14 Populations Fitch-Margoliash method version 3.573c Data set # 1: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B-bacillif ! +--8 ! ! ! +B-spp-Deer ! ! +-10 ! ! +B--weissii ! ! ! ! +B-arupensi ! ! +-11 --5--9 ! +B-berhoffi ! ! ! ! ! +--2 +B--doshiae ! ! ! ! +--7 ! ! ! ! ! ! +B-vinsonii ! ! ! ! ! +--4 ! ! ! +--1 +B-henselae ! ! ! ! ! +--3 ! +B-elizabet ! ! ! +--6 ! ! +-12 +B-grahamii ! ! ! ! ! +B-birtlesi ! ! ! +B-quintana ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.97986 Average percent standard deviation = 7.37812 examined 870 trees Between And Length ------- --- ------ 5 B-clarridg 0.01241 5 9 0.00375 9 8 0.00071 8 B-bacillif 0.00683 8 10 0.00647 10 B-spp-Deer 0.00000 10 B--weissii 0.00000 9 3 0.00057 3 2 0.00123 2 11 0.00079 11 B-arupensi 0.00117 11 B-berhoffi 0.00253 2 1 0.00217 1 7 0.00060 7 B--doshiae 0.00008 7 4 0.00052 4 B-vinsonii 0.00010 4 B-henselae 0.00280 1 12 0.00017 12 6 0.00286 6 B-elizabet 0.00650 6 B-grahamii 0.00010 12 B-birtlesi 0.00298 3 B-quintana 0.01106 5 A-tumefaci 0.05319 Data set # 2: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-elizabet ! ! +B--doshiae +--7 ! ! ! +-11 +B-grahamii ! ! ! ! +-12 ! ! ! +--8 +B-birtlesi ! +--4 ! ! ! +B-vinsonii +--6 ! ! ! ! +B-arupensi ! ! +--9 ! ! +B-berhoffi +--3 ! ! ! ! +B-clarridg ! ! +--1 ! ! +B-quintana ! ! ! +B-henselae ! ! +B-bacillif --5--2 ! ! +B--weissii ! +-10 ! +B-spp-Deer ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.94158 Average percent standard deviation = 7.23258 examined 568 trees Between And Length ------- --- ------ 5 3 0.00172 3 6 0.00088 6 7 0.00122 7 B-elizabet 0.00618 7 4 0.00041 4 11 0.00135 11 B--doshiae 0.00131 11 8 0.00012 8 12 0.00005 12 B-grahamii 0.00141 12 B-birtlesi 0.00149 8 B-vinsonii 0.00140 4 9 0.00131 9 B-arupensi 0.00353 9 B-berhoffi 0.00087 6 1 0.00120 1 B-clarridg 0.01336 1 B-quintana 0.00734 3 B-henselae 0.00552 5 2 0.00412 2 B-bacillif 0.01205 2 10 0.00872 10 B--weissii 0.00131 10 B-spp-Deer 0.00089 5 A-tumefaci 0.05958 Data set # 3: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B-elizabet ! ! ! ! +B-henselae ! ! ! ! +--2 ! +B-grahamii ! ! ! +--1 +-11 ! ! ! ! ! +-10 +B--doshiae ! ! ! ! ! ! ! ! ! ! ! +--8 +B-birtlesi ! ! +--9 ! ! +--4 ! +B-vinsonii ! ! ! ! ! ! ! ! +B-berhoffi ! ! ! +-12 ! ! ! +B-arupensi --7--3 ! ! ! +B-quintana ! ! ! ! +B--weissii ! ! +--6 ! +--5 +B-spp-Deer ! ! ! +B-bacillif ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.25967 Average percent standard deviation = 8.36551 examined 954 trees Between And Length ------- --- ------ 7 B-clarridg 0.01126 7 3 0.00420 3 4 0.00235 4 2 0.00127 2 B-elizabet 0.00823 2 9 0.00106 9 1 0.00082 1 B-henselae 0.00522 1 8 0.00130 8 10 0.00047 10 11 0.00001 11 B-grahamii 0.00070 11 B--doshiae 0.00000 10 B-birtlesi 0.00289 8 B-vinsonii 0.00173 9 12 0.00171 12 B-berhoffi 0.00239 12 B-arupensi 0.00051 4 B-quintana 0.00862 3 5 0.00227 5 6 0.00668 6 B--weissii 0.00141 6 B-spp-Deer 0.00299 5 B-bacillif 0.01021 7 A-tumefaci 0.06964 Data set # 4: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-quintana +--8 ! ! +B-henselae ! +--5 ! ! +B-clarridg ! +--6 ! ! +B-bacillif ! +-10 ! ! +B-spp-Deer ! +-11 ! +B--weissii ! ! +B-arupensi ! +--9 ! ! +B-berhoffi ! ! --1--2 +B--doshiae ! ! +--4 ! ! ! ! +B-birtlesi ! ! ! +-12 ! +--3 ! +B-grahamii ! ! +--7 ! ! +B-elizabet ! ! ! +B-vinsonii ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.95876 Average percent standard deviation = 10.43167 examined 934 trees Between And Length ------- --- ------ 1 8 0.00056 8 B-quintana 0.01277 8 5 0.00107 5 B-henselae 0.00362 5 6 0.00209 6 B-clarridg 0.01197 6 10 0.00211 10 B-bacillif 0.01091 10 11 0.00464 11 B-spp-Deer 0.00088 11 B--weissii 0.00062 1 2 0.00287 2 9 0.00110 9 B-arupensi 0.00222 9 B-berhoffi 0.00218 2 3 0.00061 3 4 0.00054 4 B--doshiae 0.00036 4 12 0.00042 12 B-birtlesi 0.00377 12 7 0.00070 7 B-grahamii 0.00070 7 B-elizabet 0.00890 3 B-vinsonii 0.00151 1 A-tumefaci 0.06044 Data set # 5: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B-henselae ! ! ! ! +B-berhoffi ! ! +--4 ! ! ! +B-arupensi ! +--7 ! ! ! ! +--8 +B--doshiae ! ! ! ! ! +--3 ! ! ! ! ! +-10 +B-grahamii ! ! ! ! ! ! ! ! ! +--2 +--6 +B-birtlesi ! ! ! ! --9--5 ! +B-vinsonii ! ! ! ! ! +B-elizabet ! ! ! ! +B-bacillif ! ! +-12 ! ! ! +B-quintana ! +--1 ! ! +B--weissii ! +-11 ! +B-spp-Deer ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.86725 Average percent standard deviation = 6.94122 examined 948 trees Between And Length ------- --- ------ 9 B-clarridg 0.00910 9 5 0.00386 5 7 0.00079 7 B-henselae 0.00456 7 2 0.00174 2 8 0.00056 8 4 0.00109 4 B-berhoffi 0.00226 4 B-arupensi 0.00214 8 6 0.00037 6 10 0.00018 10 3 0.00005 3 B--doshiae 0.00004 3 B-grahamii 0.00146 10 B-birtlesi 0.00284 6 B-vinsonii 0.00124 2 B-elizabet 0.01052 5 1 0.00028 1 12 0.00288 12 B-bacillif 0.01213 12 B-quintana 0.00557 1 11 0.00652 11 B--weissii 0.00092 11 B-spp-Deer 0.00128 9 A-tumefaci 0.07000 Data set # 6: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B--weissii +-10 +--1 +B-spp-Deer ! ! ! +B-clarridg ! ! +B-quintana ! ! ! ! +B-elizabet ! +-11 ! ! ! ! ! +B-vinsonii ! ! ! ! ! ! ! +--6 +--5 +B-arupensi ! ! ! ! ! +--8 ! ! ! ! ! ! +B-berhoffi ! ! ! ! +--4 --2--7 ! ! ! +B-birtlesi ! ! +--3 ! +-12 ! ! ! +--9 +B-grahamii ! ! ! ! ! ! ! +B--doshiae ! ! ! ! ! +B-henselae ! ! ! +B-bacillif ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.22126 Average percent standard deviation = 8.23696 examined 600 trees Between And Length ------- --- ------ 2 1 0.00163 1 10 0.00587 10 B--weissii 0.00096 10 B-spp-Deer 0.00194 1 B-clarridg 0.01029 2 7 0.00050 7 11 0.00161 11 B-quintana 0.00974 11 6 0.00110 6 B-elizabet 0.00906 6 3 0.00091 3 5 0.00059 5 B-vinsonii 0.00226 5 4 0.00046 4 8 0.00143 8 B-arupensi 0.00489 8 B-berhoffi 0.00251 4 9 0.00041 9 12 0.00023 12 B-birtlesi 0.00186 12 B-grahamii 0.00104 9 B--doshiae 0.00089 3 B-henselae 0.00555 7 B-bacillif 0.00759 2 A-tumefaci 0.04745 Data set # 7: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-quintana ! ! +B-elizabet ! ! ! +-12 +B-vinsonii +--3 ! ! ! ! ! ! +-11 +B-birtlesi ! ! ! ! +--2 ! ! +--8 +--5 +B-grahamii ! ! ! ! ! ! ! ! ! +B--doshiae ! +--6 ! +--4 ! +B-henselae ! ! ! ! ! ! +B-berhoffi ! ! +--1 ! ! +B-arupensi ! ! ! ! +B-bacillif ! +-10 ! ! +B-spp-Deer ! +--9 ! +B--weissii ! --7B-clarridg ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.48402 Average percent standard deviation = 9.07995 examined 696 trees Between And Length ------- --- ------ 7 4 0.00343 4 3 0.00212 3 B-quintana 0.00924 3 6 0.00101 6 8 0.00108 8 12 0.00020 12 B-elizabet 0.00793 12 11 0.00045 11 B-vinsonii 0.00237 11 5 0.00048 5 2 0.00015 2 B-birtlesi 0.00186 2 B-grahamii 0.00104 5 B--doshiae 0.00027 8 B-henselae 0.00463 6 1 0.00134 1 B-berhoffi 0.00127 1 B-arupensi 0.00093 4 10 0.00047 10 B-bacillif 0.00861 10 9 0.00840 9 B-spp-Deer 0.00261 9 B--weissii 0.00109 7 B-clarridg 0.00741 7 A-tumefaci 0.06459 Data set # 8: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B-henselae ! ! ! +--5 +B-quintana ! ! ! ! ! ! +--9 +B--weissii ! ! ! +-11 ! ! +--3 +B-spp-Deer ! ! ! --7--6 +B-bacillif ! ! ! ! +B-elizabet ! ! ! ! ! ! +B-birtlesi ! ! ! +-12 ! +--2 +--1 +B--doshiae ! ! ! ! ! ! +--8 +B-grahamii ! ! ! ! ! +--4 +B-vinsonii ! ! ! ! +B-arupensi ! +-10 ! +B-berhoffi ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.85514 Average percent standard deviation = 10.15201 examined 1162 trees Between And Length ------- --- ------ 7 B-clarridg 0.01022 7 6 0.00349 6 5 0.00147 5 B-henselae 0.00185 5 9 0.00144 9 B-quintana 0.01386 9 3 0.00354 3 11 0.00398 11 B--weissii 0.00055 11 B-spp-Deer 0.00235 3 B-bacillif 0.00640 6 2 0.00108 2 B-elizabet 0.00831 2 4 0.00020 4 8 0.00023 8 1 0.00101 1 12 0.00019 12 B-birtlesi 