-11 +B-bacillif ! ! +--2 ! ! ! ! +B-spp-Deer ! ! +--4 +--1 ! ! ! ! +B--weissii ! ! +--5 ! +--6 ! ! ! +B-henselae ! ! +--7 ! ! ! ! +B-quintana ! ! ! ! ! +B--doshiae ! ! ! +B-elizabet ! --3B-clarridg ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 6 0.00302 6 11 0.00161 11 12 0.00021 12 10 0.00047 10 9 0.00023 9 B-birtlesi 0.00262 9 B-grahamii 0.00108 10 B-vinsonii 0.00087 12 8 0.00052 8 B-arupensi 0.00216 8 B-berhoffi 0.00154 11 7 0.00098 7 5 0.00099 5 4 0.00094 4 2 0.00296 2 B-bacillif 0.00968 2 1 0.00502 1 B-spp-Deer 0.00114 1 B--weissii 0.00036 4 B-henselae 0.00474 5 B-quintana 0.00735 7 B--doshiae 0.00102 6 B-elizabet 0.00408 3 B-clarridg 0.00631 3 A-tumefaci 0.06199 Data set # 28: Neighbor-joining method Negative branch lengths allowed +B--weissii +--1 +--2 +B-spp-Deer ! ! +--3 +B-bacillif ! ! +--4 +B-clarridg ! ! +--5 +B-quintana ! ! +--9 +B-henselae ! ! ! ! +B--doshiae ! +-10 ! ! +B-vinsonii +--8 +-11 ! ! ! +B-grahamii ! ! +-12 ! ! +B-birtlesi ! ! ! ! +B-arupensi ! +--6 ! +B-berhoffi ! --7B-elizabet ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 7 8 0.00089 8 9 0.00100 9 5 0.00233 5 4 0.00117 4 3 0.00045 3 2 0.00305 2 1 0.00617 1 B--weissii 0.00120 1 B-spp-Deer 0.00250 2 B-bacillif 0.00708 3 B-clarridg 0.00990 4 B-quintana 0.01309 5 B-henselae 0.00303 9 10 0.00165 10 B--doshiae 0.00141 10 11 0.00078 11 B-vinsonii 0.00126 11 12 0.00019 12 B-grahamii 0.00145 12 B-birtlesi 0.00145 8 6 0.00111 6 B-arupensi 0.00347 6 B-berhoffi 0.00243 7 B-elizabet 0.00818 7 A-tumefaci 0.06822 Data set # 29: Neighbor-joining method Negative branch lengths allowed +B--weissii +--1 ! +B-spp-Deer +--3 ! ! +B-quintana ! +--2 +--7 +B-bacillif ! ! ! ! +B-henselae ! ! ! ! +--9 +B-vinsonii ! ! ! ! +-10 +B--doshiae +--6 ! ! ! ! +-11 +B-elizabet ! ! ! +--8 ! ! +-12 +B-grahamii ! ! ! ! ! +B-birtlesi ! ! ! ! +B-berhoffi ! +--5 ! +B-arupensi ! --4B-clarridg ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 4 6 0.00139 6 7 0.00060 7 3 0.00162 3 1 0.00484 1 B--weissii 0.00037 1 B-spp-Deer 0.00113 3 2 0.00248 2 B-quintana 0.00696 2 B-bacillif 0.00854 7 9 0.00368 9 B-henselae 0.00200 9 10 0.00063 10 B-vinsonii 0.00122 10 11 0.00020 11 B--doshiae 0.00065 11 12 0.00010 12 8 0.00136 8 B-elizabet 0.00768 8 B-grahamii 0.00042 12 B-birtlesi 0.00154 6 5 0.00031 5 B-berhoffi 0.00138 5 B-arupensi 0.00082 4 B-clarridg 0.01241 4 A-tumefaci 0.05019 Data set # 30: Neighbor-joining method Negative branch lengths allowed +B-berhoffi +--6 +--7 +B-arupensi ! ! ! +B-quintana +--8 ! ! +B-henselae ! ! +--9 ! ! ! +B--doshiae ! +-11 +--5 ! +B-vinsonii ! ! +-12 ! ! ! +B-grahamii ! ! +-10 ! ! +B-birtlesi +--4 ! ! ! +B-elizabet ! ! ! ! +B--weissii ! ! +--1 ! +--3 +B-spp-Deer ! ! ! +B-bacillif ! --2B-clarridg ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 4 0.00145 4 5 0.00182 5 8 0.00291 8 7 0.00055 7 6 0.00042 6 B-berhoffi 0.00201 6 B-arupensi 0.00239 7 B-quintana 0.00693 8 11 0.00108 11 9 0.00075 9 B-henselae 0.00459 9 B--doshiae 0.00051 11 12 0.00031 12 B-vinsonii 0.00209 12 10 0.00051 10 B-grahamii 0.00110 10 B-birtlesi 0.00180 5 B-elizabet 0.01055 4 3 0.00087 3 1 0.00725 1 B--weissii 0.00095 1 B-spp-Deer 0.00195 3 B-bacillif 0.00980 2 B-clarridg 0.01093 2 A-tumefaci 0.06307 Data set # 31: Neighbor-joining method Negative branch lengths allowed +B-quintana ! ! +B-henselae ! ! ! ! +B-birtlesi +--7 +-12 +-10 ! ! ! ! ! ! +B-vinsonii ! ! ! ! ! +--9 ! ! ! +-11 +B--doshiae ! ! ! ! ! +--8 ! +B-grahamii ! ! +--6 +--4 ! +B-elizabet ! ! ! ! ! ! +B-arupensi ! ! +--5 ! ! +B-berhoffi ! ! ! ! +B--weissii ! ! +--1 ! +--3 +B-spp-Deer ! ! ! +B-bacillif ! --2B-clarridg ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 4 0.00293 4 7 0.00235 7 B-quintana 0.00772 7 8 0.00019 8 12 0.00229 12 B-henselae 0.00469 12 11 0.00027 11 10 0.00052 10 B-birtlesi 0.00343 10 9 0.00027 9 B-vinsonii 0.00024 9 B--doshiae 0.00046 11 6 0.00169 6 B-grahamii 0.00126 6 B-elizabet 0.00824 8 5 0.00148 5 B-arupensi 0.00237 5 B-berhoffi 0.00053 4 3 0.00131 3 1 0.00744 1 B--weissii 0.00102 1 B-spp-Deer 0.00118 3 B-bacillif 0.00806 2 B-clarridg 0.00673 2 A-tumefaci 0.06577 Data set # 32: Neighbor-joining method Negative branch lengths allowed +B-clarridg ! ! +B-quintana ! ! ! ! +B-arupensi ! ! +--6 ! ! ! +B-berhoffi ! ! ! ! +--4 ! +B--doshiae ! ! ! +--7 +-11 ! ! ! ! ! ! ! +B-birtlesi ! ! ! ! ! ! +-12 ! ! ! ! ! ! ! +B-grahamii ! ! ! ! +-10 +--8 ! ! ! ! ! +B-elizabet ! ! +--5 ! --2--3 ! ! +B-henselae ! ! ! +--9 ! ! ! +B-vinsonii ! ! ! ! ! ! +B--weissii ! ! +--1 ! ! +B-spp-Deer ! ! ! +B-bacillif ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 B-clarridg 0.01155 2 3 0.00376 3 4 0.00066 4 B-quintana 0.00946 4 5 0.00112 5 7 0.00234 7 6 0.00075 6 B-arupensi 0.00284 6 B-berhoffi 0.00156 7 10 0.00129 10 11 0.00054 11 B--doshiae 0.00059 11 12 0.00016 12 B-birtlesi 0.00154 12 8 0.00101 8 B-grahamii 0.00038 8 B-elizabet 0.00542 10 9 0.00046 9 B-henselae 0.00180 9 B-vinsonii 0.00180 5 1 0.00657 1 B--weissii 0.00060 1 B-spp-Deer 0.00230 3 B-bacillif 0.01094 2 A-tumefaci 0.06375 Data set # 33: Neighbor-joining method Negative branch lengths