Nucleic acid sequence Maximum Likelihood method, version 3.573c



Empirical Base Frequencies:

   A       0.24776
   C       0.23268
   G       0.31176
  T(U)     0.20780

Transition/transversion ratio =   2.000000

(Transition/transversion parameter =   1.482218)


  +B-clarridg
  !  
  !     +B-bacillif
  !  +--5  
  !  !  !  +B--weissii
  !  !  +--9  
  !  !     +B-spp-Deer
  !  !  
  !  !     +B-berhoffi
  !  !     !  
-12--6  +--4  +B-arupensi
  !  !  !  !  !  
  !  !  !  !  !     +B-birtlesi
  !  !  !  +--2     !  
  !  !  !     !  +--3     +B-henselae
  !  !  !     !  !  !  +-11  
  !  !  !     !  !  +--7  +B--doshiae
  !  +-10     +--1     !  
  !     !        !     +B-vinsonii
  !     !        !  
  !     !        !  +B-grahamii
  !     !        +--8  
  !     !           +B-elizabet
  !     !  
  !     +B-quintana
  !  
  +---A-tumefaci


remember: (although rooted by outgroup) this is an unrooted tree!

Ln Likelihood = -3071.17095

Examined 1332 trees

 Between        And            Length      Approx. Confidence Limits
 -------        ---            ------      ------- ---------- ------

  12          B-clarridg        0.00620     (  0.00178,     0.01068) **
  12             6              0.00496     (  0.00081,     0.00907) **
   6             5              0.00421     (  0.00041,     0.00792) **
   5          B-bacillif        0.00973     (  0.00416,     0.01525) **
   5             9              0.00663     (  0.00208,     0.01121) **
   9          B--weissii        0.00109     (     zero,     0.00301) **
   9          B-spp-Deer        0.00182     (     zero,     0.00420) **
   6            10              0.00259     (     zero,     0.00558) **
  10             4              0.00290     (     zero,     0.00605) **
   4          B-berhoffi        0.00147     (     zero,     0.00350) **
   4             2              0.00003     (     zero,     0.00217)
   2          B-arupensi        0.00364     (  0.00047,     0.00685) **
   2             1              0.00369     (  0.00041,     0.00689) **
   1             3              0.00071     (     zero,     0.00215) *
   3          B-birtlesi        0.00219     (     zero,     0.00466) **
   3             7              0.00006     (     zero,     0.00178)
   7            11              0.00076     (     zero,     0.00221) **
  11          B-henselae        0.00591     (  0.00177,     0.00995) **
  11          B--doshiae        0.00003     (     zero,    infinity)
   7          B-vinsonii        0.00219     (     zero,     0.00467) **
   1             8              0.00146     (     zero,     0.00350) **
   8          B-grahamii        0.00003     (     zero,     0.00187)
   8          B-elizabet        0.00955     (  0.00436,     0.01474) **
  10          B-quintana        0.00964     (  0.00431,     0.01501) **
  12          A-tumefaci        0.06324     (  0.04954,     0.07734) **

     *  = significantly positive, P < 0.05
     ** = significantly positive, P < 0.01