0.00071 12 B--doshiae 0.00000 1 B-grahamii 0.00131 8 B-vinsonii 0.00256 4 10 0.00116 10 B-arupensi 0.00188 10 B-berhoffi 0.00252 7 A-tumefaci 0.06318 Data set # 9: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B-grahamii ! +--4 ! ! +B-birtlesi ! +--2 ! ! ! +B-henselae ! ! ! +--9 ! ! +--8 +B--doshiae ! +--5 ! ! ! ! +B-vinsonii ! ! ! ! +--7 ! +B-arupensi ! ! ! +--1 ! ! ! +B-berhoffi ! +-12 ! ! ! ! +B-elizabet ! +--6 ! ! ! ! +B-quintana ! ! ! -11--3 +B-bacillif ! ! ! ! +B--weissii ! +-10 ! +B-spp-Deer ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 2.44477 Average percent standard deviation = 11.65420 examined 556 trees Between And Length ------- --- ------ 11 B-clarridg 0.01282 11 3 0.00456 3 6 0.00027 6 12 0.00162 12 7 0.00135 7 5 0.00104 5 2 0.00081 2 4 0.00072 4 B-grahamii 0.00084 4 B-birtlesi 0.00276 2 8 0.00095 8 9 0.00117 9 B-henselae 0.00280 9 B--doshiae 0.00080 8 B-vinsonii 0.00188 5 1 0.00117 1 B-arupensi 0.00176 1 B-berhoffi 0.00194 7 B-elizabet 0.01061 12 B-quintana 0.00734 6 B-bacillif 0.01122 3 10 0.00921 10 B--weissii 0.00000 10 B-spp-Deer 0.00361 11 A-tumefaci 0.05608 Data set # 10: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-henselae ! ! +B-berhoffi ! +-11 ! ! +B-arupensi +--4 +--1 ! ! ! ! +B-vinsonii ! ! ! ! ! ! ! ! +--6 +B--doshiae ! ! ! ! +-10 ! ! ! ! ! +B-birtlesi ! +--5 +--9 ! ! ! +B-elizabet ! ! +--2 ! ! +B-grahamii ! ! ! ! +B-quintana ! +--7 ! +B-clarridg ! ! +B-bacillif --3-12 ! ! +B--weissii ! +--8 ! +B-spp-Deer ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.23998 Average percent standard deviation = 8.29985 examined 1142 trees Between And Length ------- --- ------ 3 4 0.00156 4 B-henselae 0.00396 4 5 0.00186 5 1 0.00092 1 11 0.00191 11 B-berhoffi 0.00155 11 B-arupensi 0.00285 1 6 0.00173 6 B-vinsonii 0.00197 6 9 0.00016 9 10 0.00016 10 B--doshiae 0.00065 10 B-birtlesi 0.00155 9 2 0.00111 2 B-elizabet 0.00488 2 B-grahamii 0.00102 5 7 0.00162 7 B-quintana 0.00599 7 B-clarridg 0.00651 3 12 0.00156 12 B-bacillif 0.00803 12 8 0.01127 8 B--weissii 0.00152 8 B-spp-Deer 0.00068 3 A-tumefaci 0.05978 Data set # 11: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B-quintana +--8 ! ! ! ! +B-henselae ! ! ! +--5 ! ! ! ! ! +B-vinsonii ! +--7 ! +--6 ! ! ! ! +B-grahamii ! ! +--2 +-12 ! ! ! ! ! +B-birtlesi ! ! ! ! +--4 ! ! ! ! +B--doshiae ! +--1 ! ! ! +B-elizabet ! ! ! ! +B-arupensi ! +-10 ! +B-berhoffi ! ! +B--weissii ! +--3 -11--9 +B-spp-Deer ! ! ! +B-bacillif ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.79802 Average percent standard deviation = 6.65841 examined 500 trees Between And Length ------- --- ------ 11 8 0.00157 8 B-clarridg 0.01574 8 7 0.00231 7 B-quintana 0.00869 7 1 0.00299 1 2 0.00097 2 5 0.00082 5 B-henselae 0.00490 5 6 0.00130 6 B-vinsonii 0.00223 6 12 0.00061 12 B-grahamii 0.00135 12 4 0.00015 4 B-birtlesi 0.00071 4 B--doshiae 0.00000 2 B-elizabet 0.00868 1 10 0.00107 10 B-arupensi 0.00621 10 B-berhoffi 0.00189 11 9 0.00247 9 3 0.00756 3 B--weissii 0.00129 3 B-spp-Deer 0.00311 9 B-bacillif 0.01166 11 A-tumefaci 0.06076 Data set # 12: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B--doshiae +--4 ! +B-birtlesi +-10 ! ! +B-berhoffi +--6 +-11 ! ! +B-arupensi ! ! +--1 +B-grahamii ! ! ! ! +B-henselae +--7 +--2 ! ! +B-vinsonii +--8 ! ! ! +B-elizabet +--9 ! ! ! +B-quintana +-12 ! ! ! +B-clarridg ! ! ! +B-bacillif ! ! +B--weissii --3--5 ! +B-spp-Deer ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.08043 Average percent standard deviation = 7.74752 examined 1516 trees Between And Length ------- --- ------ 3 12 0.00227 12 9 0.00041 9 8 0.00155 8 7 0.00078 7 1 0.00131 1 6 0.00041 6 10 0.00005 10 4 0.00004 4 B--doshiae 0.00069 4 B-birtlesi 0.00081 10 11 0.00146 11 B-berhoffi 0.00140 11 B-arupensi 0.00150 6 B-grahamii 0.00208 1 2 0.00055 2 B-henselae 0.00321 2 B-vinsonii 0.00119 7 B-elizabet 0.01044 8 B-quintana 0.00733 9 B-clarridg 0.00828 12 B-bacillif 0.00692 3 5 0.00563 5 B--weissii 0.00058 5 B-spp-Deer 0.00092 3 A-tumefaci 0.05456 Data set # 13: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B-quintana ! ! ! +--4 +B-vinsonii ! ! ! ! ! ! +--9 +B-henselae ! ! ! ! ! ! ! ! +B-birtlesi ! ! +-11 +-12 ! ! ! +--7 +B-grahamii ! ! ! ! ! --5--1 ! ! +B--doshiae ! ! +--3 ! ! ! +B-berhoffi ! ! ! +--8 ! ! +-10 +B-elizabet ! ! ! ! ! +B-arupensi ! ! ! ! +B-bacillif ! +--2 ! ! +B-spp-Deer ! +--6 ! +B--weissii ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.72111 Average percent standard deviation = 9.77841 examined 582 trees Between And Length ------- --- ------ 5 B-clarridg 0.01054 5 1 0.00230 1 4 0.00192 4 B-quintana 0.01007 4 9 0.00177 9 B-vinsonii 0.00236 9 11 0.00058 11 B-henselae 0.00309 11 3 0.00049 3 7 0.00057 7 12 0.00029 12 B-birtlesi 0.00306 12 B-grahamii 0.00134 7 B--doshiae 0.00051 3 10 0.00101 10 8 0.00051 8 B-berhoffi 0.00226 8 B-elizabet 0.00584 10 B-arupensi 0.00444 1 2 0.00016 2 B-bacillif 0.00890 2 6 0.00583 6 B-spp-Deer 0.00075 6 B--weissii 0.00075 5 A-tumefaci 0.06416 Data set # 14: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-quintana ! ! +B-elizabet ! +--2 ! +--1 +B-grahamii +--7 ! ! ! ! +--8 +B-birtlesi ! ! ! ! ! ! ! ! +B-vinsonii ! ! ! +-10 ! +--9 ! +B--doshiae ! ! +--5 +--6 ! +B-henselae ! ! ! ! ! ! +B-berhoffi ! ! +--4 ! ! +B-arupensi +-11 ! ! ! ! +B--weissii ! ! +-12 ! ! +B-spp-Deer ! ! ! +B-bacillif ! --3B-clarridg ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 2.10654 Average percent standard deviation = 10.81804 examined 980 trees Between And Length ------- --- ------ 3 11 0.00349 11 6 0.00153 6 7 0.00109 7 B-quintana 0.00807 7 9 0.00107 9 8 0.00137 8 1 0.00015 1 2 0.00207 2 B-elizabet 0.00517 2 B-grahamii 0.00063 1 B-birtlesi 0.00529 8 10 0.00127 10 B-vinsonii 0.00153 10 5 0.00063 5 B--doshiae 0.00078 5 B-henselae 0.00282 9 4 0.00086 4 B-berhoffi 0.00321 4 B-arupensi 0.00339 6 12 0.00789 12 B--weissii 0.00119 12 B-spp-Deer 0.00031 11 B-bacillif 0.01068 3 B-clarridg 0.00548 3 A-tumefaci 0.05732 Data set # 15: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-spp-Deer +-12 ! +B--weissii ! ! +B-elizabet ! ! ! ! +B-vinsonii ! +-10 +--9 ! ! ! ! ! +B--doshiae ! ! ! ! +-11 +--5 ! +--7 +B-birtlesi ! ! ! ! ! ! +--1 ! +B-henselae ! ! ! ! +--3 ! ! ! ! +B-grahamii ! ! ! ! ! ! +--6 ! +B-berhoffi ! ! ! ! +--2 ! ! ! ! +B-arupensi ! +--8 ! ! ! +B-quintana ! ! ! +B-bacillif ! --4B-clarridg ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.87251 Average percent standard deviation = 6.96222 examined 968 trees Between And Length ------- --- ------ 4 5 0.00269 5 12 0.00620 12 B-spp-Deer 0.00136 12 B--weissii 0.00154 5 8 0.00096 8 6 0.00038 6 1 0.00134 1 10 0.00130 10 B-elizabet 0.00753 10 7 0.00088 7 9 0.00021 9 B-vinsonii 0.00131 9 11 0.00017 11 B--doshiae 0.00064 11 B-birtlesi 0.00156 7 3 0.00052 3 B-henselae 0.00295 3 B-grahamii 0.00145 1 2 0.00145 2 B-berhoffi 0.00248 2 B-arupensi 0.00262 6 B-quintana 0.00919 8 B-bacillif 0.00654 4 B-clarridg 0.00907 4 A-tumefaci 0.05503 Data set # 16: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-bacillif +--4 ! ! +B-spp-Deer ! +-11 ! +B--weissii ! ! +B-henselae ! ! +--3 ! +B-grahamii ! ! ! +--9 ! ! ! +--5 +B-birtlesi ! ! +--6 ! ! ! ! ! ! +--7 +B-vinsonii ! ! ! ! ! ! ! ! ! ! +--8 +B--doshiae ! ! ! ! ! ! ! +-12 ! ! ! +B-arupensi ! ! +--1 +--2 ! ! ! +B-berhoffi ! ! ! ! ! +B-elizabet ! ! ! +B-quintana ! -10B-clarridg ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.30912 Average percent standard deviation = 8.52813 examined 1026 trees Between And Length ------- --- ------ 10 3 0.00500 3 4 0.00331 4 B-bacillif 0.00513 4 11 0.00521 11 B-spp-Deer 0.00129 11 B--weissii 0.00091 3 12 0.00026 12 6 0.00093 6 B-henselae 0.00278 6 1 0.00054 1 8 0.00026 8 7 0.00105 7 5 0.00016 5 9 0.00035 9 B-grahamii 