allowed +B-arupensi +--4 ! +B-berhoffi ! +--7 +B-quintana ! ! +--6 ! ! ! +B-henselae ! +--8 ! ! +B-elizabet ! +--9 ! ! +B--doshiae +--5 +-10 ! ! ! +B-vinsonii ! ! +-11 ! ! ! +B-grahamii ! ! +-12 ! ! +B-birtlesi ! ! ! ! +B-bacillif ! +--3 ! ! +B-spp-Deer ! +--1 ! +B--weissii ! --2B-clarridg ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 5 0.00715 5 7 0.00207 7 4 0.00205 4 B-arupensi 0.00378 4 B-berhoffi 0.00132 7 8 0.00062 8 6 0.00112 6 B-quintana 0.00973 6 B-henselae 0.00417 8 9 0.00074 9 B-elizabet 0.00674 9 10 0.00177 10 B--doshiae 0.00162 10 11 0.00049 11 B-vinsonii 0.00132 11 12 0.00018 12 B-grahamii 0.00001 12 B-birtlesi -0.00001 5 3 0.00104 3 B-bacillif 0.00995 3 1 0.00700 1 B-spp-Deer 0.00322 1 B--weissii 0.00118 2 B-clarridg 0.00971 2 A-tumefaci 0.06289 Data set # 34: Neighbor-joining method Negative branch lengths allowed +B-clarridg ! ! +B-berhoffi ! +--8 ! ! +B-arupensi ! ! ! +--9 +B-grahamii ! ! ! +--7 ! ! ! ! +B-elizabet ! ! +-10 ! ! ! +B-vinsonii ! ! +-11 ! ! ! +B-birtlesi --5--6 +-12 ! ! +B--doshiae ! ! ! ! +B-henselae ! ! +--3 ! ! ! ! +B--weissii ! ! ! +--1 ! +--4 +B-spp-Deer ! ! ! ! +B-bacillif ! +--2 ! +B-quintana ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 5 B-clarridg 0.00758 5 6 0.00191 6 9 0.00102 9 8 0.00064 8 B-berhoffi 0.00143 8 B-arupensi 0.00517 9 10 0.00068 10 7 0.00101 7 B-grahamii 0.00091 7 B-elizabet 0.00859 10 11 0.00055 11 B-vinsonii 0.00341 11 12 0.00024 12 B-birtlesi 0.00132 12 B--doshiae 0.00088 6 4 0.00230 4 3 0.00088 3 B-henselae 0.00523 3 1 0.00397 1 B--weissii 0.00112 1 B-spp-Deer 0.00258 4 2 0.00189 2 B-bacillif 0.00570 2 B-quintana 0.00980 5 A-tumefaci 0.04632 Data set # 35: Neighbor-joining method Negative branch lengths allowed +B-bacillif ! +--4 +B-quintana ! ! ! ! +--6 +B-berhoffi ! ! +--5 ! ! ! +B-arupensi ! +--7 ! ! +B-vinsonii ! +--9 ! ! +B-henselae +--3 +-10 ! ! ! +B--doshiae ! ! +-12 ! ! ! +B-birtlesi ! ! +-11 ! ! ! +B-grahamii ! ! +--8 ! ! +B-elizabet ! ! ! ! +B-spp-Deer ! +--1 ! +B--weissii ! --2B-clarridg ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 3 0.00380 3 4 0.00080 4 B-bacillif 0.00915 4 6 0.00065 6 B-quintana 0.00656 6 7 0.00109 7 5 0.00131 5 B-berhoffi 0.00162 5 B-arupensi 0.00278 7 9 0.00340 9 B-vinsonii 0.00174 9 10 0.00013 10 B-henselae 0.00391 10 12 0.00029 12 B--doshiae 0.00054 12 11 0.00021 11 B-birtlesi 0.00089 11 8 0.00166 8 B-grahamii 0.00043 8 B-elizabet 0.00767 3 1 0.00570 1 B-spp-Deer 0.00283 1 B--weissii 0.00087 2 B-clarridg 0.00964 2 A-tumefaci 0.05766 Data set # 36: Neighbor-joining method Negative branch lengths allowed +B-clarridg ! ! +B-berhoffi ! +--7 ! ! +B-arupensi ! ! ! +--8 +B-grahamii ! ! ! +--3 ! ! ! ! +B-elizabet ! ! +-12 ! ! ! +B-birtlesi ! ! ! ! ! ! +-11 +B-henselae --2--6 ! +--9 ! ! +-10 +B-vinsonii ! ! ! ! ! +B--doshiae ! ! ! ! +B-bacillif ! ! +--4 ! ! ! ! +B-spp-Deer ! +--5 +--1 ! ! +B--weissii ! ! ! +B-quintana ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 B-clarridg 0.00716 2 6 0.00648 6 8 0.00099 8 7 0.00055 7 B-berhoffi 0.00104 7 B-arupensi 0.00556 8 12 0.00200 12 3 0.00169 3 B-grahamii 0.00077 3 B-elizabet 0.00433 12 11 0.00044 11 B-birtlesi 0.00234 11 10 0.00056 10 9 0.00039 9 B-henselae 0.00335 9 B-vinsonii 0.00105 10 B--doshiae 0.00036 6 5 0.00040 5 4 0.00076 4 B-bacillif 0.00474 4 1 0.00556 1 B-spp-Deer 0.00185 1 B--weissii 0.00035 5 B-quintana 0.00734 2 A-tumefaci 0.05564 Data set # 37: Neighbor-joining method Negative branch lengths allowed +B-elizabet ! ! +B-grahamii ! +--4 ! ! +B-henselae +--7 +-10 ! ! ! ! +B--doshiae ! ! ! ! ! ! ! ! +-11 +B-vinsonii ! ! ! ! +--8 ! +--9 +-12 +B-arupensi ! ! ! +--6 ! +B-berhoffi ! ! ! ! ! ! +B-birtlesi ! ! +--5 ! ! +B-quintana ! ! ! ! +B-spp-Deer ! ! +--1 ! +--2 +B--weissii ! ! ! +B-bacillif ! --3B-clarridg ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 6 0.00221 6 7 0.00060 7 B-elizabet 0.00605 7 9 0.00076 9 10 0.00054 10 4 0.00160 4 B-grahamii 0.00125 4 B-henselae 0.00465 10 11 0.00043 11 B--doshiae 0.00130 11 12 0.00018 12 8 0.00083 8 B-vinsonii 0.00207 8 B-arupensi 0.00303 12 B-berhoffi 0.00137 9 5 0.00147 5 B-birtlesi 0.00250 5 B-quintana 0.01150 6 2 0.00292 2 1 0.00555 1 B-spp-Deer 0.00230 1 B--weissii 0.00280 2 B-bacillif 0.00710 3 B-clarridg 0.00927 3 A-tumefaci 0.06273 Data set # 38: Neighbor-joining method Negative branch lengths allowed +B-clarridg ! ! +B-birtlesi ! ! ! +-10 +B--doshiae ! ! ! +--8 ! ! ! ! +B-henselae ! ! +--9 ! +-11 ! +B-vinsonii ! ! ! +--7 ! ! ! +B-arupensi ! ! ! ! ! ! +B-quintana ! ! +-12 ! ! ! +B-berhoffi --2--4 +--6 ! ! ! +B-elizabet ! ! +--5 ! ! +B-grahamii ! ! ! ! +B-spp-Deer ! ! +--1 ! +--3 +B--weissii ! ! ! +B-bacillif ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 B-clarridg 0.00899 2 4 0.00252 4 11 0.00267 11 10 0.00029 10 B-birtlesi 0.00269 10 9 0.00059 9 8 0.00035 8 B--doshiae 0.00082 8 B-henselae 0.00428 9 7 0.00042 7 B-vinsonii 0.00123 7 B-arupensi 0.00537 11 12 0.00018 12 B-quintana 0.00666 12 6 0.00054 6 B-berhoffi 0.00212 6 5 0.00078 5 B-elizabet 0.00771 5 B-grahamii 0.00109 4 3 0.00065 3 1 0.00362 1 B-spp-Deer 0.00179 1 B--weissii 