0.00171 9 B-birtlesi 0.00049 5 B-vinsonii 0.00070 7 B--doshiae 0.00059 8 2 0.00089 2 B-arupensi 0.00276 2 B-berhoffi 0.00234 1 B-elizabet 0.00881 12 B-quintana 0.00580 10 B-clarridg 0.00794 10 A-tumefaci 0.05076 Data set # 17: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-berhoffi ! +--1 +B-arupensi ! ! ! ! ! ! +B-quintana ! +--5 ! ! ! ! +B-henselae ! ! ! ! ! ! ! ! +B-elizabet ! +-10 +--4 +-12 ! ! ! ! ! ! +B-grahamii ! ! ! ! ! +-11 ! ! ! +--8 ! +B-birtlesi ! ! ! ! +--9 ! +--3 ! +B--doshiae ! ! ! ! ! +B-vinsonii ! ! ! ! +B-bacillif ! +--2 ! ! +B-spp-Deer ! +--7 ! +B--weissii ! --6B-clarridg ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.75724 Average percent standard deviation = 9.88052 examined 508 trees Between And Length ------- --- ------ 6 1 0.00141 1 B-berhoffi 0.00282 1 5 0.00060 5 B-arupensi 0.00181 5 10 0.00119 10 B-quintana 0.00507 10 3 0.00064 3 4 0.00291 4 B-henselae 0.00411 4 8 0.00164 8 12 0.00034 12 B-elizabet 0.00734 12 11 0.00059 11 B-grahamii 0.00130 11 9 0.00020 9 B-birtlesi 0.00000 9 B--doshiae 0.00000 8 B-vinsonii 0.00190 3 2 0.00219 2 B-bacillif 0.00380 2 7 0.00425 7 B-spp-Deer 0.00051 7 B--weissii 0.00099 6 B-clarridg 0.01120 6 A-tumefaci 0.05710 Data set # 18: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-elizabet ! +--1 +B-arupensi ! ! +--2 ! ! ! +B-berhoffi ! +--3 ! ! +B-henselae ! +--8 +--5 ! +B-grahamii ! ! +--9 ! ! ! +B-birtlesi ! ! +-11 +-12 ! +B--doshiae ! ! ! ! ! +B-vinsonii ! ! ! +B-quintana ! ! +B-bacillif --4-10 ! ! +B-clarridg ! +--7 ! ! +B--weissii ! +--6 ! +B-spp-Deer ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.79624 Average percent standard deviation = 9.98954 examined 606 trees Between And Length ------- --- ------ 4 12 0.00100 12 5 0.00139 5 1 0.00150 1 B-elizabet 0.00561 1 3 0.00024 3 2 0.00168 2 B-arupensi 0.00292 2 B-berhoffi 0.00218 3 8 0.00086 8 B-henselae 0.00280 8 9 0.00044 9 B-grahamii 0.00057 9 11 0.00013 11 B-birtlesi 0.00002 11 B--doshiae 0.00068 5 B-vinsonii 0.00249 12 B-quintana 0.00605 4 10 0.00077 10 B-bacillif 0.00716 10 7 0.00178 7 B-clarridg 0.00774 7 6 0.00615 6 B--weissii 0.00097 6 B-spp-Deer 0.00263 4 A-tumefaci 0.05900 Data set # 19: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B--weissii +--6 +--5 +B-spp-Deer ! ! +--4 +B-bacillif ! ! ! ! +B-quintana ! +--8 ! +B-clarridg ! ! +B-henselae ! ! ! +-12 +B-elizabet ! ! ! ! ! ! ! ! +B-birtlesi ! ! +--3 +--7 ! ! ! +--9 +B-grahamii -10--2 ! ! ! ! ! +--1 +B-vinsonii ! ! ! ! ! +B--doshiae ! ! ! ! +B-berhoffi ! +-11 ! +B-arupensi ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.18224 Average percent standard deviation = 8.10433 examined 958 trees Between And Length ------- --- ------ 10 4 0.00047 4 5 0.00269 5 6 0.01082 6 B--weissii 0.00087 6 B-spp-Deer 0.00353 5 B-bacillif 0.01442 4 8 0.00122 8 B-quintana 0.00650 8 B-clarridg 0.01120 10 2 0.00256 2 12 0.00167 12 B-henselae 0.00328 12 3 0.00114 3 B-elizabet 0.00987 3 1 0.00130 1 9 0.00023 9 7 0.00008 7 B-birtlesi 0.00076 7 B-grahamii 0.00074 9 B-vinsonii 0.00137 1 B--doshiae 0.00047 2 11 0.00226 11 B-berhoffi 0.00238 11 B-arupensi 0.00132 10 A-tumefaci 0.05761 Data set # 20: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-bacillif ! ! +B-berhoffi ! +-11 ! ! +B-arupensi ! ! ! +--4 +B-elizabet ! ! ! ! ! ! ! ! +B-vinsonii ! ! +--8 +--6 ! ! ! ! ! +B-grahamii ! ! ! ! +-12 ! ! +--5 +B-birtlesi --3--2 ! ! ! ! +B-henselae ! ! +--9 ! ! +B--doshiae ! ! ! ! +B-spp-Deer ! ! +--1 ! ! ! +B--weissii ! +--7 ! ! +B-clarridg ! +-10 ! +B-quintana ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.32276 Average percent standard deviation = 8.57244 examined 690 trees Between And Length ------- --- ------ 3 B-bacillif 0.00716 3 2 0.00254 2 4 0.00202 4 11 0.00125 11 B-berhoffi 0.00224 11 B-arupensi 0.00516 4 8 0.00062 8 B-elizabet 0.00754 8 5 0.00091 5 6 0.00022 6 B-vinsonii 0.00225 6 12 0.00034 12 B-grahamii 0.00103 12 B-birtlesi 0.00267 5 9 0.00143 9 B-henselae 0.00439 9 B--doshiae 0.00071 2 7 0.00073 7 1 0.00866 1 B-spp-Deer 0.00128 1 B--weissii 0.00092 7 10 0.00095 10 B-clarridg 0.01247 10 B-quintana 0.01123 3 A-tumefaci 0.06314 Data set # 21: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B--weissii +--6 +--4 +B-spp-Deer ! ! ! +B-bacillif +--1 ! ! +B-quintana ! ! ! ! ! ! +B-arupensi ! +--8 +-12 ! ! ! +B-berhoffi ! ! ! ! +--5 +B-birtlesi ! ! +--2 ! ! ! ! +B-elizabet ! ! ! +--7 ! +--3 +B-grahamii ! ! ! ! +B-vinsonii ! +-10 ! ! +B-henselae ! +--9 ! +B--doshiae ! -11B-clarridg ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.53005 Average percent standard deviation = 9.21968 examined 752 trees Between And Length ------- --- ------ 11 1 0.00483 1 4 0.00193 4 6 0.00575 6 B--weissii 0.00006 6 B-spp-Deer 0.00364 4 B-bacillif 0.00758 1 8 0.00101 8 B-quintana 0.00853 8 5 0.00190 5 12 0.00117 12 B-arupensi 0.00420 12 B-berhoffi 0.00170 5 3 0.00094 3 2 0.00028 2 B-birtlesi 0.00238 2 7 0.00192 7 B-elizabet 0.00351 7 B-grahamii 0.00019 3 10 0.00053 10 B-vinsonii 0.00267 10 9 0.00044 9 B-henselae 0.00540 9 B--doshiae 0.00050 11 B-clarridg 0.01091 11 A-tumefaci 0.05449 Data set # 22: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B-henselae ! +--8 ! ! ! +B--weissii ! ! +--3 ! ! +B-spp-Deer ! +--7 ! ! ! +B-vinsonii ! ! ! ! ! ! ! ! +B-quintana ! ! +--4 +--6 ! ! ! +--1 +B-arupensi ! ! ! ! ! ! ! ! ! +B-berhoffi -12--2 +--5 ! ! ! +B--doshiae ! ! ! ! ! ! +--9 +B-elizabet ! ! ! +-11 ! ! +-10 +B-grahamii ! ! ! ! ! +B-birtlesi ! ! ! +B-bacillif ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 2.25333 Average percent standard deviation = 11.18861 examined 614 trees Between And Length ------- --- ------ 12 B-clarridg 0.00959 12 2 0.00354 2 7 0.00152 7 8 0.00220 8 B-henselae 0.00394 8 3 0.00624 3 B--weissii 0.00036 3 B-spp-Deer 0.00034 7 4 0.00114 4 B-vinsonii 0.00224 4 5 0.00117 5 1 0.00069 1 6 0.00052 6 B-quintana 0.00864 6 B-arupensi 0.00316 1 B-berhoffi 0.00302 5 9 0.00135 9 B--doshiae 0.00040 9 10 0.00032 10 11 0.00065 11 B-elizabet 0.00653 11 B-grahamii 0.00077 10 B-birtlesi 0.00086 2 B-bacillif 0.00915 12 A-tumefaci 0.07391 Data set # 23: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B--weissii +-12 +--8 +B-spp-Deer ! ! +--2 +B-quintana ! ! ! +B-bacillif ! ! +B-vinsonii ! +--5 +--4 ! ! +B--doshiae ! ! ! +--9 ! ! ! ! +B-grahamii ! ! +--3 +-10 ! ! ! ! +B-birtlesi ! ! ! ! ! ! ! ! +B-berhoffi ! +--1 ! +--7 ! ! +--6 +B-arupensi ! ! ! ! ! +B-elizabet ! ! ! +B-henselae ! -11B-clarridg ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.58823 Average percent standard deviation = 9.39335 examined 680 trees Between And Length ------- --- ------ 11 4 0.00258 4 2 0.00040 2 8 0.00052 8 12 0.00554 12 B--weissii 0.00096 12 B-spp-Deer 0.00124 8 B-quintana 0.00694 2 B-bacillif 0.00720 4 1 0.00122 1 3 0.00181 3 5 0.00086 5 B-vinsonii 0.00203 5 9 0.00012 9 B--doshiae 0.00137 9 10 0.00045 10 B-grahamii 0.00101 10 B-birtlesi 0.00189 3 6 0.00082 6 7 0.00089 7 B-berhoffi 0.00255 7 B-arupensi 0.00255 6 B-elizabet 0.00584 1 B-henselae 0.00454 11 B-clarridg 0.01112 11 A-tumefaci 0.06488 Data set # 24: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B--weissii +--1 ! +B-spp-Deer ! ! +B-quintana ! ! ! +-12 +B-elizabet +-10 ! ! ! ! ! ! +--3 +B-henselae ! ! ! ! ! ! ! ! +--4 +B-grahamii ! ! ! ! ! ! ! ! +--9 +B-berhoffi ! ! ! ! +--2 ! +--7 ! ! +B-arupensi ! ! +--6 ! ! ! +B-birtlesi ! ! +-11 ! ! ! +B-vinsonii ! ! +--5 ! ! +B--doshiae ! ! ! +B-bacillif ! --8B-clarridg ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.80104 Average percent standard deviation = 6.67099 examined 558 trees Between And Length ------- --- ------ 8 10 0.00033 10 1 0.00410 1 B--weissii 0.00098 1 B-spp-Deer 0.00192 10 7 0.00057 7 12 0.00113 12 B-quintana 0.01086 12 3 0.00040 3 B-elizabet 0.00709 3 4 0.00085 4 B-henselae 0.00341 4 9 0.00090 9 B-grahamii 0.00150 9 6 0.00024 6 2 0.00028 2 B-berhoffi 0.00274 2 B-arupensi 0.00166 6 11 0.00018 11 B-birtlesi 0.00126 11 5 0.00023 5 B-vinsonii 0.00067 5 B--doshiae 0.00003 7 B-bacillif 0.00821 8 B-clarridg 0.00921 8 A-tumefaci 0.06229 Data set # 25: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B--weissii +-11 ! +B-spp-Deer ! ! +B-quintana ! +--6 ! ! +B-clarridg ! ! +--7 ! +B--doshiae ! ! ! ! ! ! +--2 ! +B-grahamii ! ! ! ! +--1 +-10 ! ! ! ! ! ! +--3 +B-elizabet ! ! ! ! ! ! ! ! ! ! ! ! ! +--9 +B-berhoffi ! ! ! +--8 ! ! +--4 ! +B-birtlesi ! ! ! ! ! ! +B-vinsonii ! ! +-12 ! ! +B-arupensi ! ! ! +B-henselae ! --5B-bacillif ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.54872 Average percent standard deviation = 9.27578 examined 1154 trees Between And Length ------- --- ------ 5 7 0.00405 7 11 0.00812 11 B--weissii 0.00075 11 B-spp-Deer 0.00145 7 4 0.00162 4 2 0.00171 2 6 0.00182 6 B-quintana 0.00789 6 B-clarridg 0.01421 2 8 0.00113 8 1 0.00042 1 B--doshiae 0.00096 1 9 0.00083 9 3 0.00060 3 10 0.00111 10 B-grahamii 0.00102 10 B-elizabet 0.01138 3 B-berhoffi 0.00357 9 B-birtlesi 0.00214 8 12 0.00067 12 B-vinsonii 0.00185 12 B-arupensi 0.00325 4 B-henselae 0.00280 5 B-bacillif 0.00932 5 A-tumefaci 0.07248 Data set # 26: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B-berhoffi ! ! ! ! +B-arupensi ! ! ! --4--3 ! +B-henselae ! ! ! +-11 ! ! ! ! ! +B--doshiae ! ! ! ! +--2 ! +--5 ! ! +B-birtlesi ! ! +--1 +-10 ! ! ! ! ! +B-grahamii ! ! ! ! +--6 ! ! ! ! +B-elizabet ! ! ! ! ! +--8 +B-vinsonii ! ! ! ! +B-spp-Deer ! ! +--9 ! ! +--7 +B--weissii ! ! ! ! ! +-12 +B-bacillif ! ! ! +B-quintana ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.15004 Average percent standard deviation = 7.99318 examined 612 trees Between And Length ------- --- ------ 4 B-clarridg 0.00464 4 3 0.00445 3 B-berhoffi 0.00191 3 5 0.00057 5 B-arupensi 0.00274 5 8 0.00047 8 1 0.00245 1 11 0.00028 11 B-henselae 0.00548 11 2 0.00058 2 B--doshiae 0.00014 2 10 0.00022 10 B-birtlesi 0.00261 10 6 0.00038 6 B-grahamii 0.00076 6 B-elizabet 0.00954 1 B-vinsonii 0.00206 8 12 0.00173 12 7 0.00193 7 9 0.00583 9 B-spp-Deer 0.00093 9 B--weissii 0.00057 7 B-bacillif 0.01042 12 B-quintana 0.00759 4 A-tumefaci 0.06306 Data set # 27: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B-henselae ! ! ! +--2 +B--weissii ! ! ! +--6 ! ! +--3 +B-spp-Deer ! ! ! ! ! +B-bacillif ! ! ! ! +B-birtlesi ! ! +--4 -11-10 +--8 +B-grahamii ! ! ! ! ! ! +--5 +B-vinsonii ! ! ! ! ! ! ! ! +B-berhoffi ! ! +--1 +--7 ! ! ! ! +B-arupensi ! ! +--9 ! ! ! ! ! +B-elizabet ! +-12 ! ! ! +B--doshiae ! ! ! +B-quintana ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.87994 Average percent standard deviation = 10.21965 examined 572 trees Between And Length ------- --- ------ 11 B-clarridg 0.00625 11 10 0.00278 10 2 0.00178 2 B-henselae 0.00322 2 3 0.00205 3 6 0.00494 6 B--weissii 0.00041 6 B-spp-Deer 0.00109 3 B-bacillif 0.00972 10 12 0.00067 12 9 0.00074 9 1 0.00096 1 5 0.00038 5 8 0.00022 8 4 0.00044 4 B-birtlesi 0.00262 4 B-grahamii 0.00108 8 B-vinsonii 0.00067 5 7 0.00070 7 B-berhoffi 0.00151 7 B-arupensi 0.00219 1 B-elizabet 0.00484 9 B--doshiae 0.00079 12 B-quintana 0.00734 11 A-tumefaci 0.06205 Data set # 28: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg +--4 ! ! +B-bacillif ! +-11 +--2 ! +B-spp-Deer ! ! +--9 ! ! +B--weissii ! ! ! +B-quintana ! ! +B-arupensi ! +--5 ! +-10 +B-berhoffi ! ! ! ! +--6 +B-elizabet ! ! ! ! ! ! +B--doshiae ! ! +--7 ! ! ! +B-vinsonii --3--1 +-12 ! ! ! +B-grahamii ! ! +--8 ! ! +B-birtlesi ! ! ! +B-henselae ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 2.04382 Average percent standard deviation = 10.65577 examined 1046 trees Between And Length ------- --- ------ 3 2 0.00100 2 4 0.00171 4 B-clarridg 0.00932 4 11 0.00267 11 B-bacillif 0.00705 11 9 0.00589 9 B-spp-Deer 0.00248 9 B--weissii 0.00122 2 B-quintana 0.01244 3 1 0.00088 1 6 0.00150 6 10 0.00055 10 5 0.00146 5 B-arupensi 0.00312 5 B-berhoffi 0.00278 10 B-elizabet 0.00901 6 7 0.00144 7 B--doshiae 0.00113 7 12 0.00104 12 B-vinsonii 0.00121 12 8 0.00024 8 B-grahamii 0.00142 8 B-birtlesi 0.00148 1 B-henselae 0.00256 3 A-tumefaci 0.06755 Data set # 29: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-arupensi ! ! +B-clarridg ! +--8 ! ! ! +B-bacillif ! ! +-11 +--6 +--3 +B-quintana ! ! ! ! ! ! ! ! +B-spp-Deer ! ! ! +-10 ! ! ! +B--weissii ! ! ! ! +--2 +B-vinsonii ! ! ! ! ! ! +B-grahamii ! ! +-12 +--5 ! ! ! ! +--7 +B-elizabet ! ! ! ! ! ! ! +--4 +--1 +B-birtlesi ! ! ! ! ! +B--doshiae ! ! ! +B-henselae ! --9B-berhoffi ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.07822 Average percent standard deviation = 7.73959 examined 584 trees Between And Length ------- --- ------ 9 6 0.00046 6 B-arupensi 0.00071 6 2 0.00139 2 3 0.00177 3 8 0.00076 8 B-clarridg 0.01228 8 11 0.00194 11 B-bacillif 0.00834 11 B-quintana 0.00716 3 10 0.00478 10 B-spp-Deer 0.00107 10 B--weissii 0.00043 2 4 0.00311 4 12 0.00075 12 B-vinsonii 0.00121 12 1 0.00022 1 7 0.00019 7 5 0.00104 5 B-grahamii 0.00045 5 B-elizabet 0.00765 7 B-birtlesi 0.00147 1 B--doshiae 0.00055 4 B-henselae 0.00179 9 B-berhoffi 0.00103 9 A-tumefaci 0.05057 Data set # 30: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-bacillif ! ! +B-elizabet ! ! ! ! +B--doshiae ! ! +-12 ! ! ! +B-henselae ! ! +--1 ! +--8 ! ! +B-birtlesi ! ! ! ! ! +-10 ! ! ! ! +--7 +B-grahamii ! ! ! +--2 ! ! ! ! ! ! +B-vinsonii ! ! ! ! ! ! ! +--3 ! +B-arupensi -11--6 ! +--5 ! ! ! +B-berhoffi ! ! ! ! ! +B-quintana ! ! ! ! +B-spp-Deer ! ! +--4 ! +--9 +B--weissii ! ! ! +B-clarridg ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.30635 Average percent standard deviation = 8.51910 examined 726 trees Between And Length ------- --- ------ 11 B-bacillif 0.00972 11 6 0.00053 6 8 0.00276 8 B-elizabet 0.01102 8 3 0.00155 3 2 0.00062 2 1 0.00124 1 12 0.00064 12 B--doshiae 0.00079 12 B-henselae 0.00431 1 7 0.00009 7 10 0.00050 10 B-birtlesi 0.00185 10 B-grahamii 0.00105 7 B-vinsonii 0.00211 2 5 0.00094 5 B-arupensi 0.00238 5 B-berhoffi 0.00202 3 B-quintana 0.00643 6 9 0.00080 9 4 0.00686 4 B-spp-Deer 0.00206 4 B--weissii 0.00084 9 B-clarridg 0.01127 11 A-tumefaci 0.06378 Data set # 31: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B-bacillif ! +--8 ! ! ! +B-spp-Deer ! ! +--4 ! ! +B--weissii ! ! ! ! +B-arupensi ! ! +--1 ! ! ! +B-berhoffi -11--3 ! ! ! ! +B-birtlesi ! ! ! +--7 ! ! +--2 ! ! +B--doshiae ! ! ! ! ! +-12 ! ! ! ! +--5 +B-vinsonii ! ! ! ! ! ! ! ! ! ! ! ! +B-elizabet ! +-10 +--9 +--6 ! ! ! +B-grahamii ! ! ! ! ! +B-henselae ! ! ! +B-quintana ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.31938 Average percent standard deviation = 8.56147 examined 546 trees Between And Length ------- --- ------ 11 B-clarridg 0.00678 11 3 0.00304 3 8 0.00200 8 B-bacillif 0.00810 8 4 0.00738 4 B-spp-Deer 0.00112 4 B--weissii 0.00108 3 10 0.00123 10 2 0.00058 2 1 0.00153 1 B-arupensi 0.00230 1 B-berhoffi 0.00060 2 9 0.00224 9 5 0.00064 5 7 0.00009 7 B-birtlesi 0.00338 7 12 0.00030 12 B--doshiae 0.00061 12 B-vinsonii 0.00009 5 6 0.00152 6 B-elizabet 0.00840 6 B-grahamii 0.00110 9 B-henselae 0.00422 10 B-quintana 0.00741 11 A-tumefaci 0.06572 Data set # 32: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B-quintana ! ! ! ! +B-bacillif --2-11 ! ! ! ! +B-spp-Deer ! ! ! +--4 ! +--8 ! +B--weissii ! ! ! ! ! ! +B-vinsonii ! ! ! +--1 ! +--5 ! +B-henselae ! ! +--3 ! ! ! ! +B--doshiae ! ! ! ! ! ! ! ! +-12 +B-elizabet ! ! ! ! +--9 ! +--6 +--7 +B-grahamii ! ! ! ! ! +B-birtlesi ! ! ! ! +B-berhoffi ! +-10 ! +B-arupensi ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.94571 Average percent standard deviation = 7.24842 examined 686 trees Between And Length ------- --- ------ 