0.00111 3 B-bacillif 0.00888 2 A-tumefaci 0.04641 Data set # 39: Neighbor-joining method Negative branch lengths allowed +B-elizabet ! ! +B-birtlesi ! +-11 +--9 +-12 +B-grahamii ! ! ! ! ! ! ! +B-vinsonii ! ! ! ! ! ! +B--weissii ! +-10 +--1 ! ! ! +B-spp-Deer ! ! +--3 +--8 ! ! ! +B-clarridg ! ! ! +--4 +--2 ! ! ! ! ! +B-quintana ! ! +--7 ! ! ! ! +B-henselae ! ! ! ! ! +B--doshiae ! ! ! ! +B-arupensi ! +--6 ! +B-berhoffi ! --5B-bacillif ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 5 8 0.00238 8 9 0.00035 9 B-elizabet 0.00610 9 10 0.00130 10 12 0.00069 12 11 0.00045 11 B-birtlesi 0.00066 11 B-grahamii 0.00004 12 B-vinsonii 0.00175 10 7 0.00162 7 4 0.00193 4 3 0.00122 3 1 0.00748 1 B--weissii 0.00073 1 B-spp-Deer 0.00077 3 2 0.00064 2 B-clarridg 0.00781 2 B-quintana 0.01059 4 B-henselae 0.00749 7 B--doshiae 0.00147 8 6 0.00152 6 B-arupensi 0.00501 6 B-berhoffi 0.00089 5 B-bacillif 0.00940 5 A-tumefaci 0.05190 Data set # 40: Neighbor-joining method Negative branch lengths allowed +B-bacillif ! ! +B--weissii ! +--1 ! +--3 +B-spp-Deer ! ! ! ! +--4 +B-clarridg ! ! ! ! ! +B-quintana ! ! ! ! +B-birtlesi ! +--8 +-12 ! ! ! ! +B-vinsonii ! ! ! +-11 ! ! ! ! ! +B-henselae ! ! ! ! ! +--7 ! ! ! ! +-10 +B--doshiae --2--6 +--9 ! ! ! ! +B-grahamii ! ! ! ! ! ! +B-berhoffi ! ! +--5 ! ! +B-arupensi ! ! ! +B-elizabet ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 B-bacillif 0.00814 2 6 0.00281 6 8 0.00120 8 4 0.00289 4 3 0.00082 3 1 0.00849 1 B--weissii 0.00180 1 B-spp-Deer 0.00260 3 B-clarridg 0.01441 4 B-quintana 0.01101 8 9 0.00054 9 11 0.00084 11 12 0.00036 12 B-birtlesi 0.00211 12 B-vinsonii 0.00149 11 10 0.00058 10 7 0.00123 7 B-henselae 0.00435 7 B--doshiae 0.00075 10 B-grahamii 0.00242 9 5 0.00194 5 B-berhoffi 0.00129 5 B-arupensi 0.00461 6 B-elizabet 0.00609 2 A-tumefaci 0.05376 Data set # 41: Neighbor-joining method Negative branch lengths allowed +B--weissii +--1 +--4 +B-spp-Deer ! ! ! +B-bacillif ! +--6 +B-quintana ! ! ! ! ! ! +B-grahamii ! ! ! +--3 ! ! ! +--9 +B-elizabet ! +--7 ! ! ! ! +-10 +B-henselae ! ! ! ! ! ! ! ! +B-vinsonii ! ! ! +-12 ! +--8 ! +B--doshiae ! ! +-11 ! ! +B-birtlesi ! ! ! ! +B-arupensi ! +--5 ! +B-berhoffi ! --2B-clarridg ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 6 0.00320 6 4 0.00072 4 1 0.00531 1 B--weissii 0.00225 1 B-spp-Deer 0.00285 4 B-bacillif 0.00949 6 7 0.00109 7 B-quintana 0.00943 7 8 0.00086 8 10 0.00307 10 9 0.00024 9 3 0.00215 3 B-grahamii 0.00248 3 B-elizabet 0.01002 9 B-henselae 0.00590 10 12 0.00148 12 B-vinsonii 0.00139 12 11 0.00006 11 B--doshiae 0.00077 11 B-birtlesi 0.00213 8 5 0.00168 5 B-arupensi 0.00373 5 B-berhoffi 0.00137 2 B-clarridg 0.01135 2 A-tumefaci 0.05185 Data set # 42: Neighbor-joining method Negative branch lengths allowed +B-clarridg ! ! +B-elizabet ! ! ! ! +B-henselae ! ! ! ! +--5 +--9 +B-vinsonii ! ! ! ! ! ! ! ! ! ! +-10 +B-birtlesi ! ! ! ! ! +-11 ! ! ! ! +-12 +B-grahamii ! ! +--8 ! ! ! ! +B--doshiae --3--4 ! ! ! ! +B-quintana ! ! ! +--6 ! ! +--7 +B-arupensi ! ! ! ! ! +B-berhoffi ! ! ! ! +B-bacillif ! +--2 ! ! +B-spp-Deer ! +--1 ! +B--weissii ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 B-clarridg 0.00488 3 4 0.00191 4 5 0.00154 5 B-elizabet 0.00796 5 8 0.00221 8 9 0.00115 9 B-henselae 0.00409 9 10 0.00045 10 B-vinsonii 0.00173 10 12 0.00050 12 11 0.00026 11 B-birtlesi 0.00041 11 B-grahamii 0.00109 12 B--doshiae 0.00009 8 7 0.00101 7 6 0.00078 6 B-quintana 0.00675 6 B-arupensi 0.00205 7 B-berhoffi 0.00432 4 2 0.00254 2 B-bacillif 0.00351 2 1 0.00754 1 B-spp-Deer 0.00100 1 B--weissii 0.00050 3 A-tumefaci 0.04872 Data set # 43: Neighbor-joining method Negative branch lengths allowed +B--weissii +--1 +--3 +B-spp-Deer ! ! ! +B-bacillif +--4 ! ! +B-elizabet ! ! ! ! +--5 +B-berhoffi ! ! ! ! ! ! +B-henselae ! +--8 +--9 ! ! ! ! +B-vinsonii ! ! ! +--7 ! ! ! ! +B-quintana ! +-10 +--6 ! ! +B-arupensi ! ! ! ! +B--doshiae ! +-11 ! ! +B-birtlesi ! +-12 ! +B-grahamii ! --2B-clarridg ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 4 0.00472 4 3 0.00230 3 1 0.00370 1 B--weissii 0.00021 1 B-spp-Deer 0.00349 3 B-bacillif 0.00660 4 5 0.00232 5 B-elizabet 0.00668 5 8 0.00127 8 B-berhoffi 0.00202 8 10 0.00045 10 9 0.00025 9 B-henselae 0.00260 9 7 0.00110 7 B-vinsonii 0.00152 7 6 0.00028 6 B-quintana 0.00639 6 B-arupensi 0.00241 10 11 0.00026 11 B--doshiae 0.00027 11 12 0.00013 12 B-birtlesi 0.00119 12 B-grahamii 0.00101 2 B-clarridg 0.00940 2 A-tumefaci 0.07330 Data set # 44: Neighbor-joining method Negative branch lengths allowed +B-clarridg ! ! +B-bacillif ! +--2 ! ! +B-quintana ! +--4 ! ! ! +B--weissii ! ! +--1 ! ! +B-spp-Deer --3--5 ! ! +B-henselae ! ! ! ! ! ! +B-grahamii ! ! ! +-11 ! +--6 ! ! +B--doshiae ! ! ! +--9 ! ! +-12 +B-birtlesi ! ! ! ! ! ! ! ! +B-elizabet ! +-10 +--8 ! ! +B-berhoffi ! ! ! ! +B-arupensi ! +--7 ! +B-vinsonii ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 B-clarridg 0.01093 3 5 0.00223 5 4 0.00085 4 2 0.00198 2 B-bacillif 0.01600 2 B-quintana 0.01230 4 1 0.00840 1 B--weissii 0.00160 1 B-spp-Deer 0.00350 5 6 0.00185 6 B-henselae 0.00708 6 10 0.00145 10 12 