2 B-clarridg 0.01162 2 11 0.00302 11 B-quintana 0.00799 11 8 0.00105 8 B-bacillif 0.01104 8 5 0.00153 5 4 0.00619 4 B-spp-Deer 0.00236 4 B--weissii 0.00054 5 6 0.00256 6 3 0.00118 3 1 0.00047 1 B-vinsonii 0.00194 1 B-henselae 0.00166 3 12 0.00037 12 B--doshiae 0.00057 12 7 0.00018 7 9 0.00091 9 B-elizabet 0.00533 9 B-grahamii 0.00047 7 B-birtlesi 0.00155 6 10 0.00092 10 B-berhoffi 0.00164 10 B-arupensi 0.00276 2 A-tumefaci 0.06368 Data set # 33: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B-henselae ! ! ! ! +B-elizabet ! ! +--4 ! ! ! ! +B-berhoffi ! +-10 ! +--3 ! ! ! +--6 +B-arupensi ! ! ! ! ! ! ! ! ! ! +B--doshiae ! ! ! ! ! ! ! ! ! ! +--8 +B-birtlesi ! ! +--2 ! +-12 -11--9 ! +--5 +B-grahamii ! ! ! ! ! ! ! +B-vinsonii ! ! ! ! ! +B-quintana ! ! ! ! +B--weissii ! ! +--7 ! +--1 +B-spp-Deer ! ! ! +B-bacillif ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.83782 Average percent standard deviation = 10.10451 examined 686 trees Between And Length ------- --- ------ 11 B-clarridg 0.00951 11 9 0.00690 9 10 0.00128 10 B-henselae 0.00402 10 2 0.00010 2 6 0.00115 6 4 0.00088 4 B-elizabet 0.00601 4 3 0.00219 3 B-berhoffi 0.00146 3 B-arupensi 0.00364 6 8 0.00184 8 B--doshiae 0.00122 8 5 0.00084 5 12 0.00018 12 B-birtlesi 0.00000 12 B-grahamii 0.00000 5 B-vinsonii 0.00131 2 B-quintana 0.00963 9 1 0.00155 1 7 0.00690 7 B--weissii 0.00127 7 B-spp-Deer 0.00313 1 B-bacillif 0.00975 11 A-tumefaci 0.06309 Data set # 34: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-arupensi ! ! +B-berhoffi ! ! ! ! +B-henselae ! ! +--3 ! ! ! ! +B-spp-Deer ! ! ! +--5 ! ! +--1 +B--weissii --8--2 ! ! ! ! ! ! +B-quintana ! ! +-11 +--7 ! ! ! ! +B-bacillif ! ! +--9 ! ! ! ! ! +B-clarridg ! ! ! ! ! +--4 +B-vinsonii ! ! ! ! +B--doshiae ! +-12 ! ! +B-birtlesi ! +-10 ! ! +B-elizabet ! +--6 ! +B-grahamii ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.34506 Average percent standard deviation = 8.64441 examined 542 trees Between And Length ------- --- ------ 8 B-arupensi 0.00435 8 2 0.00100 2 B-berhoffi 0.00128 2 4 0.00134 4 9 0.00087 9 11 0.00261 11 1 0.00052 1 3 0.00066 3 B-henselae 0.00497 3 5 0.00422 5 B-spp-Deer 0.00255 5 B--weissii 0.00115 1 7 0.00172 7 B-quintana 0.00943 7 B-bacillif 0.00607 11 B-clarridg 0.00788 9 B-vinsonii 0.00258 4 12 0.00044 12 B--doshiae 0.00093 12 10 0.00014 10 B-birtlesi 0.00122 10 6 0.00085 6 B-elizabet 0.00860 6 B-grahamii 0.00090 8 A-tumefaci 0.04655 Data set # 35: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B--weissii ! +--6 ! ! +B-spp-Deer ! ! ! ! +B-vinsonii ! ! ! ! ! +--1 +B--doshiae ! ! ! ! ! ! ! ! +--9 +B-elizabet ! ! ! ! +--7 --8--4 +-11 +--3 +B-grahamii ! ! ! ! ! ! ! ! ! +B-birtlesi ! ! +--2 ! ! ! ! ! +B-henselae ! ! ! ! ! ! +--5 ! +B-arupensi ! ! ! ! +-12 ! ! ! ! +B-berhoffi ! +-10 ! ! ! +B-bacillif ! ! ! +B-quintana ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.27366 Average percent standard deviation = 8.41183 examined 732 trees Between And Length ------- --- ------ 8 B-clarridg 0.00967 8 4 0.00395 4 6 0.00597 6 B--weissii 0.00063 6 B-spp-Deer 0.00307 4 10 0.00069 10 5 0.00008 5 2 0.00123 2 11 0.00308 11 1 0.00059 1 B-vinsonii 0.00175 1 9 0.00040 9 B--doshiae 0.00065 9 3 0.00008 3 7 0.00156 7 B-elizabet 0.00752 7 B-grahamii 0.00058 3 B-birtlesi 0.00080 11 B-henselae 0.00319 2 12 0.00107 12 B-arupensi 0.00267 12 B-berhoffi 0.00173 5 B-bacillif 0.00984 10 B-quintana 0.00630 8 A-tumefaci 0.05763 Data set # 36: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B--weissii +-12 +--3 +B-spp-Deer ! ! ! +B-bacillif ! ! +B-arupensi +--2 +--7 ! ! ! +B-berhoffi ! ! ! ! ! ! +B--doshiae ! ! ! +-10 ! +--8 +--4 +B-vinsonii ! ! ! ! +-11 ! +--1 +B-birtlesi ! ! ! ! ! ! ! ! ! ! +B-grahamii ! ! +--9 +--6 ! ! ! +B-elizabet ! ! ! ! ! +B-henselae ! ! ! +B-quintana ! --5B-clarridg ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.54567 Average percent standard deviation = 9.26665 examined 706 trees Between And Length ------- --- ------ 5 11 0.00559 11 2 0.00058 2 3 0.00107 3 12 0.00551 12 B--weissii 0.00039 12 B-spp-Deer 0.00181 3 B-bacillif 0.00472 2 8 0.00140 8 7 0.00077 7 B-arupensi 0.00556 7 B-berhoffi 0.00104 8 9 0.00128 9 1 0.00086 1 4 0.00025 4 10 0.00039 10 B--doshiae 0.00024 10 B-vinsonii 0.00126 4 B-birtlesi 0.00241 1 6 0.00184 6 B-grahamii 0.00033 6 B-elizabet 0.00477 9 B-henselae 0.00270 11 B-quintana 0.00675 5 B-clarridg 0.00723 5 A-tumefaci 0.05557 Data set # 37: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B-bacillif ! +--8 ! ! ! +B--weissii ! ! +--5 ! ! +B-spp-Deer ! ! --6--4 +B-quintana ! ! +-12 ! ! ! +B-birtlesi ! ! ! ! ! ! +B--doshiae ! ! ! +--2 ! +--9 ! ! +B-berhoffi ! ! ! +--7 ! ! ! ! +B-vinsonii ! ! +-10 +--3 ! ! ! ! +B-arupensi ! ! ! ! ! +--1 ! +B-henselae ! ! +-11 ! ! +B-grahamii ! ! ! +B-elizabet ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.83182 Average percent standard deviation = 10.08799 examined 1074 trees Between And Length ------- --- ------ 6 B-clarridg 0.00924 6 4 0.00227 4 8 0.00250 8 B-bacillif 0.00702 8 5 0.00562 5 B--weissii 0.00287 5 B-spp-Deer 0.00223 4 9 0.00101 9 12 0.00064 12 B-quintana 0.01188 12 B-birtlesi 0.00212 9 1 0.00060 1 10 0.00051 10 2 0.00012 2 B--doshiae 0.00094 2 7 0.00051 7 B-berhoffi 0.00133 7 3 0.00073 3 B-vinsonii 0.00195 3 B-arupensi 0.00315 10 11 0.00174 11 B-henselae 0.00472 11 B-grahamii 0.00118 1 B-elizabet 0.00641 6 A-tumefaci 0.06276 Data set # 38: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-bacillif +--5 ! ! +B--weissii ! +--1 ! +B-spp-Deer +--2 ! ! +B-henselae ! ! ! ! ! ! +B-arupensi ! +--6 +-12 ! ! +-11 +B-vinsonii ! ! ! ! ! ! ! +B--doshiae ! +--4 ! ! +B-birtlesi ! ! ! ! +--3 +B-grahamii ! ! ! ! +-10 +B-elizabet ! ! +--9 ! +--8 +B-berhoffi ! ! ! +B-quintana ! --7B-clarridg ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.10408 Average percent standard deviation = 7.83185 examined 618 trees Between And Length ------- --- ------ 7 2 0.00263 2 5 0.00069 5 B-bacillif 0.00898 5 1 0.00349 1 B--weissii 0.00097 1 B-spp-Deer 0.00193 2 6 0.00141 6 B-henselae 0.00300 6 4 0.00156 4 11 0.00014 11 12 0.00040 12 B-arupensi 0.00550 12 B-vinsonii 0.00110 11 B--doshiae 0.00077 4 3 0.00049 3 B-birtlesi 0.00244 3 10 0.00045 10 B-grahamii 0.00187 10 8 0.00044 8 9 0.00067 9 B-elizabet 0.00760 9 B-berhoffi 0.00190 8 B-quintana 0.00648 7 B-clarridg 0.00894 7 A-tumefaci 0.04646 Data set # 39: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-grahamii +--7 +--3 +B-birtlesi ! ! +--6 +B-vinsonii ! ! ! +B--doshiae +--9 ! ! +B-berhoffi ! ! +--8 ! +--5 +B-arupensi ! ! ! +B-elizabet ! ! +B--weissii ! +-11 ! ! +B-spp-Deer ! +--1 ! ! ! +B-quintana ! +--2 +-10 ! ! ! +B-clarridg -12--4 ! ! ! +B-bacillif ! ! ! +B-henselae ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.64220 Average percent standard deviation = 9.55161 examined 818 trees Between And Length ------- --- ------ 12 9 0.00109 9 6 0.00113 6 3 0.00088 3 7 0.00036 7 B-grahamii 0.00000 7 B-birtlesi 0.00070 3 B-vinsonii 0.00184 6 B--doshiae 0.00178 9 5 0.00071 5 8 0.00155 8 B-berhoffi 0.00093 8 B-arupensi 0.00497 5 B-elizabet 0.00600 12 4 0.00117 4 2 0.00106 2 1 0.00133 1 11 0.00737 11 B--weissii 0.00073 11 B-spp-Deer 0.00077 1 10 0.00056 10 B-quintana 0.01038 10 B-clarridg 0.00802 2 B-bacillif 0.00947 4 B-henselae 0.00682 12 A-tumefaci 0.05341 Data set # 40: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-quintana +-12 ! ! +B-clarridg ! +--8 ! ! +B-spp-Deer ! +-10 ! +B--weissii ! ! +B-grahamii +--7 +--5 ! ! ! +B-elizabet ! ! +--6 ! ! ! ! +B--doshiae ! ! ! +--1 ! ! +--9 +B-henselae ! ! ! ! ! ! ! ! +B-vinsonii ! +--4 +--2 ! ! +B-birtlesi ! ! ! ! +B-arupensi ! +--3 ! +B-berhoffi ! -11B-bacillif ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.49329 Average percent standard deviation = 9.10828 examined 594 trees Between And Length ------- --- ------ 11 7 0.00212 7 12 0.00102 12 B-quintana 0.01106 12 8 0.00113 8 B-clarridg 0.01436 8 10 0.00830 10 B-spp-Deer 0.00267 10 B--weissii 0.00173 7 4 0.00190 4 9 0.00089 9 6 0.00025 6 5 0.00155 5 B-grahamii 0.00137 5 B-elizabet 0.00663 6 1 0.00120 1 B--doshiae 0.00078 1 B-henselae 0.00432 9 2 0.00022 2 B-vinsonii 0.00145 2 B-birtlesi 0.00215 4 3 0.00187 3 B-arupensi 0.00435 3 B-berhoffi 0.00155 11 B-bacillif 0.00799 11 A-tumefaci 0.05391 Data set # 41: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B-henselae ! ! ! ! +B-vinsonii ! +--8 +--7 ! ! ! ! ! +B-birtlesi ! ! ! ! +--9 ! ! +--3 +B--doshiae ! ! ! ! +--2 ! +B-elizabet ! ! ! +-10 ! ! ! +B-grahamii ! ! ! ! +-12 ! +B-arupensi ! ! ! +--1 ! ! ! +B-berhoffi --5--4 ! ! ! +B-quintana ! ! ! ! +B-bacillif ! +-11 ! ! +B-spp-Deer ! +--6 ! +B--weissii ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.91724 Average percent standard deviation = 7.13848 examined 532 trees Between And Length ------- --- ------ 5 B-clarridg 0.01133 5 4 0.00315 4 12 0.00012 12 2 0.00142 2 8 0.00255 8 B-henselae 0.00544 8 3 0.00093 3 7 0.00087 7 B-vinsonii 0.00141 7 9 0.00003 9 B-birtlesi 0.00213 9 B--doshiae 0.00077 3 10 0.00227 10 B-elizabet 0.01054 10 B-grahamii 0.00196 2 1 0.00175 1 B-arupensi 0.00364 1 B-berhoffi 0.00146 12 B-quintana 0.00902 4 11 0.00153 11 B-bacillif 0.00955 11 6 0.00523 6 B-spp-Deer 0.00261 6 B--weissii 0.00249 5 A-tumefaci 0.05187 Data set # 42: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B--weissii +-10 +--5 +B-spp-Deer ! ! ! +B-bacillif ! ! +B-berhoffi ! +--3 ! ! ! +B-arupensi +--9 ! +--1 ! ! +--7 +B-quintana ! ! ! ! ! ! ! ! +B-henselae ! ! ! +--6 ! ! ! ! +B-vinsonii ! ! ! +--2 ! +-11 ! +B--doshiae ! ! +--8 ! ! ! +B-grahamii ! ! +--4 ! ! +B-birtlesi ! ! ! +B-elizabet ! -12B-clarridg ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.49239 Average percent standard deviation = 9.10551 examined 582 trees Between And Length ------- --- ------ 12 9 0.00201 9 5 0.00295 5 10 0.00754 10 B--weissii 0.00042 10 B-spp-Deer 0.00108 5 B-bacillif 0.00347 9 11 0.00183 11 7 0.00151 7 3 0.00059 3 B-berhoffi 0.00459 3 1 0.00051 1 B-arupensi 0.00221 1 B-quintana 0.00659 7 6 0.00112 6 B-henselae 0.00383 6 2 0.00056 2 B-vinsonii 0.00143 2 8 0.00078 8 B--doshiae 0.00006 8 4 0.00027 4 B-grahamii 0.00112 4 B-birtlesi 0.00038 11 B-elizabet 0.00803 12 B-clarridg 0.00508 12 A-tumefaci 0.04852 Data set # 43: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-birtlesi +-10 ! ! +B-grahamii +--6 +--9 ! ! +B-elizabet ! ! +--4 +B--doshiae ! ! ! ! +B-berhoffi ! ! ! ! +--2 +B-arupensi +--7 ! +-12 ! ! +--8 +B-quintana ! ! ! ! ! +B-vinsonii +--1 ! ! ! +B-henselae ! ! ! ! +B-bacillif ! +-11 ! ! +B-spp-Deer ! +--5 ! +B--weissii ! --3B-clarridg ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.30502 Average percent standard deviation = 8.51477 examined 984 trees Between And Length ------- --- ------ 3 1 0.00435 1 7 0.00369 7 4 0.00066 4 6 0.00049 6 10 0.00031 10 B-birtlesi 0.00115 10 9 0.00075 9 B-grahamii 0.00033 9 B-elizabet 0.00697 6 B--doshiae 0.00009 4 2 0.00036 2 B-berhoffi 0.00193 2 8 0.00060 8 12 0.00030 12 B-arupensi 0.00249 12 B-quintana 0.00631 8 B-vinsonii 0.00156 7 B-henselae 0.00187 1 11 0.00173 11 B-bacillif 0.00662 11 5 0.00367 5 B-spp-Deer 0.00364 5 B--weissii 0.00006 3 B-clarridg 0.00930 3 A-tumefaci 0.07340 Data set # 44: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-quintana +--6 ! +B-bacillif ! ! +B-arupensi ! +--1 +--4 ! +B-vinsonii ! ! +--3 ! ! ! ! +B-berhoffi ! ! ! ! ! ! ! ! +-10 +B--doshiae ! ! ! ! +--7 ! +-12 ! ! +B-birtlesi +--2 ! +-11 ! ! ! ! +B-elizabet ! ! ! +--8 ! ! ! +B-grahamii ! ! ! ! ! +B-henselae ! ! ! ! +B-spp-Deer ! +--9 ! +B--weissii ! --5B-clarridg ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.23394 Average percent standard deviation = 8.27962 examined 788 trees Between And Length ------- --- ------ 5 2 0.00168 2 4 0.00047 4 6 0.00208 6 B-quintana 0.01204 6 B-bacillif 0.01626 4 12 0.00136 12 3 0.00277 3 1 0.00102 1 B-arupensi 0.00351 1 B-vinsonii 0.00309 3 10 0.00042 10 B-berhoffi 0.00207 10 11 0.00063 11 7 0.00022 7 B--doshiae 0.00010 7 B-birtlesi 0.00350 11 8 0.00101 8 B-elizabet 0.00872 8 B-grahamii 0.00158 12 B-henselae 0.00573 2 9 0.00823 9 B-spp-Deer 0.00354 9 B--weissii 0.00156 5 B-clarridg 0.01077 5 A-tumefaci 0.05913 Data set # 45: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-bacillif +-12 ! ! +B-spp-Deer +--9 +-10 ! ! +B--weissii +--5 ! ! ! +B-quintana ! ! ! +B-clarridg ! ! +B-henselae ! ! ! ! +B-birtlesi ! ! +-11 --6--4 ! ! +B-grahamii ! ! ! +--8 ! ! +--1 +B-elizabet ! ! ! ! ! ! ! ! +B-vinsonii ! +--3 +--2 ! ! +B--doshiae ! ! ! ! +B-arupensi ! +--7 ! +B-berhoffi ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.16671 Average percent standard deviation = 8.05093 examined 946 trees Between And Length ------- --- ------ 6 5 0.00144 5 9 0.00034 9 12 0.00264 12 B-bacillif 0.00800 12 10 0.00597 10 B-spp-Deer 0.00193 10 B--weissii 0.00097 9 B-quintana 0.00648 5 B-clarridg 0.00877 6 4 0.00120 4 B-henselae 0.00446 4 3 0.00134 3 1 0.00199 1 11 0.00026 11 B-birtlesi 0.00116 11 8 0.00042 8 B-grahamii 0.00066 8 B-elizabet 0.00664 1 2 0.00009 2 B-vinsonii 0.00074 2 B--doshiae 0.00076 3 7 0.00102 7 B-arupensi 0.00228 7 B-berhoffi 0.00282 6 A-tumefaci 0.06006 Data set # 46: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B-bacillif ! +--6 ! ! ! +B-spp-Deer ! ! +-11 ! ! +B--weissii ! ! --8--5 +B-quintana ! ! ! ! ! ! +B-arupensi ! ! ! +-12 ! ! ! +-10 +B-berhoffi ! +--4 ! ! ! ! +--2 +B-elizabet ! ! ! ! ! ! ! ! +B-vinsonii ! ! ! +--3 ! ! ! ! +B-birtlesi ! +--9 +--1 ! ! ! +B-grahamii ! ! +--7 ! ! +B--doshiae ! ! ! +B-henselae ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.32382 Average percent standard deviation = 8.57586 examined 646 trees Between And Length ------- --- ------ 8 B-clarridg 0.00688 8 5 0.00141 5 6 0.00120 6 B-bacillif 0.00734 6 11 0.00440 11 B-spp-Deer 0.00123 11 B--weissii 0.00097 5 4 0.00250 4 B-quintana 0.00428 4 9 0.00139 9 2 0.00049 2 10 0.00038 10 12 0.00063 12 B-arupensi 0.00356 12 B-berhoffi 0.00154 10 B-elizabet 0.00865 2 3 0.00037 3 B-vinsonii 0.00164 3 1 0.00050 1 B-birtlesi 0.00213 1 7 0.00007 7 B-grahamii 0.00071 7 B--doshiae 0.00000 9 B-henselae 0.00435 8 A-tumefaci 0.05142 Data set # 47: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-bacillif ! ! +B-quintana ! ! ! +--4 +B-henselae ! ! ! ! ! ! ! ! +B-elizabet ! ! +--6 ! ! ! ! ! +B-berhoffi ! ! ! ! +--7 ! ! +--3 ! ! +B-vinsonii ! ! ! ! +--8 -10--2 ! +-11 +B-arupensi ! ! ! ! ! ! ! ! ! ! +B-grahamii ! ! +--1 +-12 ! ! ! +B-birtlesi ! ! ! ! ! +B--doshiae ! ! ! ! +B-clarridg ! +--9 ! ! +B-spp-Deer ! +--5 ! +B--weissii ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.31929 Average percent standard deviation = 8.56117 examined 1030 trees Between And Length ------- --- ------ 10 B-bacillif 0.01003 10 2 0.00192 2 4 0.00044 4 B-quintana 0.01040 4 6 0.00139 6 B-henselae 0.00445 6 3 0.00097 3 B-elizabet 0.00853 3 1 0.00090 1 11 0.00036 11 7 0.00020 7 B-berhoffi 0.00452 7 8 0.00220 8 B-vinsonii 0.00138 8 B-arupensi 0.00372 11 12 0.00051 12 B-grahamii 0.00194 12 B-birtlesi 0.00316 1 B--doshiae 0.00125 2 9 0.00129 9 B-clarridg 0.01122 9 5 0.00952 5 B-spp-Deer 0.00113 5 B--weissii 0.00107 10 A-tumefaci 0.06657 Data set # 48: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-elizabet ! +--1 +B-clarridg ! ! ! ! +--9 +B-quintana ! ! ! ! +--6 +B-henselae ! ! ! ! ! ! +B-vinsonii ! +--7 ! ! ! +-10 +B--doshiae ! ! ! ! +-12 ! ! ! +--2 +B-birtlesi ! +--3 ! ! ! +B-grahamii ! ! ! ! +B-berhoffi ! +-11 ! +B-arupensi ! ! +B-spp-Deer ! +--4 --8--5 +B--weissii ! ! ! +B-bacillif ! +----A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.03143 Average percent standard deviation = 7.56979 examined 824 trees Between And Length ------- --- ------ 8 1 0.00337 1 B-elizabet 0.01224 1 9 0.00067 9 B-clarridg 0.01194 9 6 0.00258 6 B-quintana 0.01610 6 7 0.00190 7 B-henselae 0.00513 7 3 0.00050 3 10 0.00079 10 B-vinsonii 0.00236 10 2 0.00052 2 12 0.00020 12 B--doshiae 0.00044 12 B-birtlesi 0.00246 2 B-grahamii 0.00353 3 11 0.00170 11 B-berhoffi 0.00063 11 B-arupensi 0.00307 8 5 0.00117 5 4 0.00667 4 B-spp-Deer 0.00251 4 B--weissii 0.00189 5 B-bacillif 0.01255 8 A-tumefaci 0.07873 Data set # 49: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B-quintana ! ! ! ! +B-spp-Deer ! ! +-11 ! ! +-10 +B--weissii --2--9 ! ! ! ! ! +B-bacillif ! ! ! ! ! ! +B-vinsonii ! ! ! ! ! +--7 ! +B--doshiae ! ! +--3 ! ! ! ! ! ! +B-grahamii ! ! ! ! ! +-12 ! ! ! +--1 +--6 +B-elizabet ! ! ! ! ! ! ! +--4 ! +--5 +B-berhoffi ! ! ! ! ! ! ! +--8 +B-birtlesi ! ! ! ! ! +B-arupensi ! ! ! +B-henselae ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.17372 Average percent standard deviation = 8.07507 examined 1088 trees Between And Length ------- --- ------ 2 B-clarridg 0.00902 2 9 0.00419 9 B-quintana 0.00649 9 7 0.00157 7 10 0.00066 10 11 0.00439 11 B-spp-Deer 0.00319 11 B--weissii 0.00121 10 B-bacillif 0.00739 7 4 0.00136 4 3 0.00136 3 B-vinsonii 0.00138 3 1 0.00008 1 B--doshiae 0.00077 1 8 0.00023 8 5 0.00022 5 6 0.00059 6 12 0.00166 12 B-grahamii 0.00145 12 B-elizabet 0.01025 6 B-berhoffi 0.00239 5 B-birtlesi 0.00183 8 B-arupensi 0.00357 4 B-henselae 0.00506 2 A-tumefaci 0.05428 Data set # 50: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-spp-Deer +-12 +-11 +B--weissii ! ! ! +B-bacillif ! ! +B-henselae ! ! ! +--1 +B-birtlesi ! ! ! ! ! ! ! ! +B-berhoffi ! ! +--9 +--2 ! ! ! +--5 +B-elizabet ! ! ! ! ! ! ! +--4 +B-grahamii ! +--3 ! ! ! ! ! +B--doshiae ! ! ! +--6 ! ! ! ! +B-vinsonii --7--8 ! +-10 ! ! ! +B-arupensi ! ! ! ! ! +B-quintana ! ! ! +B-clarridg ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.85660 Average percent standard deviation = 6.89849 examined 1140 trees Between And Length ------- --- ------ 7 11 0.00282 11 12 0.00967 12 B-spp-Deer 0.00302 12 B--weissii 0.00068 11 B-bacillif 0.00803 7 8 0.00049 8 3 0.00066 3 1 0.00105 1 B-henselae 0.00330 1 9 0.00209 9 B-birtlesi 0.00252 9 4 0.00016 4 5 0.00022 5 2 0.00080 2 B-berhoffi 0.00105 2 B-elizabet 0.00775 5 B-grahamii 0.00097 4 6 0.00024 6 B--doshiae 0.00004 6 10 0.00068 10 B-vinsonii 0.00143 10 B-arupensi 0.00227 3 B-quintana 0.01066 8 B-clarridg 0.01006 7 A-tumefaci 0.05720 Data set # 51: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B-birtlesi ! ! ! +--2 +B-berhoffi ! ! ! +--9 ! ! ! ! +B--doshiae ! ! +--6 ! +--3 ! +B-arupensi ! ! ! +--5 ! ! ! +B-vinsonii ! ! ! ! ! ! +B-elizabet --1--4 +-12 ! ! +B-grahamii ! ! ! ! +B-henselae ! ! ! ! +-11 +B-quintana ! ! ! ! +--8 +B--weissii ! ! +-10 ! +--7 +B-spp-Deer ! ! ! +B-bacillif ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 0.56188 Average percent standard deviation = 5.58710 examined 576 trees Between And Length ------- --- ------ 1 B-clarridg 0.00778 1 4 0.00156 4 3 0.00223 3 2 0.00048 2 B-birtlesi 0.00195 2 6 0.00025 6 9 0.00000 9 B-berhoffi 0.00000 9 B--doshiae 0.00000 6 5 0.00070 5 B-arupensi 0.00150 5 B-vinsonii 0.00000 3 12 0.00084 12 B-elizabet 0.00513 12 B-grahamii 0.00067 4 11 0.00224 11 B-henselae 0.00346 11 8 0.00078 8 B-quintana 0.00754 8 7 0.00122 7 10 0.00714 10 B--weissii 0.00113 10 B-spp-Deer 0.00107 7 B-bacillif 0.00383 1 A-tumefaci 0.06782 Data set # 52: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-berhoffi ! ! +B-arupensi ! ! ! ! +B-birtlesi ! ! +-12 ! ! ! ! +B-grahamii ! ! ! +--1 --8-10 +--4 +B-elizabet ! ! ! ! ! ! ! ! +B-henselae ! ! +--5 +--2 ! ! ! ! +B--doshiae ! ! ! ! ! ! ! +B-vinsonii ! +--3 ! ! +B-clarridg ! ! +--9 ! ! ! ! +B-bacillif ! ! ! +--7 ! +--6 ! +B--weissii ! ! +-11 ! ! +B-spp-Deer ! ! ! +B-quintana ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.36322 Average percent standard deviation = 8.70255 examined 620 trees Between And Length ------- --- ------ 8 B-berhoffi 0.00156 8 10 0.00039 10 B-arupensi 0.00475 10 3 0.00129 3 5 0.00214 5 4 0.00046 4 12 0.00079 12 B-birtlesi 0.00200 12 1 0.00147 1 B-grahamii 0.00106 1 B-elizabet 0.00924 4 2 0.00116 2 B-henselae 0.00360 2 B--doshiae 0.00080 5 B-vinsonii 0.00312 3 6 0.00147 6 9 0.00133 9 B-clarridg 0.01075 9 7 0.00142 7 B-bacillif 0.00925 7 11 0.00633 11 B--weissii 0.00097 11 B-spp-Deer 0.00123 6 B-quintana 0.01001 8 A-tumefaci 0.06994 Data set # 53: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B--weissii +--2 ! +B-spp-Deer ! ! +B-henselae ! +-12 ! +--4 +B-grahamii ! ! ! ! +--7 +B-vinsonii ! ! ! ! +--9 +B--doshiae ! ! ! ! ! ! +B-arupensi ! ! +--1 ! +--5 ! +B-berhoffi ! ! ! +--3 ! ! ! +B-elizabet --6-10 ! ! ! +B-birtlesi ! ! ! ! +B-clarridg ! +--8 ! ! +B-bacillif ! +-11 ! +B-quintana ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.21031 Average percent standard deviation = 8.19998 examined 1130 trees Between And Length ------- --- ------ 6 2 0.01301 2 B--weissii 0.00051 2 B-spp-Deer 0.00169 6 10 0.00058 10 5 0.00282 5 9 0.00069 9 7 0.00006 7 4 0.00018 4 12 0.00035 12 B-henselae 0.00199 12 B-grahamii 0.00021 4 B-vinsonii 0.00191 7 B--doshiae 0.00000 9 1 0.00075 1 B-arupensi 0.00143 1 3 0.00073 3 B-berhoffi 0.00250 3 B-elizabet 0.00780 5 B-birtlesi 0.00230 10 8 0.00086 8 B-clarridg 0.01150 8 11 0.00129 11 B-bacillif 0.00715 11 B-quintana 0.00765 6 A-tumefaci 0.06098 Data set # 54: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B-birtlesi ! ! ! ! +B--doshiae ! ! ! ! ! ! +B-quintana ! +--1 +--5 +--6 ! ! ! ! ! ! ! +B-bacillif ! ! ! ! ! ! +-12 ! ! ! ! +--9 ! +B--weissii ! ! ! ! ! +-11 ! ! +--7 ! +B-spp-Deer ! +--3 ! ! ! ! ! ! +B-henselae ! ! ! ! ! ! ! ! +B-arupensi ! ! ! +-10 --8--2 ! +B-vinsonii ! ! ! ! ! +B-berhoffi ! ! ! ! +B-grahamii ! +--4 ! +B-elizabet ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.51579 Average percent standard deviation = 9.17662 examined 578 trees Between And Length ------- --- ------ 8 B-clarridg 0.01330 8 2 0.00289 2 3 0.00101 3 1 0.00053 1 B-birtlesi 0.00115 1 7 0.00035 7 5 0.00072 5 B--doshiae 0.00016 5 9 0.00053 9 6 0.00156 6 B-quintana 0.01000 6 12 0.00226 12 B-bacillif 0.00865 12 11 0.00539 11 B--weissii 0.00000 11 B-spp-Deer 0.00290 9 B-henselae 0.00171 7 10 0.00048 10 B-arupensi 0.00190 10 B-vinsonii 0.00100 3 B-berhoffi 0.00262 2 4 0.00197 4 B-grahamii 0.00046 4 B-elizabet 0.00984 8 A-tumefaci 0.04690 Data set # 55: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-elizabet +--7 ! +B-berhoffi ! ! +B-bacillif ! ! ! ! +B-vinsonii +--5 +--2 ! ! ! ! ! +--6 +B-spp-Deer ! ! ! ! ! ! +--8 ! ! ! ! ! +--4 +B--weissii ! ! ! +--3 ! ! ! ! ! +B-henselae ! ! ! ! ! +--9 ! +B--doshiae ! ! +-11 ! ! ! +B-grahamii ! ! +-10 ! ! +B-birtlesi ! ! ! ! +B-quintana ! +--1 ! +B-arupensi ! -12B-clarridg ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.81031 Average percent standard deviation = 10.02860 examined 1162 trees Between And Length ------- --- ------ 12 5 0.00580 5 7 0.00114 7 B-elizabet 0.00806 7 B-berhoffi 0.00154 5 9 0.00039 9 2 0.00056 2 B-bacillif 0.01107 2 3 0.00017 3 6 0.00077 6 B-vinsonii 0.00242 6 4 0.00155 4 8 0.00704 8 B-spp-Deer 0.00324 8 B--weissii 0.00046 4 B-henselae 0.00256 3 11 0.00051 11 B--doshiae 0.00090 11 10 0.00058 10 B-grahamii 0.00132 10 B-birtlesi 0.00238 9 1 0.00029 1 B-quintana 0.00936 1 B-arupensi 0.00314 12 B-clarridg 0.00882 12 A-tumefaci 0.05888 Data set # 56: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-grahamii +--6 ! +B-elizabet +--5 ! ! +B-vinsonii ! +-10 +--3 +B-birtlesi ! ! ! ! +B-arupensi +--8 +-11 ! ! +B-berhoffi ! ! +--4 ! +B-henselae ! ! +--2 ! ! +B--doshiae ! ! ! +B-quintana ! ! +B-bacillif --9-12 ! ! +B-clarridg ! +--7 ! ! +B--weissii ! +--1 ! +B-spp-Deer ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.56195 Average percent standard deviation = 9.31532 examined 1090 trees Between And Length ------- --- ------ 9 4 0.00066 4 8 0.00174 8 3 0.00080 3 5 0.00033 5 6 0.00152 6 B-grahamii 0.00175 6 B-elizabet 0.00925 5 10 0.00025 10 B-vinsonii 0.00084 10 B-birtlesi 0.00276 3 11 0.00242 11 B-arupensi 0.00233 11 B-berhoffi 0.00057 8 2 0.00096 2 B-henselae 0.00630 2 B--doshiae 0.00100 4 B-quintana 0.00913 9 12 0.00052 12 B-bacillif 0.00875 12 7 0.00176 7 B-clarridg 0.00860 7 1 0.00655 1 B--weissii 0.00220 1 B-spp-Deer 0.00360 9 A-tumefaci 0.05093 Data set # 57: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B--weissii ! +--9 ! +--7 +B-spp-Deer ! ! ! ! ! +B-bacillif ! ! ! ! +B-henselae ! ! ! ! ! ! +B-birtlesi -12-10 ! ! ! ! ! ! +B-berhoffi ! ! +--3 +--5 +-11 ! ! ! ! ! ! +--1 +B-arupensi ! ! ! ! ! ! ! ! ! ! ! ! +--4 +--2 +B-vinsonii ! ! ! ! ! ! ! ! +--6 ! ! ! +B--doshiae ! ! +--8 ! ! ! ! +B-grahamii ! ! ! ! ! +B-elizabet ! ! ! +B-quintana ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.01800 Average percent standard deviation = 7.52033 examined 1004 trees Between And Length ------- --- ------ 12 B-clarridg 0.00913 12 10 0.00265 10 7 0.00474 7 9 0.00207 9 B--weissii 0.00159 9 B-spp-Deer 0.00211 7 B-bacillif 0.00672 10 6 0.00111 6 3 0.00067 3 B-henselae 0.00384 3 8 0.00156 8 4 0.00121 4 5 0.00063 5 B-birtlesi 0.00073 5 2 0.00001 2 1 0.00000 1 11 0.00075 11 B-berhoffi 0.00000 11 B-arupensi 0.00070 1 B-vinsonii 0.00000 2 B--doshiae 0.00000 4 B-grahamii 0.00091 8 B-elizabet 0.00783 6 B-quintana 0.00926 12 A-tumefaci 0.04617 Data set # 58: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-bacillif ! ! +B--weissii ! +--9 ! ! +B-spp-Deer ! ! ! ! +B-elizabet ! ! ! ! ! ! +B-henselae ! ! ! ! --3--8 ! ! +B-vinsonii ! ! +-11 +-12 ! ! ! ! ! ! ! +--4 +B-grahamii ! ! ! ! ! ! ! ! +-10 ! ! ! ! ! ! ! +--1 +B-birtlesi ! ! ! ! ! +--2 ! ! ! ! +--7 ! +B--doshiae ! +--5 ! ! ! ! ! ! +B-arupensi ! ! ! +--6 ! ! ! +B-berhoffi ! ! ! ! ! +B-quintana ! ! ! +B-clarridg ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.15916 Average percent standard deviation = 8.02481 examined 750 trees Between And Length ------- --- ------ 3 B-bacillif 0.00958 3 8 0.00286 8 9 0.00395 9 B--weissii 0.00081 9 B-spp-Deer 0.00139 8 5 0.00272 5 11 0.00034 11 B-elizabet 0.00748 11 7 0.00047 7 12 0.00023 12 B-henselae 0.00247 12 2 0.00108 2 4 0.00072 4 B-vinsonii 0.00196 4 1 0.00096 1 10 0.00000 10 B-grahamii 0.00000 10 B-birtlesi 0.00070 1 B--doshiae 0.00000 2 6 0.00064 6 B-arupensi 0.00188 6 B-berhoffi 0.00182 7 B-quintana 0.01181 5 B-clarridg 0.01018 3 A-tumefaci 0.05462 Data set # 59: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-clarridg ! ! +B-birtlesi ! ! ! +--4 +B--doshiae ! ! ! +--1 ! ! ! ! +B-arupensi ! ! +-10 ! ! ! +B-vinsonii ! ! +--8 ! ! ! +B-henselae ! ! +-11 ! +--7 ! +B--weissii ! ! ! +--5 ! ! ! +B-spp-Deer ! ! ! ! ! ! +B-grahamii ! ! ! +-12 --6--9 ! +--2 +B-elizabet ! ! ! ! ! ! ! +--3 +B-quintana ! ! ! ! ! +B-berhoffi ! ! ! +B-bacillif ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.82428 Average percent standard deviation = 10.06722 examined 962 trees Between And Length ------- --- ------ 6 B-clarridg 0.01177 6 9 0.00032 9 7 0.00212 7 4 0.00047 4 B-birtlesi 0.00237 4 10 0.00055 10 1 0.00012 1 B--doshiae 0.00013 1 B-arupensi 0.00277 10 8 0.00068 8 B-vinsonii 0.00072 8 11 0.00113 11 B-henselae 0.00386 11 5 0.00421 5 B--weissii 0.00265 5 B-spp-Deer 0.00245 7 3 0.00032 3 2 0.00107 2 12 0.00153 12 B-grahamii 0.00208 12 B-elizabet 0.00452 2 B-quintana 0.01025 3 B-berhoffi 0.00204 9 B-bacillif 0.00788 6 A-tumefaci 0.05283 Data set # 60: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B--weissii +-12 ! +B-spp-Deer ! ! +B-berhoffi ! +-11 ! ! +B-arupensi ! ! +--9 +--3 +B-vinsonii ! ! ! ! +--2 ! ! ! ! ! ! +B-grahamii ! ! ! +--1 +--4 ! ! +--8 ! +B-elizabet ! ! ! ! ! +--7 ! ! ! +B-birtlesi ! ! +--5 ! ! ! ! +B--doshiae ! ! ! ! ! +B-henselae ! ! ! ! +B-quintana ! +-10 ! +B-bacillif ! --6B-clarridg ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.34832 Average percent standard deviation = 8.65485 examined 642 trees Between And Length ------- --- ------ 6 7 0.00338 7 9 0.00095 9 12 0.00494 12 B--weissii 0.00003 12 B-spp-Deer 0.00147 9 5 0.00204 5 8 0.00111 8 3 0.00111 3 11 0.00130 11 B-berhoffi 0.00080 11 B-arupensi 0.00070 3 1 0.00021 1 2 0.00003 2 B-vinsonii 0.00000 2 4 0.00049 4 B-grahamii 0.00023 4 B-elizabet 0.00487 1 B-birtlesi 0.00218 8 B--doshiae 0.00020 5 B-henselae 0.00110 7 10 0.00165 10 B-quintana 0.00602 10 B-bacillif 0.00718 6 B-clarridg 0.00801 6 A-tumefaci 0.05769 Data set # 61: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-bacillif ! +--5 +B-quintana ! ! ! ! +--4 +B-berhoffi ! ! +-11 ! ! ! +B-arupensi ! +--1 ! ! +B-vinsonii ! ! ! ! +--2 +B-henselae +--9 ! ! ! ! ! ! +B-grahamii ! ! +--8 +-10 ! ! ! +--7 +B-elizabet ! ! ! ! ! ! ! +--6 +B-birtlesi ! ! ! ! ! +B--doshiae ! ! ! +B-clarridg ! ! +B--weissii --3-12 ! +B-spp-Deer ! +--A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.17575 Average percent standard deviation = 8.08204 examined 1258 trees Between And Length ------- --- ------ 3 9 0.00050 9 5 0.00095 5 B-bacillif 0.00705 5 4 0.00291 4 B-quintana 0.00482 4 1 0.00092 1 11 0.00047 11 B-berhoffi 0.00233 11 B-arupensi 0.00277 1 2 0.00165 2 B-vinsonii 0.00206 2 8 0.00026 8 B-henselae 0.00388 8 6 0.00052 6 7 0.00016 7 10 0.00094 10 B-grahamii 0.00024 10 B-elizabet 0.00636 7 B-birtlesi 0.00247 6 B--doshiae 0.00019 9 B-clarridg 0.00624 3 12 0.00572 12 B--weissii 0.00008 12 B-spp-Deer 0.00062 3 A-tumefaci 0.05758 Data set # 62: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-elizabet ! ! +B-vinsonii ! ! ! ! +B-bacillif ! ! +--3 ! +-12 ! ! +B-spp-Deer ! ! ! +--6 +--2 ! ! ! ! ! +B--weissii ! ! ! ! ! ! ! +--5 +B-henselae ! ! ! --1--4 ! +B-clarridg ! ! +-10 ! ! +B-quintana ! ! ! ! +B-arupensi ! ! +-11 ! ! ! +B-berhoffi ! +--9 ! ! +B-grahamii ! +--7 ! ! +B-birtlesi ! +--8 ! +B--doshiae ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 2.53566 Average percent standard deviation = 11.86887 examined 674 trees Between And Length ------- --- ------ 1 B-elizabet 0.00713 1 4 0.00149 4 12 0.00093 12 B-vinsonii 0.00306 12 5 0.00194 5 6 0.00205 6 3 0.00651 3 B-bacillif 0.01081 3 2 0.00527 2 B-spp-Deer 0.00062 2 B--weissii 0.00088 6 B-henselae 0.00200 5 10 0.00267 10 B-clarridg 0.00915 10 B-quintana 0.00625 4 9 0.00046 9 11 0.00076 11 B-arupensi 0.00254 11 B-berhoffi 0.00256 9 7 0.00157 7 B-grahamii 0.00141 7 8 0.00009 8 B-birtlesi 0.00071 8 B--doshiae 0.00000 1 A-tumefaci 0.06107 Data set # 63: __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +B-grahamii +--4 ! ! +B-birtlesi +--9 +--8 ! ! +B--doshiae ! ! +--5 +B-vinsonii ! ! ! ! +B-elizabet ! ! +-12 +--6 +--1 +B-berhoffi ! ! ! ! ! +B-arupensi ! ! ! +B-henselae ! ! +B-spp-Deer ! +-11 ! +-10 +B--weissii ! ! ! --3--2 +B-bacillif ! ! ! ! +B-quintana ! +--7 ! +B-clarridg ! +---A-tumefaci remember: (although rooted by outgroup) this is an unrooted tree! Sum of squares = 1.75959 Average percent standard deviation = 9.88712 examined 702 trees Between And Length ------- --- ------ 3 6 0.00073 6 5 0.00132 5 9 0.00133 9 4 0.00031 4 B-grahamii 0.00190 4 8 0.00020 8 B-birtlesi 0.00016 8 B--doshiae 0.00134 9 B-vinsonii 0.00243 5 1 0.00163 1 12 0.00096 12 B-elizabet 0.00808 12 B-berhoffi 0.00292 1 B-arupensi 0.00500 6 B-henselae 0.00435 3 2 0.00045 2 10 0.00126 10 11 0.00450 11 B-spp-Deer 0.00204 11 B--weissii 0.00236 10 B-bacillif 0.00720 2 7 0.00179 7 B-quintana 0.00821 7 B-clarridg 0.01099 3 A-tumefaci 0.06385 Data set # 64: __ __ 2 \ \ (Obs - Exp)