0.00059 12 11 0.00033 11 B-grahamii 0.00195 11 9 0.00060 9 B--doshiae 0.00019 9 B-birtlesi 0.00341 12 8 0.00097 8 B-elizabet 0.00886 8 B-berhoffi 0.00144 10 7 0.00157 7 B-arupensi 0.00343 7 B-vinsonii 0.00317 3 A-tumefaci 0.05897 Data set # 45: Neighbor-joining method Negative branch lengths allowed +B-clarridg ! ! +B-elizabet ! +--9 ! ! ! +B-grahamii ! ! +-10 ! ! ! +B-birtlesi ! +--8 +-12 ! ! ! ! +B--doshiae ! ! ! +-11 ! ! ! +B-vinsonii ! +--7 ! ! ! ! +B-henselae ! ! ! ! ! ! +B-berhoffi ! ! +--6 --4--5 +B-arupensi ! ! ! ! +B--weissii ! ! +--1 ! ! +--2 +B-spp-Deer ! ! ! ! ! +--3 +B-bacillif ! ! ! +B-quintana ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 4 B-clarridg 0.00842 4 5 0.00138 5 7 0.00175 7 8 0.00225 8 9 0.00054 9 B-elizabet 0.00677 9 10 0.00034 10 B-grahamii 0.00068 10 12 0.00045 12 B-birtlesi 0.00120 12 11 0.00025 11 B--doshiae 0.00071 11 B-vinsonii 0.00079 8 B-henselae 0.00630 7 6 0.00023 6 B-berhoffi 0.00268 6 B-arupensi 0.00242 5 3 0.00159 3 2 0.00221 2 1 0.00630 1 B--weissii 0.00095 1 B-spp-Deer 0.00195 2 B-bacillif 0.00770 3 B-quintana 0.00662 4 A-tumefaci 0.05888 Data set # 46: Neighbor-joining method Negative branch lengths allowed +B-quintana ! ! +B-berhoffi ! +--6 ! ! +B-arupensi +--5 ! ! ! +--8 +B-henselae ! ! ! ! +--9 ! ! ! ! ! +B-vinsonii ! ! ! +-10 ! ! ! ! +B-birtlesi ! +--7 ! +-11 +--4 ! +-12 +B--doshiae ! ! ! ! ! ! ! +B-grahamii ! ! ! ! ! +B-elizabet ! ! ! ! +B--weissii ! ! +--1 ! +--3 +B-spp-Deer ! ! ! +B-bacillif ! --2B-clarridg ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 4 0.00182 4 5 0.00216 5 B-quintana 0.00474 5 7 0.00083 7 8 0.00047 8 6 0.00075 6 B-berhoffi 0.00151 6 B-arupensi 0.00359 8 10 0.00071 10 9 0.00070 9 B-henselae 0.00470 9 B-vinsonii 0.00110 10 12 0.00051 12 11 0.00010 11 B-birtlesi 0.00218 11 B--doshiae 0.00002 12 B-grahamii 0.00060 7 B-elizabet 0.00842 4 3 0.00180 3 1 0.00444 1 B--weissii 0.00101 1 B-spp-Deer 0.00119 3 B-bacillif 0.00731 2 B-clarridg 0.00694 2 A-tumefaci 0.05136 Data set # 47: Neighbor-joining method Negative branch lengths allowed +B-berhoffi ! ! +B-vinsonii ! +--6 ! ! +B-arupensi ! ! ! ! +B--weissii ! ! +--1 +--8 +-10 +--4 +B-spp-Deer ! ! ! ! ! ! ! ! ! ! +--5 +B-clarridg ! ! ! ! ! ! ! ! ! ! +--7 +B-quintana ! ! +-11 ! ! ! ! ! ! ! +--9 +B-henselae +--3 ! ! ! ! ! ! +-12 ! +B--doshiae ! ! ! ! ! ! ! +B-birtlesi ! ! ! ! ! +B-grahamii ! ! ! +B-elizabet ! --2B-bacillif ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 3 0.00102 3 8 0.00299 8 B-berhoffi 0.00363 8 12 0.00102 12 11 0.00033 11 10 0.00053 10 6 0.00219 6 B-vinsonii 0.00139 6 B-arupensi 0.00371 10 9 0.00045 9 7 0.00161 7 5 0.00115 5 4 0.00147 4 1 0.00974 1 B--weissii 0.00102 1 B-spp-Deer 0.00118 4 B-clarridg 0.01101 5 B-quintana 0.01033 7 B-henselae 0.00494 9 B--doshiae 0.00120 11 B-birtlesi 0.00329 12 B-grahamii 0.00174 3 B-elizabet 0.00683 2 B-bacillif 0.01002 2 A-tumefaci 0.06658 Data set # 48: Neighbor-joining method Negative branch lengths allowed +B-elizabet ! +--4 +B-clarridg ! ! ! ! +--5 +B-quintana ! ! ! ! +--6 +B-arupensi ! ! +--7 ! ! ! +B-berhoffi ! +--8 ! ! +B-henselae +--3 +--9 ! ! ! +B-vinsonii ! ! +-10 ! ! ! +B-grahamii ! ! +-11 ! ! ! +B--doshiae ! ! +-12 ! ! +B-birtlesi ! ! ! ! +B-spp-Deer ! +--1 ! +B--weissii ! --2B-bacillif ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 3 0.00164 3 4 0.00260 4 B-elizabet 0.01191 4 5 0.00174 5 B-clarridg 0.01187 5 6 0.00260 6 B-quintana 0.01633 6 8 0.00176 8 7 0.00112 7 B-arupensi 0.00297 7 B-berhoffi 0.00073 8 9 0.00086 9 B-henselae 0.00522 9 10 0.00114 10 B-vinsonii 0.00247 10 11 0.00039 11 B-grahamii 0.00340 11 12 0.00025 12 B--doshiae 0.00062 12 B-birtlesi 0.00228 3 1 0.00769 1 B-spp-Deer 0.00268 1 B--weissii 0.00172 2 B-bacillif 0.01178 2 A-tumefaci 0.07722 Data set # 49: Neighbor-joining method Negative branch lengths allowed +B-clarridg ! ! +B-bacillif ! ! ! ! +B-quintana ! ! ! ! ! +--6 +B-henselae ! ! ! ! ! --1--3 ! ! ! +B-elizabet ! ! ! +--8 +--4 ! ! ! ! +--7 +B-grahamii ! ! ! ! ! ! ! ! ! +--9 +B-berhoffi ! ! ! ! ! +--5 ! +B-birtlesi ! ! +-10 ! ! ! +B--doshiae ! ! +-12 ! ! ! +B-vinsonii ! ! +-11 ! ! +B-arupensi ! ! ! ! +B-spp-Deer ! +--2 ! +B--weissii ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 1 B-clarridg 0.00895 1 3 0.00412 3 B-bacillif 0.00638 3 5 0.00179 5 6 0.00032 6 B-quintana 0.00835 6 8 0.00140 8 B-henselae 0.00581 8 9 0.00081 9 7 0.00108 7 4 0.00153 4 B-elizabet 0.01035 4 B-grahamii 0.00135 7 B-berhoffi 0.00182 9 10 0.00041 10 B-birtlesi 0.00203 10 12 0.00015 12 B--doshiae 0.00073 12 11 0.00002 11 B-vinsonii 0.00145 11 B-arupensi 0.00365 5 2 0.00510 2 B-spp-Deer 0.00325 2 B--weissii 0.00115 1 A-tumefaci 0.05435 Data set # 50: Neighbor-joining method Negative branch lengths allowed +B-elizabet ! ! +B-grahamii ! ! ! ! +B-clarridg ! ! +--5 ! ! ! +B-quintana ! ! ! ! ! +--6 +B-bacillif ! +-11 ! ! +--2 ! ! ! ! ! ! ! +B--weissii ! ! ! ! +--4 +--1 ! ! ! +-10 ! +B-spp-Deer ! ! ! ! ! ! ! ! ! ! ! +B-henselae ! ! ! ! ! --3--7 +-12 +B-birtlesi ! ! ! ! ! ! +B-arupensi ! ! ! +--8 ! ! +--9 +B-vinsonii ! ! ! ! ! +B--doshiae ! ! ! +B-berhoffi ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 B-elizabet 0.00556 3 7 0.00265 7 11 0.00075 11 B-grahamii 0.00090 11 12 0.00030 12 10 0.00031 10 6 0.00169 6 5 0.00101 5 B-clarridg 0.01049 5 B-quintana 0.01101 6 4 0.00112 4 2 0.00353 2 B-bacillif 0.00830 2 1 0.00940 1 B--weissii 0.00075 1 B-spp-Deer 0.00295 4 B-henselae 0.00327 10 B-birtlesi 0.00229 12 9 0.00045 9 8 0.00052 8 B-arupensi 0.00241 8 B-vinsonii 0.00129 9 B--doshiae 0.00018 7 B-berhoffi 0.00105 3 A-tumefaci 0.05704 Data set # 51: Neighbor-joining method Negative branch lengths allowed +B-bacillif +--2 ! ! +B-spp-Deer +--3 +--1 ! ! +B--weissii +--4 ! ! ! +B-quintana ! ! ! +B-henselae +--7 ! ! +B-grahamii ! ! +--6 ! ! ! +B-elizabet ! +--8 ! ! +B-birtlesi ! ! ! ! +-10 +B-vinsonii ! ! +--9 ! ! ! +B-arupensi ! +-11 ! ! +B-berhoffi ! +-12 ! +B--doshiae ! --5B-clarridg ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 5 7 0.00268 7 4 0.00378 4 3 0.00057 3 2 0.00098 2 B-bacillif 0.00420 2 1 0.00680 1 B-spp-Deer 0.00117 1 B--weissii 0.00103 3 B-quintana 0.00784 4 B-henselae 0.00361 7 8 0.00060 8 6 0.00066 6 B-grahamii 0.00072 6 B-elizabet 0.00508 8 10 0.00063 10 B-birtlesi 0.00182 10 11 0.00037 11 9 0.00067 9 B-vinsonii 0.00000 9 B-arupensi 0.00150 11 12 0.00003 12 B-berhoffi -0.00001 12 B--doshiae 0.00001 5 B-clarridg 0.00812 5 A-tumefaci 0.06748 Data set # 52: Neighbor-joining method Negative branch lengths allowed +B-berhoffi ! ! +B-arupensi ! ! ! ! +B-quintana ! ! +--5 ! ! ! +B-clarridg --7--8 +--6 ! ! ! ! +B-spp-Deer ! ! ! ! +--1 ! ! ! +--2 +B--weissii ! ! ! ! ! +--9 +B-bacillif ! ! ! ! +B-vinsonii ! ! ! ! ! ! +B-elizabet ! +-11 +--3 ! ! +-10 +B-grahamii ! ! ! ! ! +-12 +B-birtlesi ! ! ! ! +B--doshiae ! +--4 ! +B-henselae ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 7 B-berhoffi 0.00142 7 8 0.00038 8 B-arupensi 0.00477 8 9 0.00105 9 6 0.00190 6 5 0.00056 5 B-quintana 0.00967 5 B-clarridg 0.01113 6 2 0.00226 2 1 0.00654 1 B-spp-Deer 0.00134 1 B--weissii 0.00086 2 B-bacillif 0.00906 9 11 0.00248 11 B-vinsonii 0.00324 11 12 0.00031 12 10 0.00059 10 3 0.00180 3 B-elizabet 0.00887 3 B-grahamii 0.00143 10 B-birtlesi 0.00225 12 4 0.00153 4 B--doshiae 0.00101 4 B-henselae 0.00339 7 A-tumefaci 0.07008 Data set # 53: Neighbor-joining method Negative branch lengths allowed +B-berhoffi +--6 ! +B-elizabet +--7 ! ! +B-arupensi ! ! ! ! +--9 +B--doshiae ! ! +-10 ! ! ! +B-birtlesi ! +-12 ! ! +B-grahamii +--5 ! +--8 ! ! +-11 +B-henselae ! ! ! ! ! +B-vinsonii ! ! ! ! +B--weissii ! ! +--1 ! ! ! +B-spp-Deer ! +--4 ! ! +B-quintana ! +--2 ! +B-bacillif ! --3B-clarridg ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 5 0.00124 5 7 0.00251 7 6 0.00044 6 B-berhoffi 0.00249 6 B-elizabet 0.00781 7 9 0.00085 9 B-arupensi 0.00185 9 12 0.00034 12 10 0.00020 10 B--doshiae 0.00002 10 B-birtlesi 0.00288 12 11 0.00020 11 8 0.00040 8 B-grahamii 0.00032 8 B-henselae 0.00188 11 B-vinsonii 0.00175 5 4 0.00031 4 1 0.01369 1 B--weissii 0.00047 1 B-spp-Deer 0.00173 4 2 0.00226 2 B-quintana 0.00781 2 B-bacillif 0.00699 3 B-clarridg 0.01121 3 A-tumefaci 0.06039 Data set # 54: Neighbor-joining method Negative branch lengths allowed +B-spp-Deer +--1 +--4 +B--weissii ! ! +--5 +B-bacillif ! ! ! +B-quintana +--6 ! ! +B-berhoffi ! ! ! ! +--9 +B-elizabet ! ! +--3 ! ! ! +B-grahamii ! +-10 ! ! +B-birtlesi ! ! ! ! +-12 +B-henselae ! ! +--7 ! ! ! +B--doshiae ! +-11 ! ! +B-vinsonii ! +--8 ! +B-arupensi ! --2B-clarridg ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 6 0.00352 6 5 0.00073 5 4 0.00189 4 1 0.00555 1 B-spp-Deer 0.00284 1 B--weissii 0.00006 4 B-bacillif 0.00850 5 B-quintana 0.00998 6 9 0.00123 9 B-berhoffi 0.00205 9 10 0.00027 10 3 0.00268 3 B-elizabet 0.00951 3 B-grahamii 0.00079 10 12 0.00118 12 B-birtlesi 0.00114 12 11 0.00031 11 7 0.00088 7 B-henselae 0.00209 7 B--doshiae 0.00011 11 8 0.00062 8 B-vinsonii 0.00119 8 B-arupensi 0.00171 2 B-clarridg 0.01306 2 A-tumefaci 0.04714 Data set # 55: Neighbor-joining method Negative branch lengths allowed +B-clarridg ! ! +B-henselae ! +--4 ! ! ! +B--weissii ! +--8 +--1 ! ! ! +B-spp-Deer ! +--9 ! ! ! ! +B-vinsonii ! ! ! ! ! +B-arupensi ! +-10 ! ! ! +B-berhoffi ! ! ! +--5 ! ! ! +--6 +B-elizabet ! ! ! ! ! ! +--7 +-11 +B-grahamii ! ! ! ! ! ! ! ! +B-birtlesi ! ! ! +-12 --2--3 ! +B--doshiae ! ! ! ! ! +B-quintana ! ! ! +B-bacillif ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 B-clarridg 0.00876 2 3 0.00373 3 7 0.00303 7 10 0.00068 10 9 0.00023 9 8 0.00054 8 4 0.00171 4 B-henselae 0.00269 4 1 0.00686 1 B--weissii 0.00058 1 B-spp-Deer 0.00312 8 B-vinsonii 0.00234 9 B-arupensi 0.00372 10 11 0.00078 11 6 0.00070 6 5 0.00111 5 B-berhoffi 0.00146 5 B-elizabet 0.00814 6 B-grahamii 0.00144 11 12 0.00031 12 B-birtlesi 0.00238 12 B--doshiae 0.00132 7 B-quintana 0.00917 3 B-bacillif 0.00832 2 A-tumefaci 0.05894 Data set # 56: Neighbor-joining method Negative branch lengths allowed +B-bacillif ! ! +B-berhoffi ! +--6 ! ! +B-arupensi ! ! ! ! +B-birtlesi ! ! +--9 --5-10 ! +B-vinsonii ! ! +-12 ! ! ! ! +B-grahamii ! ! ! +--8 ! ! ! +B-elizabet ! ! ! ! +-11 +B--weissii ! ! +--1 ! ! +--2 +B-spp-Deer ! ! ! ! ! ! +--4 +B-clarridg ! ! ! ! ! +--7 +B-quintana ! ! ! ! +B-henselae ! +--3 ! +B--doshiae ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 5 B-bacillif 0.00942 5 10 0.00163 10 6 0.00154 6 B-berhoffi 0.00051 6 B-arupensi 0.00239 10 11 0.00055 11 12 0.00047 12 9 0.00089 9 B-birtlesi 0.00236 9 B-vinsonii 0.00124 12 8 0.00134 8 B-grahamii 0.00171 8 B-elizabet 0.00929 11 7 0.00134 7 4 0.00150 4 2 0.00186 2 1 0.00678 1 B--weissii 0.00212 1 B-spp-Deer 0.00368 2 B-clarridg 0.00872 4 B-quintana 0.00921 7 3 0.00101 3 B-henselae 0.00608 3 B--doshiae 0.00122 5 A-tumefaci 0.05068 Data set # 57: Neighbor-joining method Negative branch lengths allowed +B-grahamii ! +--9 +B-arupensi ! ! +--8 ! ! ! +B-berhoffi ! +-10 ! ! +B--doshiae ! +-11 +--7 ! +B-birtlesi ! ! +-12 ! ! +B-vinsonii ! ! ! ! +B-henselae ! ! ! ! +--5 +B-bacillif +--6 ! +--2 ! ! ! ! ! +B-spp-Deer ! ! +--4 +--1 ! ! ! +B--weissii ! ! ! ! ! +B-quintana ! ! ! +B-elizabet ! --3B-clarridg ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 6 0.00441 6 7 0.00066 7 9 0.00124 9 B-grahamii 0.00087 9 10 0.00054 10 8 0.00062 8 B-arupensi 0.00058 8 B-berhoffi 0.00012 10 11 0.00025 11 B--doshiae -0.00004 11 12 0.00004 12 B-birtlesi 0.00074 12 B-vinsonii -0.00004 7 5 0.00187 5 B-henselae 0.00401 5 4 0.00055 4 2 0.00527 2 B-bacillif 0.00658 2 1 0.00222 1 B-spp-Deer 0.00204 1 B--weissii 0.00166 4 B-quintana 0.00913 6 B-elizabet 0.00739 3 B-clarridg 0.00933 3 A-tumefaci 0.04597 Data set # 58: Neighbor-joining method Negative branch lengths allowed +B-bacillif ! ! +B-spp-Deer ! +--1 ! ! +B--weissii ! ! ! ! +B-elizabet --2--3 ! ! ! ! +B-birtlesi ! ! ! +--6 ! ! ! +--7 +B-grahamii ! ! ! ! ! ! +--4 +--8 +B--doshiae ! ! ! ! ! ! ! +B-vinsonii ! ! +-11 ! ! ! ! +B-berhoffi ! ! ! ! +--9 ! ! ! ! ! +B-arupensi ! +-12 +-10 ! ! ! +B-quintana ! ! +--5 ! ! +B-clarridg ! ! ! +B-henselae ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 B-bacillif 0.00971 2 3 0.00366 3 1 0.00527 1 B-spp-Deer 0.00135 1 B--weissii 0.00085 3 4 0.00097 4 B-elizabet 0.00704 4 12 0.00184 12 11 0.00021 11 8 0.00111 8 7 0.00086 7 6 0.00007 6 B-birtlesi 0.00064 6 B-grahamii 0.00006 7 B--doshiae -0.00007 8 B-vinsonii 0.00206 11 10 0.00038 10 9 0.00044 9 B-berhoffi 0.00184 9 B-arupensi 0.00186 10 5 0.00101 5 B-quintana 0.01132 5 B-clarridg 0.01008 12 B-henselae 0.00325 2 A-tumefaci 0.05449 Data set # 59: Neighbor-joining method Negative branch lengths allowed +B-bacillif ! ! +B-berhoffi ! ! ! ! +B-spp-Deer ! ! +--1 +--4 ! +--5 +B--weissii ! ! +--9 ! ! ! ! ! ! +--8 +B-henselae ! ! ! ! ! ! ! ! ! ! +-11 +B-vinsonii ! ! ! ! ! ! ! ! ! ! ! ! +B-arupensi ! +--7 +-10 +-12 ! ! ! +B--doshiae ! ! ! ! ! +B-birtlesi ! ! ! ! +B-quintana ! +--6 ! ! +B-elizabet ! +--2 ! +B-grahamii ! --3B-clarridg ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 4 0.00038 4 B-bacillif 0.00767 4 7 0.00199 7 9 0.00099 9 B-berhoffi 0.00225 9 10 0.00026 10 11 0.00068 11 8 0.00107 8 5 0.00121 5 1 0.00412 1 B-spp-Deer 0.00255 1 B--weissii 0.00255 5 B-henselae 0.00398 8 B-vinsonii 0.00064 11 12 0.00015 12 B-arupensi 0.00265 12 B--doshiae 0.00025 10 B-birtlesi 0.00224 7 6 0.00089 6 B-quintana 0.01025 6 2 0.00160 2 B-elizabet 0.00454 2 B-grahamii 0.00206 3 B-clarridg 0.01172 3 A-tumefaci 0.05288 Data set # 60: Neighbor-joining method Negative branch lengths allowed +B-clarridg ! ! +B-bacillif ! +--3 ! ! +B-quintana ! ! --2--4 +B-spp-Deer ! ! +--1 ! ! ! +B--weissii ! +--5 ! ! +B-henselae ! ! ! ! +--6 +B--doshiae ! ! ! ! ! ! +B-arupensi ! +--8 +--7 ! ! ! +B-berhoffi ! ! ! ! +-10 +B-elizabet ! ! +--9 ! ! ! +B-grahamii ! +-12 ! ! +B-birtlesi ! +-11 ! +B-vinsonii ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 B-clarridg 0.00803 2 4 0.00372 4 3 0.00233 3 B-bacillif 0.00721 3 B-quintana 0.00599 4 5 0.00061 5 1 0.00523 1 B-spp-Deer 0.00138 1 B--weissii 0.00012 5 6 0.00214 6 B-henselae 0.00175 6 8 0.00095 8 B--doshiae 0.00060 8 10 0.00072 10 7 0.00125 7 B-arupensi 0.00077 7 B-berhoffi 0.00073 10 12 0.00023 12 9 0.00059 9 B-elizabet 0.00488 9 B-grahamii 0.00022 12 11 0.00011 11 B-birtlesi 0.00218 11 B-vinsonii 0.00002 2 A-tumefaci 0.05767 Data set # 61: Neighbor-joining method Negative branch lengths allowed +B-spp-Deer +--1 ! +B--weissii ! ! +B-clarridg ! ! ! ! +B-quintana ! ! ! ! ! ! +B--doshiae ! ! ! +-11 --2--3 ! ! ! +B-elizabet ! ! +--6 +-12 +--5 ! ! ! ! ! ! +B-grahamii ! ! ! ! ! ! ! ! ! ! +-10 +B-birtlesi ! ! ! ! ! ! ! ! ! ! ! ! +B-vinsonii ! +--4 +--8 +--9 ! ! ! +B-henselae ! ! ! ! ! ! +B-arupensi ! ! +--7 ! ! +B-berhoffi ! ! ! +B-bacillif ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 1 0.00562 1 B-spp-Deer 0.00060 1 B--weissii 0.00010 2 3 0.00115 3 B-clarridg 0.00698 3 4 0.00146 4 6 0.00172 6 B-quintana 0.00520 6 8 0.00054 8 10 0.00211 10 12 0.00038 12 11 0.00007 11 B--doshiae 0.00034 11 5 0.00111 5 B-elizabet 0.00627 5 B-grahamii 0.00033 12 B-birtlesi 0.00246 10 9 0.00047 9 B-vinsonii 0.00203 9 B-henselae 0.00377 8 7 0.00040 7 B-arupensi 0.00275 7 B-berhoffi 0.00235 4 B-bacillif 0.00846 2 A-tumefaci 0.05768 Data set # 62: Neighbor-joining method Negative branch lengths allowed +B--weissii +--1 +--2 +B-spp-Deer ! ! +--4 +B-bacillif ! ! ! +B-henselae +--7 ! ! +B-quintana ! ! +--3 ! +--5 +B-clarridg ! ! +--9 +B-vinsonii ! ! ! ! +B-berhoffi ! ! +--8 ! ! ! +B-arupensi ! +-10 ! ! +B-grahamii ! +-11 ! ! +B-birtlesi ! +-12 ! +B--doshiae ! --6B-elizabet ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 6 9 0.00193 9 7 0.00093 7 4 0.00389 4 2 0.00575 2 1 0.00552 1 B--weissii 0.00075 1 B-spp-Deer 0.00075 2 B-bacillif 0.01063 4 B-henselae 0.00267 7 5 0.00149 5 3 0.00338 3 B-quintana 0.00671 3 B-clarridg 0.00869 5 B-vinsonii 0.00287 9 10 0.00051 10 8 0.00077 8 B-berhoffi 0.00230 8 B-arupensi 0.00280 10 11 0.00163 11 B-grahamii 0.00133 11 12 0.00017 12 B-birtlesi 0.00074 12 B--doshiae -0.00004 6 B-elizabet 0.00696 6 A-tumefaci 0.06124 Data set # 63: Neighbor-joining method Negative branch lengths allowed +B-clarridg ! ! +B-berhoffi ! +--4 ! ! +B-elizabet ! ! ! ! +B-henselae ! ! ! ! ! +--7 +B-bacillif ! ! ! ! +--3 --2--5 ! ! ! ! +B--weissii ! ! ! +--6 +--1 ! ! +--9 ! +B-spp-Deer ! ! ! ! ! ! ! ! ! +B-quintana ! ! ! ! ! ! ! ! +B-grahamii ! ! ! +-10 ! +--8 ! +B-vinsonii ! ! +-11 ! ! ! +B--doshiae ! ! +-12 ! ! +B-birtlesi ! ! ! +B-arupensi ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 B-clarridg 0.00991 2 5 0.00317 5 4 0.00093 4 B-berhoffi 0.00289 4 B-elizabet 0.00811 5 8 0.00116 8 9 0.00102 9 7 0.00135 7 B-henselae 0.00477 7 6 0.00079 6 3 0.00144 3 B-bacillif 0.00715 3 1 0.00455 1 B--weissii 0.00229 1 B-spp-Deer 0.00211 6 B-quintana 0.01039 9 10 0.00126 10 B-grahamii 0.00181 10 11 0.00027 11 B-vinsonii 0.00266 11 12 0.00024 12 B--doshiae 0.00130 12 B-birtlesi 0.00020 8 B-arupensi 0.00579 2 A-tumefaci 0.06129 Data set # 64: Neighbor-joining method Negative branch lengths allowed +B-clarridg ! ! +B-spp-Deer ! +--1 ! ! +B--weissii --2--4 ! ! +B-bacillif ! ! ! ! +--5 +B-elizabet ! ! ! ! ! ! +B-quintana ! +--7 +--6 ! ! ! ! +B-arupensi ! ! ! +--3 ! +--8 +B-berhoffi ! ! ! ! +B-henselae ! ! ! ! +--9 +B-grahamii ! ! ! ! +-10 +B-birtlesi ! ! +-11 ! +-12 +B--doshiae ! ! ! +B-vinsonii ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 B-clarridg 0.00958 2 4 0.00189 4 1 0.00391 1 B-spp-Deer 0.00189 1 B--weissii 0.00251 4 5 0.00097 5 B-bacillif 0.00926 5 7 0.00097 7 B-elizabet 0.00873 7 8 0.00130 8 6 0.00158 6 B-quintana 0.00966 6 3 0.00139 3 B-arupensi 0.00317 3 B-berhoffi 0.00193 8 9 0.00034 9 B-henselae 0.00352 9 10 0.00209 10 B-grahamii 0.00103 10 12 0.00037 12 11 0.00020 11 B-birtlesi 0.00153 11 B--doshiae 0.00067 12 B-vinsonii 0.00270 2 A-tumefaci 0.05832 Data set # 65: Neighbor-joining method Negative branch lengths allowed +B--weissii +--1 ! +B-spp-Deer ! ! +B-elizabet +--3 ! ! ! ! +B-arupensi ! ! ! +--8 ! ! ! ! +B-berhoffi ! +--5 +--9 ! ! ! ! +B-birtlesi ! ! ! ! ! ! ! ! +-10 +B-vinsonii ! ! ! ! +-11 ! ! ! ! ! ! +B-henselae ! +--7 +-12 +--6 ! ! ! +B-grahamii ! ! ! ! ! +B--doshiae ! ! ! ! +B-quintana ! +--4 ! +B-clarridg ! --2B-bacillif ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 3 0.00179 3 1 0.00859 1 B--weissii 0.00101 1 B-spp-Deer 0.00039 3 5 0.00270 5 B-elizabet 0.00404 5 7 0.00165 7 9 0.00077 9 8 0.00069 8 B-arupensi 0.00375 8 B-berhoffi 0.00285 9 10 0.00108 10 B-birtlesi 0.00194 10 12 0.00024 12 11 0.00007 11 B-vinsonii 0.00184 11 6 0.00101 6 B-henselae 0.00231 6 B-grahamii 0.00059 12 B--doshiae 0.00033 7 4 0.00258 4 B-quintana 0.00720 4 B-clarridg 0.00810 2 B-bacillif 0.00694 2 A-tumefaci 0.05556 Data set # 66: Neighbor-joining method Negative branch lengths allowed +B-bacillif +--3 ! ! +B--weissii ! +--1 ! +B-spp-Deer +--4 ! ! +B-elizabet ! ! ! ! ! ! +B-berhoffi ! +--5 ! ! ! ! +B-henselae ! ! ! ! ! +-10 +-12 +B-vinsonii ! ! ! ! ! ! ! ! +--9 +B-grahamii ! ! ! ! +--6 ! +-11 +--7 +B-birtlesi ! ! ! ! ! +B--doshiae ! ! ! ! +B-quintana ! +--8 ! +B-arupensi ! --2B-clarridg ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 4 0.00148 4 3 0.00047 3 B-bacillif 0.00526 3 1 0.00284 1 B--weissii 0.00059 1 B-spp-Deer 0.00161 4 5 0.00151 5 B-elizabet 0.00454 5 10 0.00163 10 B-berhoffi 0.00191 10 11 0.00051 11 12 0.00038 12 B-henselae 0.00230 12 9 0.00065 9 B-vinsonii 0.00134 9 7 0.00086 7 6 0.00041 6 B-grahamii 0.00011 6 B-birtlesi 0.00059 7 B--doshiae -0.00041 11 8 0.00086 8 B-quintana 0.01002 8 B-arupensi 0.00188 2 B-clarridg 0.00656 2 A-tumefaci 0.05534 Data set # 67: Neighbor-joining method Negative branch lengths allowed +B-birtlesi ! ! +B-berhoffi ! +--9 ! ! +B-elizabet ! ! ! ! +B-bacillif ! ! +--3 ! ! ! ! +B-spp-Deer ! ! ! +--1 ! ! +--4 +B--weissii ! ! ! ! --8-12 ! ! +B-clarridg ! ! +--5 +--2 ! ! ! ! +B-quintana ! ! +--6 ! ! ! ! ! +B-henselae ! ! ! ! ! ! +-10 +B--doshiae ! ! ! ! ! ! ! ! +B-vinsonii ! +-11 +--7 ! ! +B-arupensi ! ! ! +B-grahamii ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 8 B-birtlesi 0.00118 8 12 0.00107 12 9 0.00090 9 B-berhoffi 0.00092 9 B-elizabet 0.00498 12 11 0.00023 11 10 0.00026 10 6 0.00158 6 5 0.00102 5 4 0.00020 4 3 0.00187 3 B-bacillif 0.00789 3 1 0.00461 1 B-spp-Deer 0.00324 1 B--weissii 0.00046 4 2 0.00318 2 B-clarridg 0.00814 2 B-quintana 0.00726 5 B-henselae 0.00298 6 B--doshiae 0.00111 10 7 0.00103 7 B-vinsonii 0.00136 7 B-arupensi 0.00154 11 B-grahamii 0.00078 8 A-tumefaci 0.06162 Data set # 68: Neighbor-joining method Negative branch lengths allowed +B-quintana ! +--5 +B-berhoffi ! ! +--6 ! ! ! +B-arupensi ! +--7 ! ! +B-birtlesi ! +--9 ! ! +B-elizabet ! +-11 ! ! +B--doshiae +--4 +-12 ! ! ! +B-vinsonii ! ! +-10 ! ! ! +B-henselae ! ! +--8 ! ! +B-grahamii ! ! ! ! +B-spp-Deer ! ! +--1 ! +--3 +B--weissii ! ! ! +B-bacillif ! --2B-clarridg ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 4 0.00154 4 5 0.00126 5 B-quintana 0.00363 5 7 0.00049 7 6 0.00025 6 B-berhoffi 0.00030 6 B-arupensi 0.00410 7 9 0.00171 9 B-birtlesi 0.00189 9 11 0.00033 11 B-elizabet 0.00408 11 12 0.00011 12 B--doshiae 0.00019 12 10 0.00018 10 B-vinsonii 0.00117 10 8 0.00033 8 B-henselae 0.00342 8 B-grahamii 0.00018 4 3 0.00117 3 1 0.00670 1 B-spp-Deer 0.00169 1 B--weissii 0.00051 3 B-bacillif 0.00210 2 B-clarridg 0.00583 2 A-tumefaci 0.04657 Data set # 69: Neighbor-joining method Negative branch lengths allowed +B-berhoffi +--6 ! +B-arupensi ! +--8 +B-elizabet ! ! +--7 ! ! ! +B-grahamii ! +-10 ! ! +B-birtlesi ! +-12 ! ! +B-vinsonii +--5 +-11 ! ! ! +B--doshiae ! ! +--9 ! ! +B-henselae ! ! ! ! +B--weissii ! ! +--1 ! ! ! +B-spp-Deer ! +--3 ! ! +B-clarridg ! +--2 ! +B-quintana ! --4B-bacillif ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 4 5 0.00145 5 8 0.00131 8 6 0.00125 6 B-berhoffi 0.00263 6 B-arupensi 0.00177 8 10 0.00060 10 7 0.00147 7 B-elizabet 0.00685 7 B-grahamii 0.00115 10 12 0.00045 12 B-birtlesi 0.00293 12 11 0.00039 11 B-vinsonii 0.00143 11 9 0.00072 9 B--doshiae 0.00089 9 B-henselae 0.00351 5 3 0.00160 3 1 0.00556 1 B--weissii 0.00136 1 B-spp-Deer 0.00154 3 2 0.00219 2 B-clarridg 0.01018 2 B-quintana 0.00602 4 B-bacillif 0.00622 4 A-tumefaci 0.04608 Data set # 70: Neighbor-joining method Negative branch lengths allowed +B-clarridg ! ! +B-elizabet ! +--8 ! ! +B-berhoffi ! +--9 ! ! ! +B-arupensi ! ! +-10 ! ! ! +B-vinsonii ! ! +-12 ! ! ! +B--doshiae ! ! +-11 --3--7 +B-grahamii ! ! ! ! +B--weissii ! ! +--1 ! ! +--5 +B-spp-Deer ! ! ! ! ! ! ! +B-henselae ! +--6 ! ! +B-birtlesi ! ! +--2 ! +--4 +B-quintana ! ! ! +B-bacillif ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 B-clarridg 0.00600 3 7 0.00311 7 9 0.00083 9 8 0.00067 8 B-elizabet 0.00680 8 B-berhoffi 0.00130 9 10 0.00037 10 B-arupensi 0.00393 10 12 0.00059 12 B-vinsonii 0.00175 12 11 0.00045 11 B--doshiae 0.00012 11 B-grahamii 0.00058 7 6 0.00092 6 5 0.00182 5 1 0.00620 1 B--weissii 0.00059 1 B-spp-Deer 0.00311 5 B-henselae 0.00260 6 4 0.00234 4 2 0.00172 2 B-birtlesi 0.00168 2 B-quintana 0.00562 4 B-bacillif 0.01123 3 A-tumefaci 0.05880 Data set # 71: Neighbor-joining method Negative branch lengths allowed +B-spp-Deer +--1 ! +B--weissii ! ! +B-elizabet ! ! +--4 +--8 +B-henselae ! ! ! ! +--9 ! ! ! ! ! +B-grahamii ! ! ! +-10 ! ! ! ! +B-vinsonii ! ! ! +-11 ! +--7 ! +B-birtlesi ! ! +-12 +--3 ! +B--doshiae ! ! ! ! ! ! +B-quintana ! ! ! +--5 ! ! +--6 +B-arupensi ! ! ! ! ! +B-berhoffi ! ! ! +B-bacillif ! --2B-clarridg ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 3 0.00368 3 4 0.00075 4 1 0.00545 1 B-spp-Deer 0.00197 1 B--weissii 0.00243 4 7 0.00407 7 8 0.00051 8 B-elizabet 0.00850 8 10 0.00202 10 9 0.00053 9 B-henselae 0.00257 9 B-grahamii 0.00113 10 11 0.00122 11 B-vinsonii 0.00268 11 12 0.00022 12 B-birtlesi 0.00207 12 B--doshiae 0.00013 7 6 0.00079 6 5 0.00099 5 B-quintana 0.01107 5 B-arupensi 0.00453 6 B-berhoffi 0.00266 3 B-bacillif 0.01032 2 B-clarridg 0.00595 2 A-tumefaci 0.04785 Data set # 72: Neighbor-joining method Negative branch lengths allowed +B-arupensi ! ! +B-berhoffi ! ! ! ! +B-quintana ! ! ! --3--6 +--5 +B-bacillif ! ! ! ! +--2 ! ! ! ! ! ! +B-spp-Deer ! ! ! +--4 +--1 ! ! ! ! +B--weissii ! +--7 ! ! ! +B-clarridg ! ! ! ! +B-henselae ! ! ! ! +--9 +B-elizabet ! ! +--8 ! ! ! +B-grahamii ! +-10 ! ! +B-birtlesi ! +-12 ! ! +B--doshiae ! +-11 ! +B-vinsonii ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 3 B-arupensi 0.00360 3 6 0.00226 6 B-berhoffi 0.00189 6 7 0.00062 7 5 0.00216 5 B-quintana 0.00729 5 4 0.00101 4 2 0.00394 2 B-bacillif 0.00867 2 1 0.00608 1 B-spp-Deer 0.00158 1 B--weissii 0.00062 4 B-clarridg 0.01086 7 9 0.00226 9 B-henselae 0.00483 9 10 0.00063 10 8 0.00202 8 B-elizabet 0.01117 8 B-grahamii 0.00053 10 12 0.00032 12 B-birtlesi 0.00211 12 11 0.00004 11 B--doshiae 0.00072 11 B-vinsonii 0.00078 3 A-tumefaci 0.07000 Data set # 73: Neighbor-joining method Negative branch lengths allowed +B-clarridg ! ! +B-quintana ! ! ! ! +B-spp-Deer ! ! +--1 ! +--5 ! +B--weissii ! ! ! ! ! ! ! ! +B-grahamii ! ! ! ! +--4 ! ! ! ! +--8 +B-elizabet ! ! +--6 ! ! ! ! ! +-10 +B-berhoffi ! ! ! ! ! ! ! ! +-11 +B-birtlesi --2--3 ! ! ! ! ! ! ! ! +B-arupensi ! ! ! ! +-12 ! ! +--7 ! +B--doshiae ! ! ! +--9 ! ! ! +B-vinsonii ! ! ! ! ! +B-henselae ! ! ! +B-bacillif ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Between And Length ------- --- ------ 2 B-clarridg 0.00727 2 3 0.00104 3 5 0.00171 5 B-quintana 0.00961 5 6 0.00042 6 1 0.00624 1 B-spp-Deer 0.00102 1 B--weissii 0.00118 6 7 0.00157 7 11